Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:34048683-34528694

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Poln 5 34007179 to 34169448 162269 - protein coding gene DNA polymerase N
Gm19798 5 34060761 to 34061217 456 - pseudogene predicted gene, 19798
Gm43459 5 34096704 to 34097034 330 + pseudogene predicted gene 43459
Tssr50627 5 34105781 to 34105803 22 - TSS region transcription start site region 50627
Tssr50628 5 34105804 to 34105820 16 - TSS region transcription start site region 50628
4930557J02Rik 5 34118740 to 34135339 16599 + antisense lncRNA gene RIKEN cDNA 4930557J02 gene
D5Jcs46 5 34134165 to 34134314 149 DNA segment DNA segment, Chr 5, John C. Schimenti 46
Haus3 5 34153896 to 34169424 15528 - protein coding gene HAUS augmin-like complex, subunit 3
Tssr50629 5 34157257 to 34157261 4 - TSS region transcription start site region 50629
Gm25918 5 34162324 to 34162426 102 + snRNA gene predicted gene, 25918
Tssr50630 5 34165029 to 34165034 5 - TSS region transcription start site region 50630
Tssr50631 5 34169024 to 34169035 11 - TSS region transcription start site region 50631
Cpgi15747 5 34169141 to 34169918 777 CpG island CpG island 15747
Tssr50632 5 34169409 to 34169466 57 - TSS region transcription start site region 50632
Tssr50633 5 34169523 to 34169534 11 - TSS region transcription start site region 50633
Tssr45858 5 34169732 to 34169764 32 + TSS region transcription start site region 45858
Tssr50634 5 34171714 to 34171718 4 - TSS region transcription start site region 50634
Gm42846 5 34173887 to 34174887 1000 + antisense lncRNA gene predicted gene 42846
Mxd4 5 34176580 to 34187710 11130 - protein coding gene Max dimerization protein 4
Cpgi15748 5 34186539 to 34188399 1860 CpG island CpG island 15748
Tssr50635 5 34187052 to 34187065 13 - TSS region transcription start site region 50635
Tssr50636 5 34187074 to 34187083 9 - TSS region transcription start site region 50636
Tssr50637 5 34187085 to 34187105 20 - TSS region transcription start site region 50637
Tssr50638 5 34187628 to 34187643 15 - TSS region transcription start site region 50638
Tssr50639 5 34187644 to 34187669 25 - TSS region transcription start site region 50639
Tssr50640 5 34187670 to 34187749 79 - TSS region transcription start site region 50640
Tssr50641 5 34187870 to 34187896 26 - TSS region transcription start site region 50641
Tssr45859 5 34188057 to 34188119 62 + TSS region transcription start site region 45859
Zfyve28 5 34194893 to 34288449 93556 - protein coding gene zinc finger, FYVE domain containing 28
Tssr50642 5 34196462 to 34196476 14 - TSS region transcription start site region 50642
Tssr50643 5 34196596 to 34196637 41 - TSS region transcription start site region 50643
Tssr45860 5 34196790 to 34196793 3 + TSS region transcription start site region 45860
Tssr45861 5 34196803 to 34196817 14 + TSS region transcription start site region 45861
Gm15513 5 34211810 to 34213802 1992 - sense intronic lncRNA gene predicted gene 15513
Tssr50644 5 34215146 to 34215150 4 - TSS region transcription start site region 50644
Tssr50645 5 34220160 to 34220162 2 - TSS region transcription start site region 50645
Gm42848 5 34221162 to 34225984 4822 + antisense lncRNA gene predicted gene 42848
Tssr50646 5 34232560 to 34232587 27 - TSS region transcription start site region 50646
Tssr50647 5 34233013 to 34233035 22 - TSS region transcription start site region 50647
D5Jcs47 5 34237302 to 34237443 141 DNA segment DNA segment, Chr 5, John C. Schimenti 47
Tssr50648 5 34242464 to 34242491 27 - TSS region transcription start site region 50648
Tssr45862 5 34242835 to 34242847 12 + TSS region transcription start site region 45862
Tssr50649 5 34243350 to 34243364 14 - TSS region transcription start site region 50649
Tssr50650 5 34243404 to 34243418 14 - TSS region transcription start site region 50650
Tssr50651 5 34243465 to 34243528 63 - TSS region transcription start site region 50651
Tssr50652 5 34243531 to 34243553 22 - TSS region transcription start site region 50652
Tssr45863 5 34278808 to 34278815 7 + TSS region transcription start site region 45863
Cpgi15749 5 34286971 to 34289134 2163 CpG island CpG island 15749
Tssr50653 5 34288286 to 34288305 19 - TSS region transcription start site region 50653
Tssr50654 5 34288318 to 34288372 54 - TSS region transcription start site region 50654
Tssr50655 5 34288375 to 34288399 24 - TSS region transcription start site region 50655
Tssr50656 5 34288407 to 34288469 62 - TSS region transcription start site region 50656
Cfap99 5 34288600 to 34327327 38727 + protein coding gene cilia and flagella associated protein 99
Tssr45864 5 34288644 to 34288670 26 + TSS region transcription start site region 45864
Tssr45865 5 34288683 to 34288694 11 + TSS region transcription start site region 45865
Gm5553 5 34306343 to 34307866 1523 - pseudogene predicted gene 5553
Gm43105 5 34306718 to 34307176 458 - pseudogene predicted gene 43105
Gm43458 5 34309212 to 34327530 18318 - lincRNA gene predicted gene 43458
D5Jcs36 5 34324378 to 34324525 147 DNA segment DNA segment, Chr 5, John C. Schimenti 36
Cpgi15750 5 34326880 to 34327381 501 CpG island CpG island 15750
A830049F12Rik 5 34335123 to 34337181 2058 unclassified non-coding RNA gene RIKEN cDNA A830049F12 gene
Cpgi15751 5 34335723 to 34337253 1530 CpG island CpG island 15751
Tssr50657 5 34336134 to 34336161 27 - TSS region transcription start site region 50657
Tssr50658 5 34336170 to 34336224 54 - TSS region transcription start site region 50658
Rnf4 5 34336250 to 34353445 17195 + protein coding gene ring finger protein 4
Tssr45866 5 34336384 to 34336395 11 + TSS region transcription start site region 45866
Tssr45867 5 34336401 to 34336459 58 + TSS region transcription start site region 45867
Tssr50659 5 34336818 to 34336832 14 - TSS region transcription start site region 50659
Tssr50660 5 34336872 to 34336892 20 - TSS region transcription start site region 50660
Tssr45868 5 34336928 to 34336937 9 + TSS region transcription start site region 45868
Tssr45869 5 34336952 to 34336959 7 + TSS region transcription start site region 45869
Tssr45870 5 34336964 to 34337016 52 + TSS region transcription start site region 45870
Tssr45871 5 34352083 to 34352112 29 + TSS region transcription start site region 45871
Tssr45872 5 34363379 to 34363380 1 + TSS region transcription start site region 45872
Cpgi15752 5 34369338 to 34370837 1499 CpG island CpG island 15752
Tssr45873 5 34369894 to 34369905 11 + TSS region transcription start site region 45873
Tssr45874 5 34369909 to 34369970 61 + TSS region transcription start site region 45874
Fam193a 5 34369933 to 34486456 116523 + protein coding gene family with sequence homology 193, member A
Tssr45875 5 34462176 to 34462179 3 + TSS region transcription start site region 45875
Tssr45876 5 34462184 to 34462195 11 + TSS region transcription start site region 45876
Gm42559 5 34469664 to 34473195 3531 + unclassified gene predicted gene 42559
Gm26931 5 34481914 to 34482522 608 - pseudogene predicted gene, 26931
Gm43457 5 34487314 to 34489722 2408 + unclassified gene predicted gene 43457
Tssr50661 5 34495290 to 34495335 45 - TSS region transcription start site region 50661
Tnip2 5 34496096 to 34513979 17883 - protein coding gene TNFAIP3 interacting protein 2
Tssr50662 5 34500832 to 34500835 3 - TSS region transcription start site region 50662
Tssr50663 5 34504460 to 34504464 4 - TSS region transcription start site region 50663
D5Jcs81 5 34508661 to 34508821 160 DNA segment DNA segment, Chr 5, John C. Schimenti 81
Cpgi15753 5 34513271 to 34514163 892 CpG island CpG island 15753
Tssr50664 5 34513703 to 34513714 11 - TSS region transcription start site region 50664
Tssr50665 5 34513892 to 34513984 92 - TSS region transcription start site region 50665
Cpgi15754 5 34525701 to 34526191 490 CpG island CpG island 15754
Tssr45877 5 34525777 to 34525788 11 + TSS region transcription start site region 45877
Tssr45878 5 34525797 to 34525869 72 + TSS region transcription start site region 45878
Sh3bp2 5 34525838 to 34563641 37803 + protein coding gene SH3-domain binding protein 2
Tssr50666 5 34526160 to 34526165 5 - TSS region transcription start site region 50666