Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:35446974-36626994

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157 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15769 5 35448157 to 35448337 180 CpG island CpG island 15769
D5Mit126 5 35459246 to 35459357 111 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 126
Cpz 5 35502218 to 35525626 23408 - protein coding gene carboxypeptidase Z
Irm2 5 35518973 to 35518973 0 QTL inflammatory response modulator 2
Cpgi15770 5 35525357 to 35526004 647 CpG island CpG island 15770
Tssr50693 5 35525542 to 35525566 24 - TSS region transcription start site region 50693
Tssr50694 5 35525567 to 35525617 50 - TSS region transcription start site region 50694
Tssr50695 5 35525691 to 35525705 14 - TSS region transcription start site region 50695
Cpgi15771 5 35531688 to 35531873 185 CpG island CpG island 15771
D5Jcs50 5 35539769 to 35539923 154 DNA segment DNA segment, Chr 5, John C. Schimenti 50
Gm43860 5 35551260 to 35553964 2704 - unclassified gene predicted gene 43860
Plk-ps1 5 35554184 to 35555970 1786 + pseudogene polo like kinase, pseudogene 1
Trmt44 5 35556208 to 35575070 18862 - protein coding gene tRNA methyltransferase 44
Cpgi15772 5 35574495 to 35575261 766 CpG island CpG island 15772
Tssr50696 5 35575046 to 35575083 37 - TSS region transcription start site region 50696
Tssr45949 5 35575116 to 35575150 34 + TSS region transcription start site region 45949
D5Mit4 5 35578005 to 35578202 197 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 4
4931431C16Rik 5 35581227 to 35588763 7536 - antisense lncRNA gene RIKEN cDNA 4931431C16 gene
Cpgi15773 5 35582770 to 35583531 761 CpG island CpG island 15773
Acox3 5 35582964 to 35614208 31244 + protein coding gene acyl-Coenzyme A oxidase 3, pristanoyl
Tssr45950 5 35583018 to 35583110 92 + TSS region transcription start site region 45950
Tssr45951 5 35583689 to 35583711 22 + TSS region transcription start site region 45951
Tssr45952 5 35588018 to 35588042 24 + TSS region transcription start site region 45952
Tssr45953 5 35588043 to 35588044 1 + TSS region transcription start site region 45953
Tssr45954 5 35588050 to 35588052 2 + TSS region transcription start site region 45954
Tssr45955 5 35588057 to 35588068 11 + TSS region transcription start site region 45955
Tssr45956 5 35592076 to 35592088 12 + TSS region transcription start site region 45956
D5Mit352 5 35614967 to 35615076 109 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 352
D5Jcs51 5 35636379 to 35636537 158 DNA segment DNA segment, Chr 5, John C. Schimenti 51
Htra3 5 35652023 to 35679782 27759 - protein coding gene HtrA serine peptidase 3
Tssr50697 5 35652607 to 35652627 20 - TSS region transcription start site region 50697
Tssr50698 5 35652653 to 35652679 26 - TSS region transcription start site region 50698
Tssr50699 5 35654163 to 35654180 17 - TSS region transcription start site region 50699
Tssr50700 5 35663223 to 35663240 17 - TSS region transcription start site region 50700
Tssr50701 5 35663456 to 35663551 95 - TSS region transcription start site region 50701
Tssr50702 5 35663585 to 35663603 18 - TSS region transcription start site region 50702
Tssr50703 5 35663604 to 35663658 54 - TSS region transcription start site region 50703
Tssr50704 5 35663681 to 35663690 9 - TSS region transcription start site region 50704
Tssr50705 5 35663777 to 35663789 12 - TSS region transcription start site region 50705
Tssr50706 5 35664058 to 35664072 14 - TSS region transcription start site region 50706
Tssr50707 5 35671513 to 35671574 61 - TSS region transcription start site region 50707
Cpgi15774 5 35678632 to 35680073 1441 CpG island CpG island 15774
Tssr1461 5 35679389 to 35679414 25 - TSS region transcription start site region 1461
Tssr50708 5 35679416 to 35679537 121 - TSS region transcription start site region 50708
D5Jcs52 5 35685685 to 35685838 153 DNA segment DNA segment, Chr 5, John C. Schimenti 52
Sh3tc1 5 35697180 to 35739987 42807 - protein coding gene SH3 domain and tetratricopeptide repeats 1
Gm31888 5 35719108 to 35722320 3212 + lncRNA gene predicted gene, 31888
Tssr50709 5 35722464 to 35722485 21 - TSS region transcription start site region 50709
Gm15650 5 35722555 to 35724485 1930 + antisense lncRNA gene predicted gene 15650
Tssr50710 5 35722607 to 35722615 8 - TSS region transcription start site region 50710
Tssr45957 5 35728408 to 35728412 4 + TSS region transcription start site region 45957
Tssr50711 5 35729007 to 35729016 9 - TSS region transcription start site region 50711
Tssr50712 5 35729022 to 35729039 17 - TSS region transcription start site region 50712
Tssr50713 5 35729048 to 35729078 30 - TSS region transcription start site region 50713
Tssr50714 5 35729088 to 35729095 7 - TSS region transcription start site region 50714
Tssr50715 5 35729260 to 35729286 26 - TSS region transcription start site region 50715
Tssr50716 5 35729290 to 35729312 22 - TSS region transcription start site region 50716
D5Jcs53 5 35737885 to 35738039 154 DNA segment DNA segment, Chr 5, John C. Schimenti 53
Tssr50717 5 35740025 to 35740056 31 - TSS region transcription start site region 50717
Cpgi15775 5 35756955 to 35758695 1740 CpG island CpG island 15775
D5Jcs39 5 35757329 to 35757478 149 DNA segment DNA segment, Chr 5, John C. Schimenti 39
Tssr45958 5 35757875 to 35757946 71 + TSS region transcription start site region 45958
Ablim2 5 35757880 to 35884973 127093 + protein coding gene actin-binding LIM protein 2
Tssr45959 5 35757951 to 35757966 15 + TSS region transcription start site region 45959
Tssr45960 5 35786151 to 35786178 27 + TSS region transcription start site region 45960
Tssr50718 5 35790621 to 35790641 20 - TSS region transcription start site region 50718
Tssr45961 5 35814356 to 35814371 15 + TSS region transcription start site region 45961
Tssr45962 5 35814375 to 35814400 25 + TSS region transcription start site region 45962
Tssr45963 5 35814424 to 35814453 29 + TSS region transcription start site region 45963
Tssr45964 5 35814455 to 35814482 27 + TSS region transcription start site region 45964
D5Mit76 5 35853866 to 35854015 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 76
Cpgi15776 5 35893000 to 35894663 1663 CpG island CpG island 15776
Afap1 5 35893319 to 36003923 110604 + protein coding gene actin filament associated protein 1
Tssr45965 5 35893360 to 35893426 66 + TSS region transcription start site region 45965
Tssr45966 5 35893430 to 35893473 43 + TSS region transcription start site region 45966
Tssr45967 5 35913709 to 35913712 3 + TSS region transcription start site region 45967
H2af-ps 5 35917897 to 35918191 294 + pseudogene H2A histone family, pseudogene
D5Mit149 5 35919002 to 35919151 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 149
Tssr45968 5 35950881 to 35950895 14 + TSS region transcription start site region 45968
Tssr45969 5 35958879 to 35958885 6 + TSS region transcription start site region 45969
Tssr45970 5 36000354 to 36000359 5 + TSS region transcription start site region 45970
Tssr45971 5 36002046 to 36002090 44 + TSS region transcription start site region 45971
Tssr45972 5 36003402 to 36003412 10 + TSS region transcription start site region 45972
Sorcs2 5 36017180 to 36398139 380959 - protein coding gene sortilin-related VPS10 domain containing receptor 2
Tssr50719 5 36036958 to 36036974 16 - TSS region transcription start site region 50719
Tssr50720 5 36036974 to 36036994 20 - TSS region transcription start site region 50720
Tssr50721 5 36037029 to 36037041 12 - TSS region transcription start site region 50721
Tssr45973 5 36048655 to 36048660 5 + TSS region transcription start site region 45973
D5Ertd422e 5 36110746 to 36110979 233 DNA segment DNA segment, Chr 5, ERATO Doi 422, expressed
Tssr50722 5 36146790 to 36146794 4 - TSS region transcription start site region 50722
Tssr50723 5 36152928 to 36152958 30 - TSS region transcription start site region 50723
Tssr45974 5 36164040 to 36164044 4 + TSS region transcription start site region 45974
Gm32183 5 36164922 to 36165988 1066 + lncRNA gene predicted gene, 32183
Tssr50724 5 36165012 to 36165021 9 - TSS region transcription start site region 50724
Gm32119 5 36178563 to 36179281 718 - lncRNA gene predicted gene, 32119
Gm31945 5 36179449 to 36189567 10118 + lncRNA gene predicted gene, 31945
Tssr45975 5 36204016 to 36204027 11 + TSS region transcription start site region 45975
Psapl1 5 36204021 to 36206568 2547 + protein coding gene prosaposin-like 1
Tssr45976 5 36204036 to 36204043 7 + TSS region transcription start site region 45976
Tssr45977 5 36204047 to 36204063 16 + TSS region transcription start site region 45977
D5Jcs33 5 36230156 to 36230305 149 DNA segment DNA segment, Chr 5, John C. Schimenti 33
Tssr45978 5 36237717 to 36237727 10 + TSS region transcription start site region 45978
Tssr45979 5 36237741 to 36237782 41 + TSS region transcription start site region 45979
D5Jcs34 5 36259517 to 36259667 150 DNA segment DNA segment, Chr 5, John C. Schimenti 34
Tssr50725 5 36277756 to 36277769 13 - TSS region transcription start site region 50725
Mir7689 5 36301570 to 36301628 58 + miRNA gene microRNA 7689
D5Mit75 5 36304140 to 36304289 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 75
Tssr50726 5 36317547 to 36317550 3 - TSS region transcription start site region 50726
Tssr50727 5 36321635 to 36321648 13 - TSS region transcription start site region 50727
D5Jcs76 5 36328573 to 36328725 152 DNA segment DNA segment, Chr 5, John C. Schimenti 76
D5Jcs30 5 36340597 to 36340808 211 DNA segment DNA segment, Chr 5, John C. Schimenti 30
D5Jcs31 5 36355103 to 36355261 158 DNA segment DNA segment, Chr 5, John C. Schimenti 31
Tssr45980 5 36374658 to 36374698 40 + TSS region transcription start site region 45980
Tssr45981 5 36374874 to 36374883 9 + TSS region transcription start site region 45981
Tssr50728 5 36376938 to 36376981 43 - TSS region transcription start site region 50728
Cpgi15777 5 36397229 to 36398655 1426 CpG island CpG island 15777
Tssr50729 5 36397671 to 36397706 35 - TSS region transcription start site region 50729
Tssr50730 5 36398060 to 36398063 3 - TSS region transcription start site region 50730
Tssr50731 5 36398068 to 36398075 7 - TSS region transcription start site region 50731
Tssr50732 5 36398078 to 36398085 7 - TSS region transcription start site region 50732
Tssr50733 5 36398090 to 36398149 59 - TSS region transcription start site region 50733
D5Jcs32 5 36414526 to 36414680 154 DNA segment DNA segment, Chr 5, John C. Schimenti 32
2210406O10Rik 5 36447611 to 36464853 17242 - lincRNA gene RIKEN cDNA 2210406O10 gene
D5Mit288 5 36450901 to 36451015 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 288
D5Ertd521e 5 36463635 to 36463859 224 DNA segment DNA segment, Chr 5, ERATO Doi 521, expressed
Cpgi15778 5 36464413 to 36465646 1233 CpG island CpG island 15778
Tssr45982 5 36464792 to 36464797 5 + TSS region transcription start site region 45982
Tssr45983 5 36465158 to 36465196 38 + TSS region transcription start site region 45983
Grpel1 5 36465185 to 36474077 8892 + protein coding gene GrpE-like 1, mitochondrial
Tada2b 5 36473670 to 36484285 10615 - protein coding gene transcriptional adaptor 2B
Cpgi15779 5 36483299 to 36486204 2905 CpG island CpG island 15779
Tssr50734 5 36484234 to 36484302 68 - TSS region transcription start site region 50734
Tssr45984 5 36484578 to 36484620 42 + TSS region transcription start site region 45984
Ccdc96 5 36484588 to 36488171 3583 + protein coding gene coiled-coil domain containing 96
Tssr45985 5 36484623 to 36484634 11 + TSS region transcription start site region 45985
Tbc1d14 5 36490604 to 36586271 95667 - protein coding gene TBC1 domain family, member 14
Gm32528 5 36508511 to 36512447 3936 - lncRNA gene predicted gene, 32528
Tssr50735 5 36509371 to 36509380 9 - TSS region transcription start site region 50735
Cpgi15780 5 36530238 to 36530683 445 CpG island CpG island 15780
Tssr50736 5 36530489 to 36530587 98 - TSS region transcription start site region 50736
Tssr50737 5 36530610 to 36530629 19 - TSS region transcription start site region 50737
Tssr1462 5 36553290 to 36553297 7 - TSS region transcription start site region 1462
Tssr50738 5 36553322 to 36553358 36 - TSS region transcription start site region 50738
Tssr50739 5 36554041 to 36554051 10 - TSS region transcription start site region 50739
Tssr50740 5 36566562 to 36566567 5 - TSS region transcription start site region 50740
Cpgi15781 5 36581365 to 36582645 1280 CpG island CpG island 15781
Tssr50741 5 36581792 to 36581809 17 - TSS region transcription start site region 50741
Tssr50742 5 36581815 to 36581845 30 - TSS region transcription start site region 50742
Tssr50743 5 36582381 to 36582399 18 - TSS region transcription start site region 50743
Gm42936 5 36584788 to 36613739 28951 - unclassified non-coding RNA gene predicted gene 42936
Tssr50744 5 36586219 to 36586229 10 - TSS region transcription start site region 50744
Tssr50745 5 36586239 to 36586248 9 - TSS region transcription start site region 50745
D5Ertd579e 5 36600485 to 36696024 95539 - protein coding gene DNA segment, Chr 5, ERATO Doi 579, expressed
Tssr50746 5 36611740 to 36611746 6 - TSS region transcription start site region 50746
Gm42507 5 36618701 to 36621255 2554 + unclassified gene predicted gene 42507
Tssr50747 5 36621267 to 36621279 12 - TSS region transcription start site region 50747
rs 5 101113038 to 35578005 -65535033 heritable phenotypic marker recessive spotting