Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:35079185-35479218

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dok7 5 35056766 to 35087839 31073 + protein coding gene docking protein 7
Lrpap1 5 35091506 to 35105697 14191 - protein coding gene low density lipoprotein receptor-related protein associated protein 1
Tssr50683 5 35093105 to 35093122 17 - TSS region transcription start site region 50683
Tssr50684 5 35094907 to 35094918 11 - TSS region transcription start site region 50684
Tssr50685 5 35094980 to 35094996 16 - TSS region transcription start site region 50685
Tssr50686 5 35096018 to 35096029 11 - TSS region transcription start site region 50686
Tssr45933 5 35098147 to 35098167 20 + TSS region transcription start site region 45933
Tssr50687 5 35102421 to 35102432 11 - TSS region transcription start site region 50687
Tssr50688 5 35102503 to 35102520 17 - TSS region transcription start site region 50688
Cpgi15762 5 35105321 to 35106031 710 CpG island CpG island 15762
Tssr50689 5 35105691 to 35105720 29 - TSS region transcription start site region 50689
D5Jcs87 5 35119222 to 35119378 156 DNA segment DNA segment, Chr 5, John C. Schimenti 87
D5Jcs88 5 35126558 to 35126716 158 DNA segment DNA segment, Chr 5, John C. Schimenti 88
Cpgi15763 5 35129228 to 35129452 224 CpG island CpG island 15763
Gm31601 5 35159897 to 35161341 1444 - lncRNA gene predicted gene, 31601
Tgfbm1 5 35162921 to 35163081 160 QTL transforming growth factor beta, modifier 1
D5Mit268 5 35162921 to 35163081 160 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 268
Tssr45934 5 35166295 to 35166313 18 + TSS region transcription start site region 45934
Tssr45935 5 35166379 to 35166393 14 + TSS region transcription start site region 45935
Tssr45936 5 35166434 to 35166445 11 + TSS region transcription start site region 45936
Tssr45937 5 35166503 to 35166525 22 + TSS region transcription start site region 45937
Tssr45938 5 35200328 to 35200331 3 + TSS region transcription start site region 45938
Gm40281 5 35229668 to 35266232 36564 + lncRNA gene predicted gene, 40281
Cpgi15764 5 35278411 to 35281507 3096 CpG island CpG island 15764
Adra2c 5 35278566 to 35281763 3197 + protein coding gene adrenergic receptor, alpha 2c
Tssr45939 5 35278911 to 35278926 15 + TSS region transcription start site region 45939
Tssr45940 5 35279185 to 35279218 33 + TSS region transcription start site region 45940
D5Jcs37 5 35298636 to 35298785 149 DNA segment DNA segment, Chr 5, John C. Schimenti 37
Gm31656 5 35313971 to 35341774 27803 + lncRNA gene predicted gene, 31656
Tssr45941 5 35361549 to 35361565 16 + TSS region transcription start site region 45941
4930478P22Rik 5 35361553 to 35367677 6124 + lincRNA gene RIKEN cDNA 4930478P22 gene
D5Jcs38 5 35366007 to 35366156 149 DNA segment DNA segment, Chr 5, John C. Schimenti 38
E130018O15Rik 5 35379152 to 35388476 9324 - lincRNA gene RIKEN cDNA E130018O15 gene
Cpgi15765 5 35388059 to 35390063 2004 CpG island CpG island 15765
Tssr45942 5 35388844 to 35388882 38 + TSS region transcription start site region 45942
Tssr45943 5 35388927 to 35388932 5 + TSS region transcription start site region 45943
Tssr45944 5 35388963 to 35388974 11 + TSS region transcription start site region 45944
Tssr45945 5 35389018 to 35389031 13 + TSS region transcription start site region 45945
Hmx1 5 35389108 to 35399730 10622 + protein coding gene H6 homeobox 1
4930442P19Rik 5 35390673 to 35391912 1239 - unclassified gene RIKEN cDNA 4930442P19 gene
Cpgi15766 5 35391167 to 35393250 2083 CpG island CpG island 15766
Tssr50690 5 35391906 to 35391918 12 - TSS region transcription start site region 50690
Tssr45946 5 35392838 to 35392842 4 + TSS region transcription start site region 45946
Tssr45947 5 35395656 to 35395662 6 + TSS region transcription start site region 45947
Gm43377 5 35396098 to 35396552 454 + unclassified gene predicted gene 43377
Cpgi15767 5 35397008 to 35398410 1402 CpG island CpG island 15767
Cpgi15768 5 35399582 to 35400168 586 CpG island CpG island 15768
Tssr50691 5 35399960 to 35399969 9 - TSS region transcription start site region 50691
Tssr50692 5 35400015 to 35400023 8 - TSS region transcription start site region 50692
D5Jcs49 5 35405754 to 35405912 158 DNA segment DNA segment, Chr 5, John C. Schimenti 49
Gm40283 5 35413349 to 35423688 10339 + lncRNA gene predicted gene, 40283
Tssr45948 5 35413349 to 35413376 27 + TSS region transcription start site region 45948
Cpgi15769 5 35448157 to 35448337 180 CpG island CpG island 15769
D5Mit126 5 35459246 to 35459357 111 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 126