Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:33340015-33740429

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Maea 5 33335572 to 33373294 37722 + protein coding gene macrophage erythroblast attacher
D5Jcs35 5 33353697 to 33353843 146 DNA segment DNA segment, Chr 5, John C. Schimenti 35
Tssr45818 5 33368693 to 33368718 25 + TSS region transcription start site region 45818
Tssr45819 5 33371684 to 33371721 37 + TSS region transcription start site region 45819
Cpgi15731 5 33377871 to 33379113 1242 CpG island CpG island 15731
Tssr45820 5 33378529 to 33378584 55 + TSS region transcription start site region 45820
Uvssa 5 33378549 to 33419754 41205 + protein coding gene UV stimulated scaffold protein A
Tssr45821 5 33378729 to 33378798 69 + TSS region transcription start site region 45821
Tssr45822 5 33417854 to 33417858 4 + TSS region transcription start site region 45822
Tssr45823 5 33427805 to 33427812 7 + TSS region transcription start site region 45823
Cpgi15732 5 33430168 to 33435562 5394 CpG island CpG island 15732
Nkx1-1 5 33430734 to 33433976 3242 - protein coding gene NK1 homeobox 1
Gm43851 5 33436625 to 33437464 839 - lincRNA gene predicted gene 43851
Cpgi15733 5 33438222 to 33438618 396 CpG island CpG island 15733
Cpgi15734 5 33442788 to 33443617 829 CpG island CpG island 15734
Tssr50603 5 33493404 to 33493408 4 - TSS region transcription start site region 50603
Tssr50604 5 33518970 to 33518981 11 - TSS region transcription start site region 50604
Tssr50605 5 33524171 to 33524182 11 - TSS region transcription start site region 50605
Cpgi15735 5 33534967 to 33535282 315 CpG island CpG island 15735
Tssr50606 5 33535455 to 33535487 32 - TSS region transcription start site region 50606
Tssr50607 5 33535623 to 33535630 7 - TSS region transcription start site region 50607
Cpgi15736 5 33540015 to 33540429 414 CpG island CpG island 15736
D5Jcs44 5 33566509 to 33566672 163 DNA segment DNA segment, Chr 5, John C. Schimenti 44
Fam53a 5 33600347 to 33629635 29288 - protein coding gene family with sequence similarity 53, member A
Cpgi15737 5 33628830 to 33630375 1545 CpG island CpG island 15737
Tssr50608 5 33629535 to 33629544 9 - TSS region transcription start site region 50608
Tssr50609 5 33629577 to 33629649 72 - TSS region transcription start site region 50609
Tssr45824 5 33629915 to 33629930 15 + TSS region transcription start site region 45824
Gm9903 5 33629925 to 33632092 2167 + protein coding gene predicted gene 9903
Tssr45825 5 33629949 to 33629964 15 + TSS region transcription start site region 45825
Gm40279 5 33632267 to 33633043 776 + lncRNA gene predicted gene, 40279
Slbp 5 33640055 to 33652574 12519 - protein coding gene stem-loop binding protein
Tssr50610 5 33649314 to 33649321 7 - TSS region transcription start site region 50610
Cpgi15738 5 33651831 to 33653038 1207 CpG island CpG island 15738
Gm10459 5 33652101 to 33653255 1154 + unclassified gene predicted gene 10459
Tssr50611 5 33652312 to 33652327 15 - TSS region transcription start site region 50611
Tssr50612 5 33652339 to 33652356 17 - TSS region transcription start site region 50612
Tssr50613 5 33652528 to 33652587 59 - TSS region transcription start site region 50613
Tmem129 5 33653216 to 33657911 4695 - protein coding gene transmembrane protein 129
Tssr50614 5 33655166 to 33655181 15 - TSS region transcription start site region 50614
Cpgi15739 5 33657277 to 33659119 1842 CpG island CpG island 15739
Tssr50615 5 33657637 to 33657666 29 - TSS region transcription start site region 50615
Tssr50616 5 33657837 to 33657887 50 - TSS region transcription start site region 50616
Tssr50617 5 33657889 to 33657940 51 - TSS region transcription start site region 50617
Tssr45826 5 33658123 to 33658160 37 + TSS region transcription start site region 45826
Tacc3 5 33658128 to 33672203 14075 + protein coding gene transforming, acidic coiled-coil containing protein 3
Tssr45827 5 33658550 to 33658563 13 + TSS region transcription start site region 45827
Tssr45828 5 33658567 to 33658616 49 + TSS region transcription start site region 45828
Gm42965 5 33682725 to 33682974 249 - pseudogene predicted gene 42965
Cpgi15740 5 33694850 to 33696100 1250 CpG island CpG island 15740
G630022F23Rik 5 33720043 to 33723669 3626 - unclassified gene RIKEN cDNA G630022F23 gene
Tssr45829 5 33720822 to 33720832 10 + TSS region transcription start site region 45829
Cpgi15741 5 33721440 to 33724204 2764 CpG island CpG island 15741
Fgfr3 5 33721724 to 33737068 15344 + protein coding gene fibroblast growth factor receptor 3
Tssr45830 5 33721769 to 33721800 31 + TSS region transcription start site region 45830
Letm1 5 33739675 to 33782704 43029 - protein coding gene leucine zipper-EF-hand containing transmembrane protein 1
Del(5Letm1-D5Mit81)3Jcs 5 33739675 to 50331534 16591859 chromosomal deletion deletion, Chr 5, John C. Schimenti 3
Del(5Letm1-Htt)1Jcs 5 33739675 to 34912534 1172859 chromosomal deletion deletion, Chr 5, John C Schimenti