Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:33666094-33976116

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tacc3 5 33658128 to 33672203 14075 + protein coding gene transforming, acidic coiled-coil containing protein 3
Gm42965 5 33682725 to 33682974 249 - pseudogene predicted gene 42965
Cpgi15740 5 33694850 to 33696100 1250 CpG island CpG island 15740
G630022F23Rik 5 33720043 to 33723669 3626 - unclassified gene RIKEN cDNA G630022F23 gene
Tssr45829 5 33720822 to 33720832 10 + TSS region transcription start site region 45829
Cpgi15741 5 33721440 to 33724204 2764 CpG island CpG island 15741
Fgfr3 5 33721724 to 33737068 15344 + protein coding gene fibroblast growth factor receptor 3
Tssr45830 5 33721769 to 33721800 31 + TSS region transcription start site region 45830
Del(5Letm1-Htt)1Jcs 5 33739675 to 34912534 1172859 chromosomal deletion deletion, Chr 5, John C Schimenti
Del(5Letm1-D5Mit81)3Jcs 5 33739675 to 50331534 16591859 chromosomal deletion deletion, Chr 5, John C. Schimenti 3
Letm1 5 33739675 to 33782704 43029 - protein coding gene leucine zipper-EF-hand containing transmembrane protein 1
Tssr50618 5 33747493 to 33747498 5 - TSS region transcription start site region 50618
Tssr45831 5 33759333 to 33759336 3 + TSS region transcription start site region 45831
Gm10059 5 33759366 to 33759536 170 + pseudogene predicted pseudogene 10059
Gm30708 5 33774912 to 33775223 311 + pseudogene predicted gene, 30708
Cpgi15742 5 33782109 to 33783204 1095 CpG island CpG island 15742
Tssr50619 5 33782709 to 33782749 40 - TSS region transcription start site region 50619
Tssr50620 5 33782810 to 33782826 16 - TSS region transcription start site region 50620
Tssr45832 5 33799579 to 33799585 6 + TSS region transcription start site region 45832
Cpgi15743 5 33819254 to 33821731 2477 CpG island CpG island 15743
Tssr45833 5 33820374 to 33820441 67 + TSS region transcription start site region 45833
Tssr45834 5 33820483 to 33820509 26 + TSS region transcription start site region 45834
Tssr45835 5 33820695 to 33820835 140 + TSS region transcription start site region 45835
Nsd2 5 33820730 to 33897966 77236 + protein coding gene nuclear receptor binding SET domain protein 2
Tssr45836 5 33821094 to 33821116 22 + TSS region transcription start site region 45836
Tssr45837 5 33828249 to 33828253 4 + TSS region transcription start site region 45837
Tssr45838 5 33854866 to 33854870 4 + TSS region transcription start site region 45838
Tssr45839 5 33859911 to 33859912 1 + TSS region transcription start site region 45839
D5Jcs45 5 33885057 to 33885208 151 DNA segment DNA segment, Chr 5, John C. Schimenti 45
Nelfa 5 33898179 to 33936258 38079 - protein coding gene negative elongation factor complex member A, Whsc2
Mir7024 5 33898910 to 33898971 61 - miRNA gene microRNA 7024
Tssr50621 5 33933232 to 33933233 1 - TSS region transcription start site region 50621
Cpgi15744 5 33935477 to 33936768 1291 CpG island CpG island 15744
Tssr50622 5 33936230 to 33936296 66 - TSS region transcription start site region 50622
Tssr50623 5 33936301 to 33936353 52 - TSS region transcription start site region 50623
Gm42849 5 33947026 to 33948832 1806 + lincRNA gene predicted gene 42849
Gm42851 5 33947580 to 33948990 1410 - lincRNA gene predicted gene 42851