Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:34139437-34979472

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5Letm1-Htt)1Jcs 5 33739675 to 34912534 1172859 chromosomal deletion deletion, Chr 5, John C Schimenti
Poln 5 34007179 to 34169448 162269 - protein coding gene DNA polymerase N
Haus3 5 34153896 to 34169424 15528 - protein coding gene HAUS augmin-like complex, subunit 3
Tssr50629 5 34157257 to 34157261 4 - TSS region transcription start site region 50629
Gm25918 5 34162324 to 34162426 102 + snRNA gene predicted gene, 25918
Tssr50630 5 34165029 to 34165034 5 - TSS region transcription start site region 50630
Tssr50631 5 34169024 to 34169035 11 - TSS region transcription start site region 50631
Cpgi15747 5 34169141 to 34169918 777 CpG island CpG island 15747
Tssr50632 5 34169409 to 34169466 57 - TSS region transcription start site region 50632
Tssr50633 5 34169523 to 34169534 11 - TSS region transcription start site region 50633
Tssr45858 5 34169732 to 34169764 32 + TSS region transcription start site region 45858
Tssr50634 5 34171714 to 34171718 4 - TSS region transcription start site region 50634
Gm42846 5 34173887 to 34174887 1000 + antisense lncRNA gene predicted gene 42846
Mxd4 5 34176580 to 34187710 11130 - protein coding gene Max dimerization protein 4
Cpgi15748 5 34186539 to 34188399 1860 CpG island CpG island 15748
Tssr50635 5 34187052 to 34187065 13 - TSS region transcription start site region 50635
Tssr50636 5 34187074 to 34187083 9 - TSS region transcription start site region 50636
Tssr50637 5 34187085 to 34187105 20 - TSS region transcription start site region 50637
Tssr50638 5 34187628 to 34187643 15 - TSS region transcription start site region 50638
Tssr50639 5 34187644 to 34187669 25 - TSS region transcription start site region 50639
Tssr50640 5 34187670 to 34187749 79 - TSS region transcription start site region 50640
Tssr50641 5 34187870 to 34187896 26 - TSS region transcription start site region 50641
Tssr45859 5 34188057 to 34188119 62 + TSS region transcription start site region 45859
Zfyve28 5 34194893 to 34288449 93556 - protein coding gene zinc finger, FYVE domain containing 28
Tssr50642 5 34196462 to 34196476 14 - TSS region transcription start site region 50642
Tssr50643 5 34196596 to 34196637 41 - TSS region transcription start site region 50643
Tssr45860 5 34196790 to 34196793 3 + TSS region transcription start site region 45860
Tssr45861 5 34196803 to 34196817 14 + TSS region transcription start site region 45861
Gm15513 5 34211810 to 34213802 1992 - sense intronic lncRNA gene predicted gene 15513
Tssr50644 5 34215146 to 34215150 4 - TSS region transcription start site region 50644
Tssr50645 5 34220160 to 34220162 2 - TSS region transcription start site region 50645
Gm42848 5 34221162 to 34225984 4822 + antisense lncRNA gene predicted gene 42848
Tssr50646 5 34232560 to 34232587 27 - TSS region transcription start site region 50646
Tssr50647 5 34233013 to 34233035 22 - TSS region transcription start site region 50647
D5Jcs47 5 34237302 to 34237443 141 DNA segment DNA segment, Chr 5, John C. Schimenti 47
Tssr50648 5 34242464 to 34242491 27 - TSS region transcription start site region 50648
Tssr45862 5 34242835 to 34242847 12 + TSS region transcription start site region 45862
Tssr50649 5 34243350 to 34243364 14 - TSS region transcription start site region 50649
Tssr50650 5 34243404 to 34243418 14 - TSS region transcription start site region 50650
Tssr50651 5 34243465 to 34243528 63 - TSS region transcription start site region 50651
Tssr50652 5 34243531 to 34243553 22 - TSS region transcription start site region 50652
Tssr45863 5 34278808 to 34278815 7 + TSS region transcription start site region 45863
Cpgi15749 5 34286971 to 34289134 2163 CpG island CpG island 15749
Tssr50653 5 34288286 to 34288305 19 - TSS region transcription start site region 50653
Tssr50654 5 34288318 to 34288372 54 - TSS region transcription start site region 50654
Tssr50655 5 34288375 to 34288399 24 - TSS region transcription start site region 50655
Tssr50656 5 34288407 to 34288469 62 - TSS region transcription start site region 50656
Cfap99 5 34288600 to 34327327 38727 + protein coding gene cilia and flagella associated protein 99
Tssr45864 5 34288644 to 34288670 26 + TSS region transcription start site region 45864
Tssr45865 5 34288683 to 34288694 11 + TSS region transcription start site region 45865
Gm5553 5 34306343 to 34307866 1523 - pseudogene predicted gene 5553
Gm43105 5 34306718 to 34307176 458 - pseudogene predicted gene 43105
Gm43458 5 34309212 to 34327530 18318 - lincRNA gene predicted gene 43458
D5Jcs36 5 34324378 to 34324525 147 DNA segment DNA segment, Chr 5, John C. Schimenti 36
Cpgi15750 5 34326880 to 34327381 501 CpG island CpG island 15750
A830049F12Rik 5 34335123 to 34337181 2058 unclassified non-coding RNA gene RIKEN cDNA A830049F12 gene
Cpgi15751 5 34335723 to 34337253 1530 CpG island CpG island 15751
Tssr50657 5 34336134 to 34336161 27 - TSS region transcription start site region 50657
Tssr50658 5 34336170 to 34336224 54 - TSS region transcription start site region 50658
Rnf4 5 34336250 to 34353445 17195 + protein coding gene ring finger protein 4
Tssr45866 5 34336384 to 34336395 11 + TSS region transcription start site region 45866
Tssr45867 5 34336401 to 34336459 58 + TSS region transcription start site region 45867
Tssr50659 5 34336818 to 34336832 14 - TSS region transcription start site region 50659
Tssr50660 5 34336872 to 34336892 20 - TSS region transcription start site region 50660
Tssr45868 5 34336928 to 34336937 9 + TSS region transcription start site region 45868
Tssr45869 5 34336952 to 34336959 7 + TSS region transcription start site region 45869
Tssr45870 5 34336964 to 34337016 52 + TSS region transcription start site region 45870
Tssr45871 5 34352083 to 34352112 29 + TSS region transcription start site region 45871
Tssr45872 5 34363379 to 34363380 1 + TSS region transcription start site region 45872
Cpgi15752 5 34369338 to 34370837 1499 CpG island CpG island 15752
Tssr45873 5 34369894 to 34369905 11 + TSS region transcription start site region 45873
Tssr45874 5 34369909 to 34369970 61 + TSS region transcription start site region 45874
Fam193a 5 34369933 to 34486456 116523 + protein coding gene family with sequence homology 193, member A
Tssr45875 5 34462176 to 34462179 3 + TSS region transcription start site region 45875
Tssr45876 5 34462184 to 34462195 11 + TSS region transcription start site region 45876
Gm42559 5 34469664 to 34473195 3531 + unclassified gene predicted gene 42559
Gm26931 5 34481914 to 34482522 608 - pseudogene predicted gene, 26931
Gm43457 5 34487314 to 34489722 2408 + unclassified gene predicted gene 43457
Tssr50661 5 34495290 to 34495335 45 - TSS region transcription start site region 50661
Tnip2 5 34496096 to 34513979 17883 - protein coding gene TNFAIP3 interacting protein 2
Tssr50662 5 34500832 to 34500835 3 - TSS region transcription start site region 50662
Tssr50663 5 34504460 to 34504464 4 - TSS region transcription start site region 50663
D5Jcs81 5 34508661 to 34508821 160 DNA segment DNA segment, Chr 5, John C. Schimenti 81
Cpgi15753 5 34513271 to 34514163 892 CpG island CpG island 15753
Tssr50664 5 34513703 to 34513714 11 - TSS region transcription start site region 50664
Tssr50665 5 34513892 to 34513984 92 - TSS region transcription start site region 50665
Cpgi15754 5 34525701 to 34526191 490 CpG island CpG island 15754
Tssr45877 5 34525777 to 34525788 11 + TSS region transcription start site region 45877
Tssr45878 5 34525797 to 34525869 72 + TSS region transcription start site region 45878
Sh3bp2 5 34525838 to 34563641 37803 + protein coding gene SH3-domain binding protein 2
Tssr50666 5 34526160 to 34526165 5 - TSS region transcription start site region 50666
Tssr45879 5 34530648 to 34530651 3 + TSS region transcription start site region 45879
Gm22847 5 34530649 to 34530753 104 + snRNA gene predicted gene, 22847
Tssr45880 5 34531963 to 34531984 21 + TSS region transcription start site region 45880
Tssr45881 5 34536127 to 34536176 49 + TSS region transcription start site region 45881
Tssr45882 5 34543377 to 34543429 52 + TSS region transcription start site region 45882
Tssr45883 5 34543431 to 34543442 11 + TSS region transcription start site region 45883
Tssr45884 5 34547844 to 34547845 1 + TSS region transcription start site region 45884
Cpgi15755 5 34549384 to 34550224 840 CpG island CpG island 15755
Tssr45885 5 34549544 to 34549552 8 + TSS region transcription start site region 45885
Tssr45886 5 34549568 to 34549581 13 + TSS region transcription start site region 45886
Tssr45887 5 34549595 to 34549631 36 + TSS region transcription start site region 45887
D5Jcs82 5 34550205 to 34550370 165 DNA segment DNA segment, Chr 5, John C. Schimenti 82
Tssr45888 5 34557310 to 34557324 14 + TSS region transcription start site region 45888
Tssr45889 5 34559100 to 34559131 31 + TSS region transcription start site region 45889
Tssr45890 5 34559437 to 34559472 35 + TSS region transcription start site region 45890
Cpgi15756 5 34573298 to 34574409 1111 CpG island CpG island 15756
Tssr45891 5 34573694 to 34573737 43 + TSS region transcription start site region 45891
Add1 5 34573714 to 34632305 58591 + protein coding gene adducin 1 (alpha)
Tssr45892 5 34573744 to 34573792 48 + TSS region transcription start site region 45892
Tssr45893 5 34573808 to 34573875 67 + TSS region transcription start site region 45893
Tssr45894 5 34573876 to 34573881 5 + TSS region transcription start site region 45894
Mir7036b 5 34574151 to 34574213 62 + miRNA gene microRNA 7036b
Gm42867 5 34575088 to 34575556 468 + unclassified gene predicted gene 42867
Tssr45895 5 34584980 to 34584984 4 + TSS region transcription start site region 45895
Mfsd10 5 34633644 to 34637209 3565 - protein coding gene major facilitator superfamily domain containing 10
Tssr50667 5 34634706 to 34634729 23 - TSS region transcription start site region 50667
Tssr50668 5 34634857 to 34634884 27 - TSS region transcription start site region 50668
Tssr50669 5 34634885 to 34634933 48 - TSS region transcription start site region 50669
Tssr50670 5 34634953 to 34634958 5 - TSS region transcription start site region 50670
Tssr50671 5 34635011 to 34635023 12 - TSS region transcription start site region 50671
Cpgi15757 5 34636390 to 34637274 884 CpG island CpG island 15757
Tssr50672 5 34636489 to 34636540 51 - TSS region transcription start site region 50672
Tssr50673 5 34636990 to 34637008 18 - TSS region transcription start site region 50673
Tssr50674 5 34637067 to 34637081 14 - TSS region transcription start site region 50674
Tssr50675 5 34637107 to 34637200 93 - TSS region transcription start site region 50675
Tssr50676 5 34637203 to 34637216 13 - TSS region transcription start site region 50676
Nop14 5 34638536 to 34660148 21612 - protein coding gene NOP14 nucleolar protein
Tssr50677 5 34650660 to 34650670 10 - TSS region transcription start site region 50677
Tssr45896 5 34650687 to 34650723 36 + TSS region transcription start site region 45896
Gm15522 5 34650718 to 34652477 1759 + antisense lncRNA gene predicted gene 15522
Tssr50678 5 34654007 to 34654018 11 - TSS region transcription start site region 50678
Tssr50679 5 34654462 to 34654511 49 - TSS region transcription start site region 50679
Cpgi15758 5 34659794 to 34661198 1404 CpG island CpG island 15758
Tssr50680 5 34660068 to 34660138 70 - TSS region transcription start site region 50680
Tssr45897 5 34660294 to 34660302 8 + TSS region transcription start site region 45897
Tssr45898 5 34660309 to 34660323 14 + TSS region transcription start site region 45898
Tssr45899 5 34660361 to 34660411 50 + TSS region transcription start site region 45899
Grk4 5 34660379 to 34755305 94926 + protein coding gene G protein-coupled receptor kinase 4
Tssr50681 5 34660564 to 34660595 31 - TSS region transcription start site region 50681
Gm42560 5 34679523 to 34706831 27308 - antisense lncRNA gene predicted gene 42560
Mir467g 5 34732853 to 34732972 119 - miRNA gene microRNA 467g
Cpgi15759 5 34761207 to 34762578 1371 CpG island CpG island 15759
Tssr45900 5 34761646 to 34761660 14 + TSS region transcription start site region 45900
Tssr45901 5 34761734 to 34761780 46 + TSS region transcription start site region 45901
Htt 5 34761740 to 34912534 150794 + protein coding gene huntingtin
Tssr45902 5 34761815 to 34761826 11 + TSS region transcription start site region 45902
D5Jcs84 5 34790162 to 34790306 144 DNA segment DNA segment, Chr 5, John C. Schimenti 84
D5Jcs83 5 34790170 to 34790324 154 DNA segment DNA segment, Chr 5, John C. Schimenti 83
Tssr45903 5 34801360 to 34801383 23 + TSS region transcription start site region 45903
Tssr45904 5 34821142 to 34821146 4 + TSS region transcription start site region 45904
Tssr45905 5 34827492 to 34827499 7 + TSS region transcription start site region 45905
Tssr45906 5 34865744 to 34865766 22 + TSS region transcription start site region 45906
Tssr45907 5 34898692 to 34898698 6 + TSS region transcription start site region 45907
Msantd1 5 34913571 to 34926991 13420 + protein coding gene Myb/SANT-like DNA-binding domain containing 1
Tssr45908 5 34917518 to 34917545 27 + TSS region transcription start site region 45908
D5Jcs85 5 34922747 to 34922904 157 DNA segment DNA segment, Chr 5, John C. Schimenti 85
D5Jcs86 5 34932867 to 34933030 163 DNA segment DNA segment, Chr 5, John C. Schimenti 86
Tssr50682 5 34942070 to 34942073 3 - TSS region transcription start site region 50682
Cpgi15760 5 34948748 to 34950198 1450 CpG island CpG island 15760
Tssr45909 5 34949364 to 34949369 5 + TSS region transcription start site region 45909
Tssr45910 5 34949435 to 34949504 69 + TSS region transcription start site region 45910
Rgs12 5 34949445 to 35039644 90199 + protein coding gene regulator of G-protein signaling 12
Tssr45911 5 34974814 to 34974825 11 + TSS region transcription start site region 45911
Tssr45912 5 34974981 to 34974999 18 + TSS region transcription start site region 45912
Tssr45913 5 34975132 to 34975173 41 + TSS region transcription start site region 45913
Tssr45914 5 34975244 to 34975256 12 + TSS region transcription start site region 45914