Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:3419708-5269713

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdk6 5 3343893 to 3531008 187115 + protein coding gene cyclin-dependent kinase 6
Gm29868 5 3393492 to 3435896 42404 - lncRNA gene predicted gene, 29868
Tssr49984 5 3461109 to 3461113 4 - TSS region transcription start site region 49984
Gm17590 5 3472861 to 3480873 8012 - antisense lncRNA gene predicted gene, 17590
Tssr45040 5 3474943 to 3474956 13 + TSS region transcription start site region 45040
Tssr45041 5 3479707 to 3479724 17 + TSS region transcription start site region 45041
Tssr49985 5 3480863 to 3480884 21 - TSS region transcription start site region 49985
Tssr45042 5 3494611 to 3494651 40 + TSS region transcription start site region 45042
Tssr1411 5 3494921 to 3494934 13 + TSS region transcription start site region 1411
Tssr45043 5 3497841 to 3497877 36 + TSS region transcription start site region 45043
Gm42435 5 3498625 to 3500072 1447 - antisense lncRNA gene predicted gene 42435
Tssr49986 5 3501654 to 3501664 10 - TSS region transcription start site region 49986
Tssr1412 5 3501699 to 3501710 11 - TSS region transcription start site region 1412
Tssr45044 5 3501997 to 3502008 11 + TSS region transcription start site region 45044
Tssr45045 5 3502045 to 3502053 8 + TSS region transcription start site region 45045
Tssr49987 5 3502574 to 3502588 14 - TSS region transcription start site region 49987
Tssr45046 5 3502804 to 3502835 31 + TSS region transcription start site region 45046
Tssr45047 5 3515189 to 3515238 49 + TSS region transcription start site region 45047
Tssr45048 5 3521581 to 3521601 20 + TSS region transcription start site region 45048
Tssr45049 5 3522260 to 3522265 5 + TSS region transcription start site region 45049
Tssr45050 5 3527058 to 3527093 35 + TSS region transcription start site region 45050
D5Mit69 5 3527185 to 3527321 136 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 69
Cpgi15509 5 3543564 to 3544433 869 CpG island CpG island 15509
Tssr45051 5 3543812 to 3543853 41 + TSS region transcription start site region 45051
Fam133b 5 3543833 to 3570238 26405 + protein coding gene family with sequence similarity 133, member B
Tssr45052 5 3543862 to 3543884 22 + TSS region transcription start site region 45052
Gm43017 5 3544037 to 3544788 751 + sense intronic lncRNA gene predicted gene 43017
Tssr45053 5 3544082 to 3544112 30 + TSS region transcription start site region 45053
Tssr45054 5 3554670 to 3554684 14 + TSS region transcription start site region 45054
Tssr45055 5 3557740 to 3557753 13 + TSS region transcription start site region 45055
n-R5s169 5 3561154 to 3561273 119 + rRNA gene nuclear encoded rRNA 5S 169
Tssr1413 5 3571560 to 3571564 4 + TSS region transcription start site region 1413
Tssr45056 5 3571572 to 3571580 8 + TSS region transcription start site region 45056
Tssr45057 5 3571590 to 3571610 20 + TSS region transcription start site region 45057
Tssr45058 5 3571664 to 3571671 7 + TSS region transcription start site region 45058
Tssr45059 5 3571676 to 3571692 16 + TSS region transcription start site region 45059
1700109H08Rik 5 3571716 to 3584341 12625 + protein coding gene RIKEN cDNA 1700109H08 gene
4833441D16Rik 5 3573053 to 3573546 493 unclassified gene RIKEN cDNA 4833441D16 gene
Tssr45060 5 3578207 to 3578223 16 + TSS region transcription start site region 45060
Rbm48 5 3583978 to 3596547 12569 - protein coding gene RNA binding motif protein 48
2510017J16Rik 5 3585112 to 3586374 1262 + antisense lncRNA gene RIKEN cDNA 2510017J16 gene
Cpgi15510 5 3595791 to 3596889 1098 CpG island CpG island 15510
Pex1 5 3596066 to 3637230 41164 + protein coding gene peroxisomal biogenesis factor 1
Tssr49988 5 3596071 to 3596118 47 - TSS region transcription start site region 49988
Tssr45061 5 3596204 to 3596256 52 + TSS region transcription start site region 45061
Tssr45062 5 3596306 to 3596393 87 + TSS region transcription start site region 45062
Tssr49989 5 3596540 to 3596579 39 - TSS region transcription start site region 49989
Gm43825 5 3624630 to 3625363 733 - antisense lncRNA gene predicted gene 43825
4833413G10Rik 5 3629777 to 3631722 1945 - antisense lncRNA gene RIKEN cDNA 4833413G10 gene
Gatad1 5 3639961 to 3647936 7975 - protein coding gene GATA zinc finger domain containing 1
Tssr49990 5 3640744 to 3640748 4 - TSS region transcription start site region 49990
Tssr49991 5 3641432 to 3641471 39 - TSS region transcription start site region 49991
Cpgi15511 5 3647155 to 3648107 952 CpG island CpG island 15511
Tssr49992 5 3647720 to 3647733 13 - TSS region transcription start site region 49992
Tssr49993 5 3647838 to 3648009 171 - TSS region transcription start site region 49993
Tssr49994 5 3648013 to 3648038 25 - TSS region transcription start site region 49994
Tssr49995 5 3648045 to 3648074 29 - TSS region transcription start site region 49995
Gm26238 5 3652544 to 3652660 116 + miRNA gene predicted gene, 26238
Tmbim7 5 3657004 to 3679865 22861 + protein coding gene transmembrane BAX inhibitor motif containing 7
Tssr49996 5 3657164 to 3657177 13 - TSS region transcription start site region 49996
Tssr45063 5 3657172 to 3657186 14 + TSS region transcription start site region 45063
Tssr45064 5 3657187 to 3657205 18 + TSS region transcription start site region 45064
Tssr45065 5 3657212 to 3657217 5 + TSS region transcription start site region 45065
Ankib1 5 3690000 to 3802925 112925 - protein coding gene ankyrin repeat and IBR domain containing 1
Gm22926 5 3695964 to 3696031 67 + miRNA gene predicted gene, 22926
Cpgi15512 5 3733057 to 3733266 209 CpG island CpG island 15512
D5Mit330 5 3744808 to 3744899 91 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 330
Gm43679 5 3751901 to 3755577 3676 - unclassified gene predicted gene 43679
Cpgi15513 5 3802145 to 3803802 1657 CpG island CpG island 15513
Tssr49997 5 3802858 to 3802875 17 - TSS region transcription start site region 49997
Tssr49998 5 3803062 to 3803079 17 - TSS region transcription start site region 49998
Tssr49999 5 3803081 to 3803119 38 - TSS region transcription start site region 49999
Tssr45066 5 3803160 to 3803193 33 + TSS region transcription start site region 45066
Krit1 5 3803165 to 3844515 41350 + protein coding gene KRIT1, ankyrin repeat containing
Tssr45067 5 3803195 to 3803206 11 + TSS region transcription start site region 45067
Tssr1414 5 3803209 to 3803220 11 + TSS region transcription start site region 1414
Tssr45068 5 3806058 to 3806062 4 + TSS region transcription start site region 45068
Cpgi15514 5 3844945 to 3845449 504 CpG island CpG island 15514
Tssr50000 5 3845017 to 3845050 33 - TSS region transcription start site region 50000
Tssr45069 5 3845171 to 3845192 21 + TSS region transcription start site region 45069
Lrrd1 5 3845173 to 3866596 21423 + protein coding gene leucine rich repeats and death domain containing 1
Tssr45070 5 3845195 to 3845202 7 + TSS region transcription start site region 45070
Rps4x-ps 5 3875362 to 3876154 792 + pseudogene Rps4x retrotransposed pseudogene
Mterf1a 5 3890581 to 3893933 3352 - protein coding gene mitochondrial transcription termination factor 1a
Tssr45071 5 3909290 to 3909299 9 + TSS region transcription start site region 45071
Tssr45072 5 3909310 to 3909321 11 + TSS region transcription start site region 45072
Tssr1415 5 3927533 to 3927544 11 + TSS region transcription start site region 1415
Tssr45073 5 3927821 to 3927843 22 + TSS region transcription start site region 45073
Akap9 5 3927827 to 4080204 152377 + protein coding gene A kinase (PRKA) anchor protein (yotiao) 9
Tssr45074 5 3927857 to 3927888 31 + TSS region transcription start site region 45074
Cpgi15515 5 3927864 to 3928991 1127 CpG island CpG island 15515
Tssr45075 5 3928033 to 3928103 70 + TSS region transcription start site region 45075
Tssr45076 5 3928267 to 3928300 33 + TSS region transcription start site region 45076
Tssr45077 5 3936518 to 3936522 4 + TSS region transcription start site region 45077
Tssr45078 5 3957736 to 3957754 18 + TSS region transcription start site region 45078
Tssr45079 5 3981382 to 3981386 4 + TSS region transcription start site region 45079
Wdr46-ps 5 3989005 to 3990705 1700 + pseudogene Wdr46 retrotransposed pseudogene
Tssr45080 5 3995033 to 3995035 2 + TSS region transcription start site region 45080
Tssr45081 5 4005314 to 4005336 22 + TSS region transcription start site region 45081
Tssr45082 5 4023304 to 4023318 14 + TSS region transcription start site region 45082
Tssr45083 5 4023343 to 4023357 14 + TSS region transcription start site region 45083
Tssr45084 5 4038983 to 4039001 18 + TSS region transcription start site region 45084
Gm40260 5 4073414 to 4077829 4415 - lncRNA gene predicted gene, 40260
Gm43031 5 4073571 to 4075457 1886 + sense intronic lncRNA gene predicted gene 43031
Cyp51 5 4081145 to 4104746 23601 - protein coding gene cytochrome P450, family 51
Cpgi15516 5 4103576 to 4105010 1434 CpG island CpG island 15516
Tssr50001 5 4104391 to 4104443 52 - TSS region transcription start site region 50001
Tssr50002 5 4104447 to 4104462 15 - TSS region transcription start site region 50002
Tssr50003 5 4104483 to 4104492 9 - TSS region transcription start site region 50003
Tssr50004 5 4104598 to 4104624 26 - TSS region transcription start site region 50004
Tssr50005 5 4104631 to 4104642 11 - TSS region transcription start site region 50005
Tssr50006 5 4104654 to 4104792 138 - TSS region transcription start site region 50006
Tssr50007 5 4115094 to 4115113 19 - TSS region transcription start site region 50007
Mterf1b 5 4192367 to 4197651 5284 + protein coding gene mitochondrial transcription termination factor 1b
Pbwg14 5 4223455 to 4223552 97 QTL postnatal body weight growth 14
D5Mit345 5 4223455 to 4223552 97 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 345
D5Mit193 5 4232826 to 4232961 135 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 193
D5Mit331 5 4246959 to 4247065 106 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 331
Gm40261 5 4273277 to 4317978 44701 + lncRNA gene predicted gene, 40261
Tssr45085 5 4333448 to 4333452 4 + TSS region transcription start site region 45085
Tssr45086 5 4344708 to 4344713 5 + TSS region transcription start site region 45086
D5Mit249 5 4586369 to 4586511 142 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 249
Fzd1 5 4753839 to 4758035 4196 - protein coding gene frizzled class receptor 1
Cpgi15517 5 4755765 to 4758387 2622 CpG island CpG island 15517
Tssr50008 5 4757797 to 4757806 9 - TSS region transcription start site region 50008
Tssr50009 5 4757875 to 4757887 12 - TSS region transcription start site region 50009
Tssr50010 5 4757908 to 4757920 12 - TSS region transcription start site region 50010
Tssr50011 5 4757926 to 4757936 10 - TSS region transcription start site region 50011
Tssr50012 5 4757977 to 4757995 18 - TSS region transcription start site region 50012
Tssr50013 5 4757999 to 4758022 23 - TSS region transcription start site region 50013
Tssr50014 5 4758026 to 4758045 19 - TSS region transcription start site region 50014
Gm15750 5 4764834 to 4765665 831 + pseudogene predicted gene 15750
Tssr50015 5 4779936 to 4779937 1 - TSS region transcription start site region 50015
Gm42744 5 4784753 to 4799094 14341 - lincRNA gene predicted gene 42744
Tssr50016 5 4799092 to 4799097 5 - TSS region transcription start site region 50016
Gm44483 5 4802457 to 4802553 96 + miRNA gene predicted gene, 44483
Cdk14 5 4803384 to 5380251 576867 - protein coding gene cyclin-dependent kinase 14
Tssr50017 5 4803633 to 4803638 5 - TSS region transcription start site region 50017
Tssr50018 5 4804528 to 4804545 17 - TSS region transcription start site region 50018
Gm43112 5 4819506 to 4822627 3121 - sense intronic lncRNA gene predicted gene 43112
Gm43113 5 4826340 to 4828093 1753 - sense intronic lncRNA gene predicted gene 43113
Tssr50019 5 4832692 to 4832728 36 - TSS region transcription start site region 50019
Gm25037 5 4854314 to 4854423 109 - miRNA gene predicted gene, 25037
Gm43111 5 4868348 to 4870266 1918 - sense intronic lncRNA gene predicted gene 43111
Tssr50020 5 4875680 to 4875691 11 - TSS region transcription start site region 50020
D5Mit346.1 5 4879428 to 4879555 127 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 346.1
Eye1 5 4879531 to 4879650 119 QTL eye weight 1
D5Mit346 5 4879531 to 4879650 119 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 346
Gm22897 5 4985111 to 4985237 126 - snoRNA gene predicted gene, 22897
D5Mit343.2 5 5005213 to 5005364 151 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 343.2
Tssr50021 5 5076242 to 5076276 34 - TSS region transcription start site region 50021
Tssr50022 5 5108443 to 5108447 4 - TSS region transcription start site region 50022
Tssr50023 5 5120018 to 5120022 4 - TSS region transcription start site region 50023
Gm43623 5 5137445 to 5140107 2662 - unclassified non-coding RNA gene predicted gene 43623
Gm43577 5 5154571 to 5157914 3343 - sense intronic lncRNA gene predicted gene 43577
Gm10484 5 5170394 to 5175152 4758 - sense intronic lncRNA gene predicted gene 10484
D5Mit49 5 5172736 to 5172867 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 49
Tssr50024 5 5215864 to 5215868 4 - TSS region transcription start site region 50024
Tssr50025 5 5262109 to 5262132 23 - TSS region transcription start site region 50025
Tssr50026 5 5265224 to 5265234 10 - TSS region transcription start site region 50026
Tssr50027 5 5265669 to 5265683 14 - TSS region transcription start site region 50027
Tssr50028 5 5265696 to 5265697 1 - TSS region transcription start site region 50028
Tssr50029 5 5265699 to 5265720 21 - TSS region transcription start site region 50029
Tssr50030 5 5265723 to 5265728 5 - TSS region transcription start site region 50030
Tssr50031 5 5265790 to 5265806 16 - TSS region transcription start site region 50031
Tssr50032 5 5265967 to 5266031 64 - TSS region transcription start site region 50032
Tssr50033 5 5266038 to 5266083 45 - TSS region transcription start site region 50033