Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:35391260-35713964

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hmx1 5 35389108 to 35399730 10622 + protein coding gene H6 homeobox 1
4930442P19Rik 5 35390673 to 35391912 1239 - unclassified gene RIKEN cDNA 4930442P19 gene
Cpgi15766 5 35391167 to 35393250 2083 CpG island CpG island 15766
Tssr50690 5 35391906 to 35391918 12 - TSS region transcription start site region 50690
Tssr45946 5 35392838 to 35392842 4 + TSS region transcription start site region 45946
Tssr45947 5 35395656 to 35395662 6 + TSS region transcription start site region 45947
Gm43377 5 35396098 to 35396552 454 + unclassified gene predicted gene 43377
Cpgi15767 5 35397008 to 35398410 1402 CpG island CpG island 15767
Cpgi15768 5 35399582 to 35400168 586 CpG island CpG island 15768
Tssr50691 5 35399960 to 35399969 9 - TSS region transcription start site region 50691
Tssr50692 5 35400015 to 35400023 8 - TSS region transcription start site region 50692
D5Jcs49 5 35405754 to 35405912 158 DNA segment DNA segment, Chr 5, John C. Schimenti 49
Gm40283 5 35413349 to 35423688 10339 + lncRNA gene predicted gene, 40283
Tssr45948 5 35413349 to 35413376 27 + TSS region transcription start site region 45948
Cpgi15769 5 35448157 to 35448337 180 CpG island CpG island 15769
D5Mit126 5 35459246 to 35459357 111 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 126
Cpz 5 35502218 to 35525626 23408 - protein coding gene carboxypeptidase Z
Irm2 5 35518973 to 35518973 0 QTL inflammatory response modulator 2
Cpgi15770 5 35525357 to 35526004 647 CpG island CpG island 15770
Tssr50693 5 35525542 to 35525566 24 - TSS region transcription start site region 50693
Tssr50694 5 35525567 to 35525617 50 - TSS region transcription start site region 50694
Tssr50695 5 35525691 to 35525705 14 - TSS region transcription start site region 50695
Cpgi15771 5 35531688 to 35531873 185 CpG island CpG island 15771
D5Jcs50 5 35539769 to 35539923 154 DNA segment DNA segment, Chr 5, John C. Schimenti 50
Gm43860 5 35551260 to 35553964 2704 - unclassified gene predicted gene 43860
Plk-ps1 5 35554184 to 35555970 1786 + pseudogene polo like kinase, pseudogene 1
Trmt44 5 35556208 to 35575070 18862 - protein coding gene tRNA methyltransferase 44
Cpgi15772 5 35574495 to 35575261 766 CpG island CpG island 15772
Tssr50696 5 35575046 to 35575083 37 - TSS region transcription start site region 50696
Tssr45949 5 35575116 to 35575150 34 + TSS region transcription start site region 45949
D5Mit4 5 35578005 to 35578202 197 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 4
4931431C16Rik 5 35581227 to 35588763 7536 - antisense lncRNA gene RIKEN cDNA 4931431C16 gene
Cpgi15773 5 35582770 to 35583531 761 CpG island CpG island 15773
Acox3 5 35582964 to 35614208 31244 + protein coding gene acyl-Coenzyme A oxidase 3, pristanoyl
Tssr45950 5 35583018 to 35583110 92 + TSS region transcription start site region 45950
Tssr45951 5 35583689 to 35583711 22 + TSS region transcription start site region 45951
Tssr45952 5 35588018 to 35588042 24 + TSS region transcription start site region 45952
Tssr45953 5 35588043 to 35588044 1 + TSS region transcription start site region 45953
Tssr45954 5 35588050 to 35588052 2 + TSS region transcription start site region 45954
Tssr45955 5 35588057 to 35588068 11 + TSS region transcription start site region 45955
Tssr45956 5 35592076 to 35592088 12 + TSS region transcription start site region 45956
D5Mit352 5 35614967 to 35615076 109 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 352
D5Jcs51 5 35636379 to 35636537 158 DNA segment DNA segment, Chr 5, John C. Schimenti 51
Htra3 5 35652023 to 35679782 27759 - protein coding gene HtrA serine peptidase 3
Tssr50697 5 35652607 to 35652627 20 - TSS region transcription start site region 50697
Tssr50698 5 35652653 to 35652679 26 - TSS region transcription start site region 50698
Tssr50699 5 35654163 to 35654180 17 - TSS region transcription start site region 50699
Tssr50700 5 35663223 to 35663240 17 - TSS region transcription start site region 50700
Tssr50701 5 35663456 to 35663551 95 - TSS region transcription start site region 50701
Tssr50702 5 35663585 to 35663603 18 - TSS region transcription start site region 50702
Tssr50703 5 35663604 to 35663658 54 - TSS region transcription start site region 50703
Tssr50704 5 35663681 to 35663690 9 - TSS region transcription start site region 50704
Tssr50705 5 35663777 to 35663789 12 - TSS region transcription start site region 50705
Tssr50706 5 35664058 to 35664072 14 - TSS region transcription start site region 50706
Tssr50707 5 35671513 to 35671574 61 - TSS region transcription start site region 50707
Cpgi15774 5 35678632 to 35680073 1441 CpG island CpG island 15774
Tssr1461 5 35679389 to 35679414 25 - TSS region transcription start site region 1461
Tssr50708 5 35679416 to 35679537 121 - TSS region transcription start site region 50708
D5Jcs52 5 35685685 to 35685838 153 DNA segment DNA segment, Chr 5, John C. Schimenti 52
Sh3tc1 5 35697180 to 35739987 42807 - protein coding gene SH3 domain and tetratricopeptide repeats 1
rs 5 101113038 to 35578005 -65535033 heritable phenotypic marker recessive spotting