Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:34906906-35876918

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163 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5Letm1-Htt)1Jcs 5 33739675 to 34912534 1172859 chromosomal deletion deletion, Chr 5, John C Schimenti
Htt 5 34761740 to 34912534 150794 + protein coding gene huntingtin
Msantd1 5 34913571 to 34926991 13420 + protein coding gene Myb/SANT-like DNA-binding domain containing 1
Tssr45908 5 34917518 to 34917545 27 + TSS region transcription start site region 45908
D5Jcs85 5 34922747 to 34922904 157 DNA segment DNA segment, Chr 5, John C. Schimenti 85
D5Jcs86 5 34932867 to 34933030 163 DNA segment DNA segment, Chr 5, John C. Schimenti 86
Tssr50682 5 34942070 to 34942073 3 - TSS region transcription start site region 50682
Cpgi15760 5 34948748 to 34950198 1450 CpG island CpG island 15760
Tssr45909 5 34949364 to 34949369 5 + TSS region transcription start site region 45909
Tssr45910 5 34949435 to 34949504 69 + TSS region transcription start site region 45910
Rgs12 5 34949445 to 35039644 90199 + protein coding gene regulator of G-protein signaling 12
Tssr45911 5 34974814 to 34974825 11 + TSS region transcription start site region 45911
Tssr45912 5 34974981 to 34974999 18 + TSS region transcription start site region 45912
Tssr45913 5 34975132 to 34975173 41 + TSS region transcription start site region 45913
Tssr45914 5 34975244 to 34975256 12 + TSS region transcription start site region 45914
Tssr45915 5 34989383 to 34989403 20 + TSS region transcription start site region 45915
Tssr45916 5 34989536 to 34989545 9 + TSS region transcription start site region 45916
Tssr45917 5 34989630 to 34989675 45 + TSS region transcription start site region 45917
Tssr45918 5 34989697 to 34989719 22 + TSS region transcription start site region 45918
Tssr45919 5 34989726 to 34989776 50 + TSS region transcription start site region 45919
Tssr45920 5 34999046 to 34999069 23 + TSS region transcription start site region 45920
Tssr45921 5 34999070 to 34999086 16 + TSS region transcription start site region 45921
Tssr45922 5 34999111 to 34999117 6 + TSS region transcription start site region 45922
Mir3097 5 35021049 to 35021115 66 + miRNA gene microRNA 3097
Gm43791 5 35031870 to 35033445 1575 - antisense lncRNA gene predicted gene 43791
Hgfac 5 35041509 to 35048461 6952 + protein coding gene hepatocyte growth factor activator
Tssr45923 5 35041539 to 35041595 56 + TSS region transcription start site region 45923
Tssr45924 5 35041622 to 35041653 31 + TSS region transcription start site region 45924
Tssr45925 5 35042287 to 35042334 47 + TSS region transcription start site region 45925
Tssr45926 5 35042421 to 35042435 14 + TSS region transcription start site region 45926
Tssr45927 5 35042554 to 35042568 14 + TSS region transcription start site region 45927
Tssr45928 5 35045263 to 35045271 8 + TSS region transcription start site region 45928
Tssr45929 5 35045275 to 35045285 10 + TSS region transcription start site region 45929
Tssr45930 5 35046483 to 35046493 10 + TSS region transcription start site region 45930
Cpgi15761 5 35056261 to 35057755 1494 CpG island CpG island 15761
Dok7 5 35056766 to 35087839 31073 + protein coding gene docking protein 7
Tssr45931 5 35056850 to 35056895 45 + TSS region transcription start site region 45931
Tssr45932 5 35057059 to 35057096 37 + TSS region transcription start site region 45932
D5Mit420b 5 35065210 to 35065354 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 420b
D5Mit420a 5 35065210 to 35065331 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 420a
Lrpap1 5 35091506 to 35105697 14191 - protein coding gene low density lipoprotein receptor-related protein associated protein 1
Tssr50683 5 35093105 to 35093122 17 - TSS region transcription start site region 50683
Tssr50684 5 35094907 to 35094918 11 - TSS region transcription start site region 50684
Tssr50685 5 35094980 to 35094996 16 - TSS region transcription start site region 50685
Tssr50686 5 35096018 to 35096029 11 - TSS region transcription start site region 50686
Tssr45933 5 35098147 to 35098167 20 + TSS region transcription start site region 45933
Tssr50687 5 35102421 to 35102432 11 - TSS region transcription start site region 50687
Tssr50688 5 35102503 to 35102520 17 - TSS region transcription start site region 50688
Cpgi15762 5 35105321 to 35106031 710 CpG island CpG island 15762
Tssr50689 5 35105691 to 35105720 29 - TSS region transcription start site region 50689
D5Jcs87 5 35119222 to 35119378 156 DNA segment DNA segment, Chr 5, John C. Schimenti 87
D5Jcs88 5 35126558 to 35126716 158 DNA segment DNA segment, Chr 5, John C. Schimenti 88
Cpgi15763 5 35129228 to 35129452 224 CpG island CpG island 15763
Gm31601 5 35159897 to 35161341 1444 - lncRNA gene predicted gene, 31601
Tgfbm1 5 35162921 to 35163081 160 QTL transforming growth factor beta, modifier 1
D5Mit268 5 35162921 to 35163081 160 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 268
Tssr45934 5 35166295 to 35166313 18 + TSS region transcription start site region 45934
Tssr45935 5 35166379 to 35166393 14 + TSS region transcription start site region 45935
Tssr45936 5 35166434 to 35166445 11 + TSS region transcription start site region 45936
Tssr45937 5 35166503 to 35166525 22 + TSS region transcription start site region 45937
Tssr45938 5 35200328 to 35200331 3 + TSS region transcription start site region 45938
Gm40281 5 35229668 to 35266232 36564 + lncRNA gene predicted gene, 40281
Cpgi15764 5 35278411 to 35281507 3096 CpG island CpG island 15764
Adra2c 5 35278566 to 35281763 3197 + protein coding gene adrenergic receptor, alpha 2c
Tssr45939 5 35278911 to 35278926 15 + TSS region transcription start site region 45939
Tssr45940 5 35279185 to 35279218 33 + TSS region transcription start site region 45940
D5Jcs37 5 35298636 to 35298785 149 DNA segment DNA segment, Chr 5, John C. Schimenti 37
Gm31656 5 35313971 to 35341774 27803 + lncRNA gene predicted gene, 31656
Tssr45941 5 35361549 to 35361565 16 + TSS region transcription start site region 45941
4930478P22Rik 5 35361553 to 35367677 6124 + lincRNA gene RIKEN cDNA 4930478P22 gene
D5Jcs38 5 35366007 to 35366156 149 DNA segment DNA segment, Chr 5, John C. Schimenti 38
E130018O15Rik 5 35379152 to 35388476 9324 - lincRNA gene RIKEN cDNA E130018O15 gene
Cpgi15765 5 35388059 to 35390063 2004 CpG island CpG island 15765
Tssr45942 5 35388844 to 35388882 38 + TSS region transcription start site region 45942
Tssr45943 5 35388927 to 35388932 5 + TSS region transcription start site region 45943
Tssr45944 5 35388963 to 35388974 11 + TSS region transcription start site region 45944
Tssr45945 5 35389018 to 35389031 13 + TSS region transcription start site region 45945
Hmx1 5 35389108 to 35399730 10622 + protein coding gene H6 homeobox 1
4930442P19Rik 5 35390673 to 35391912 1239 - unclassified gene RIKEN cDNA 4930442P19 gene
Cpgi15766 5 35391167 to 35393250 2083 CpG island CpG island 15766
Tssr50690 5 35391906 to 35391918 12 - TSS region transcription start site region 50690
Tssr45946 5 35392838 to 35392842 4 + TSS region transcription start site region 45946
Tssr45947 5 35395656 to 35395662 6 + TSS region transcription start site region 45947
Gm43377 5 35396098 to 35396552 454 + unclassified gene predicted gene 43377
Cpgi15767 5 35397008 to 35398410 1402 CpG island CpG island 15767
Cpgi15768 5 35399582 to 35400168 586 CpG island CpG island 15768
Tssr50691 5 35399960 to 35399969 9 - TSS region transcription start site region 50691
Tssr50692 5 35400015 to 35400023 8 - TSS region transcription start site region 50692
D5Jcs49 5 35405754 to 35405912 158 DNA segment DNA segment, Chr 5, John C. Schimenti 49
Gm40283 5 35413349 to 35423688 10339 + lncRNA gene predicted gene, 40283
Tssr45948 5 35413349 to 35413376 27 + TSS region transcription start site region 45948
Cpgi15769 5 35448157 to 35448337 180 CpG island CpG island 15769
D5Mit126 5 35459246 to 35459357 111 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 126
Cpz 5 35502218 to 35525626 23408 - protein coding gene carboxypeptidase Z
Irm2 5 35518973 to 35518973 0 QTL inflammatory response modulator 2
Cpgi15770 5 35525357 to 35526004 647 CpG island CpG island 15770
Tssr50693 5 35525542 to 35525566 24 - TSS region transcription start site region 50693
Tssr50694 5 35525567 to 35525617 50 - TSS region transcription start site region 50694
Tssr50695 5 35525691 to 35525705 14 - TSS region transcription start site region 50695
Cpgi15771 5 35531688 to 35531873 185 CpG island CpG island 15771
D5Jcs50 5 35539769 to 35539923 154 DNA segment DNA segment, Chr 5, John C. Schimenti 50
Gm43860 5 35551260 to 35553964 2704 - unclassified gene predicted gene 43860
Plk-ps1 5 35554184 to 35555970 1786 + pseudogene polo like kinase, pseudogene 1
Trmt44 5 35556208 to 35575070 18862 - protein coding gene tRNA methyltransferase 44
Cpgi15772 5 35574495 to 35575261 766 CpG island CpG island 15772
Tssr50696 5 35575046 to 35575083 37 - TSS region transcription start site region 50696
Tssr45949 5 35575116 to 35575150 34 + TSS region transcription start site region 45949
D5Mit4 5 35578005 to 35578202 197 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 4
4931431C16Rik 5 35581227 to 35588763 7536 - antisense lncRNA gene RIKEN cDNA 4931431C16 gene
Cpgi15773 5 35582770 to 35583531 761 CpG island CpG island 15773
Acox3 5 35582964 to 35614208 31244 + protein coding gene acyl-Coenzyme A oxidase 3, pristanoyl
Tssr45950 5 35583018 to 35583110 92 + TSS region transcription start site region 45950
Tssr45951 5 35583689 to 35583711 22 + TSS region transcription start site region 45951
Tssr45952 5 35588018 to 35588042 24 + TSS region transcription start site region 45952
Tssr45953 5 35588043 to 35588044 1 + TSS region transcription start site region 45953
Tssr45954 5 35588050 to 35588052 2 + TSS region transcription start site region 45954
Tssr45955 5 35588057 to 35588068 11 + TSS region transcription start site region 45955
Tssr45956 5 35592076 to 35592088 12 + TSS region transcription start site region 45956
D5Mit352 5 35614967 to 35615076 109 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 352
D5Jcs51 5 35636379 to 35636537 158 DNA segment DNA segment, Chr 5, John C. Schimenti 51
Htra3 5 35652023 to 35679782 27759 - protein coding gene HtrA serine peptidase 3
Tssr50697 5 35652607 to 35652627 20 - TSS region transcription start site region 50697
Tssr50698 5 35652653 to 35652679 26 - TSS region transcription start site region 50698
Tssr50699 5 35654163 to 35654180 17 - TSS region transcription start site region 50699
Tssr50700 5 35663223 to 35663240 17 - TSS region transcription start site region 50700
Tssr50701 5 35663456 to 35663551 95 - TSS region transcription start site region 50701
Tssr50702 5 35663585 to 35663603 18 - TSS region transcription start site region 50702
Tssr50703 5 35663604 to 35663658 54 - TSS region transcription start site region 50703
Tssr50704 5 35663681 to 35663690 9 - TSS region transcription start site region 50704
Tssr50705 5 35663777 to 35663789 12 - TSS region transcription start site region 50705
Tssr50706 5 35664058 to 35664072 14 - TSS region transcription start site region 50706
Tssr50707 5 35671513 to 35671574 61 - TSS region transcription start site region 50707
Cpgi15774 5 35678632 to 35680073 1441 CpG island CpG island 15774
Tssr1461 5 35679389 to 35679414 25 - TSS region transcription start site region 1461
Tssr50708 5 35679416 to 35679537 121 - TSS region transcription start site region 50708
D5Jcs52 5 35685685 to 35685838 153 DNA segment DNA segment, Chr 5, John C. Schimenti 52
Sh3tc1 5 35697180 to 35739987 42807 - protein coding gene SH3 domain and tetratricopeptide repeats 1
Gm31888 5 35719108 to 35722320 3212 + lncRNA gene predicted gene, 31888
Tssr50709 5 35722464 to 35722485 21 - TSS region transcription start site region 50709
Gm15650 5 35722555 to 35724485 1930 + antisense lncRNA gene predicted gene 15650
Tssr50710 5 35722607 to 35722615 8 - TSS region transcription start site region 50710
Tssr45957 5 35728408 to 35728412 4 + TSS region transcription start site region 45957
Tssr50711 5 35729007 to 35729016 9 - TSS region transcription start site region 50711
Tssr50712 5 35729022 to 35729039 17 - TSS region transcription start site region 50712
Tssr50713 5 35729048 to 35729078 30 - TSS region transcription start site region 50713
Tssr50714 5 35729088 to 35729095 7 - TSS region transcription start site region 50714
Tssr50715 5 35729260 to 35729286 26 - TSS region transcription start site region 50715
Tssr50716 5 35729290 to 35729312 22 - TSS region transcription start site region 50716
D5Jcs53 5 35737885 to 35738039 154 DNA segment DNA segment, Chr 5, John C. Schimenti 53
Tssr50717 5 35740025 to 35740056 31 - TSS region transcription start site region 50717
Cpgi15775 5 35756955 to 35758695 1740 CpG island CpG island 15775
D5Jcs39 5 35757329 to 35757478 149 DNA segment DNA segment, Chr 5, John C. Schimenti 39
Tssr45958 5 35757875 to 35757946 71 + TSS region transcription start site region 45958
Ablim2 5 35757880 to 35884973 127093 + protein coding gene actin-binding LIM protein 2
Tssr45959 5 35757951 to 35757966 15 + TSS region transcription start site region 45959
Tssr45960 5 35786151 to 35786178 27 + TSS region transcription start site region 45960
Tssr50718 5 35790621 to 35790641 20 - TSS region transcription start site region 50718
Tssr45961 5 35814356 to 35814371 15 + TSS region transcription start site region 45961
Tssr45962 5 35814375 to 35814400 25 + TSS region transcription start site region 45962
Tssr45963 5 35814424 to 35814453 29 + TSS region transcription start site region 45963
Tssr45964 5 35814455 to 35814482 27 + TSS region transcription start site region 45964
D5Mit76 5 35853866 to 35854015 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 76
rs 5 101113038 to 35578005 -65535033 heritable phenotypic marker recessive spotting