Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:33167277-34149119

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D5Mit419 5 33212244 to 33212367 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 419
Spon2 5 33213518 to 33218254 4736 - protein coding gene spondin 2, extracellular matrix protein
Tssr50597 5 33218160 to 33218222 62 - TSS region transcription start site region 50597
Tssr50598 5 33218229 to 33218243 14 - TSS region transcription start site region 50598
Ctbp1 5 33247723 to 33274994 27271 - protein coding gene C-terminal binding protein 1
Gm43850 5 33255318 to 33256362 1044 + pseudogene predicted gene 43850
Tssr50599 5 33270641 to 33270660 19 - TSS region transcription start site region 50599
Cpgi15729 5 33273894 to 33275509 1615 CpG island CpG island 15729
Tssr50600 5 33274954 to 33274965 11 - TSS region transcription start site region 50600
Tssr50601 5 33274966 to 33275010 44 - TSS region transcription start site region 50601
Tssr45813 5 33288059 to 33288063 4 + TSS region transcription start site region 45813
Gm20465 5 33293612 to 33297473 3861 - lincRNA gene predicted gene 20465
D5Mit388 5 33318099 to 33318293 194 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 388
Del(5D5Mit388-D5Mit351)4Jcs 5 33318099 to 37019120 3701021 chromosomal deletion deletion, Chr 5, John C. Schimenti 4
Mom5 5 33318293 to 8797672 -24520621 QTL modifier of Min 5
Cpgi15730 5 33335087 to 33336318 1231 CpG island CpG island 15730
Tssr45814 5 33335540 to 33335571 31 + TSS region transcription start site region 45814
Maea 5 33335572 to 33373294 37722 + protein coding gene macrophage erythroblast attacher
Tssr50602 5 33335796 to 33335804 8 - TSS region transcription start site region 50602
Tssr45815 5 33336227 to 33336254 27 + TSS region transcription start site region 45815
Tssr45816 5 33336270 to 33336281 11 + TSS region transcription start site region 45816
Tssr45817 5 33337056 to 33337060 4 + TSS region transcription start site region 45817
D5Jcs35 5 33353697 to 33353843 146 DNA segment DNA segment, Chr 5, John C. Schimenti 35
Tssr45818 5 33368693 to 33368718 25 + TSS region transcription start site region 45818
Tssr45819 5 33371684 to 33371721 37 + TSS region transcription start site region 45819
Cpgi15731 5 33377871 to 33379113 1242 CpG island CpG island 15731
Tssr45820 5 33378529 to 33378584 55 + TSS region transcription start site region 45820
Uvssa 5 33378549 to 33419754 41205 + protein coding gene UV stimulated scaffold protein A
Tssr45821 5 33378729 to 33378798 69 + TSS region transcription start site region 45821
Tssr45822 5 33417854 to 33417858 4 + TSS region transcription start site region 45822
Tssr45823 5 33427805 to 33427812 7 + TSS region transcription start site region 45823
Cpgi15732 5 33430168 to 33435562 5394 CpG island CpG island 15732
Nkx1-1 5 33430734 to 33433976 3242 - protein coding gene NK1 homeobox 1
Gm43851 5 33436625 to 33437464 839 - lincRNA gene predicted gene 43851
Cpgi15733 5 33438222 to 33438618 396 CpG island CpG island 15733
Cpgi15734 5 33442788 to 33443617 829 CpG island CpG island 15734
Tssr50603 5 33493404 to 33493408 4 - TSS region transcription start site region 50603
Tssr50604 5 33518970 to 33518981 11 - TSS region transcription start site region 50604
Tssr50605 5 33524171 to 33524182 11 - TSS region transcription start site region 50605
Cpgi15735 5 33534967 to 33535282 315 CpG island CpG island 15735
Tssr50606 5 33535455 to 33535487 32 - TSS region transcription start site region 50606
Tssr50607 5 33535623 to 33535630 7 - TSS region transcription start site region 50607
Cpgi15736 5 33540015 to 33540429 414 CpG island CpG island 15736
D5Jcs44 5 33566509 to 33566672 163 DNA segment DNA segment, Chr 5, John C. Schimenti 44
Fam53a 5 33600347 to 33629635 29288 - protein coding gene family with sequence similarity 53, member A
Cpgi15737 5 33628830 to 33630375 1545 CpG island CpG island 15737
Tssr50608 5 33629535 to 33629544 9 - TSS region transcription start site region 50608
Tssr50609 5 33629577 to 33629649 72 - TSS region transcription start site region 50609
Tssr45824 5 33629915 to 33629930 15 + TSS region transcription start site region 45824
Gm9903 5 33629925 to 33632092 2167 + protein coding gene predicted gene 9903
Tssr45825 5 33629949 to 33629964 15 + TSS region transcription start site region 45825
Gm40279 5 33632267 to 33633043 776 + lncRNA gene predicted gene, 40279
Slbp 5 33640055 to 33652574 12519 - protein coding gene stem-loop binding protein
Tssr50610 5 33649314 to 33649321 7 - TSS region transcription start site region 50610
Cpgi15738 5 33651831 to 33653038 1207 CpG island CpG island 15738
Gm10459 5 33652101 to 33653255 1154 + unclassified gene predicted gene 10459
Tssr50611 5 33652312 to 33652327 15 - TSS region transcription start site region 50611
Tssr50612 5 33652339 to 33652356 17 - TSS region transcription start site region 50612
Tssr50613 5 33652528 to 33652587 59 - TSS region transcription start site region 50613
Tmem129 5 33653216 to 33657911 4695 - protein coding gene transmembrane protein 129
Tssr50614 5 33655166 to 33655181 15 - TSS region transcription start site region 50614
Cpgi15739 5 33657277 to 33659119 1842 CpG island CpG island 15739
Tssr50615 5 33657637 to 33657666 29 - TSS region transcription start site region 50615
Tssr50616 5 33657837 to 33657887 50 - TSS region transcription start site region 50616
Tssr50617 5 33657889 to 33657940 51 - TSS region transcription start site region 50617
Tssr45826 5 33658123 to 33658160 37 + TSS region transcription start site region 45826
Tacc3 5 33658128 to 33672203 14075 + protein coding gene transforming, acidic coiled-coil containing protein 3
Tssr45827 5 33658550 to 33658563 13 + TSS region transcription start site region 45827
Tssr45828 5 33658567 to 33658616 49 + TSS region transcription start site region 45828
Gm42965 5 33682725 to 33682974 249 - pseudogene predicted gene 42965
Cpgi15740 5 33694850 to 33696100 1250 CpG island CpG island 15740
G630022F23Rik 5 33720043 to 33723669 3626 - unclassified gene RIKEN cDNA G630022F23 gene
Tssr45829 5 33720822 to 33720832 10 + TSS region transcription start site region 45829
Cpgi15741 5 33721440 to 33724204 2764 CpG island CpG island 15741
Fgfr3 5 33721724 to 33737068 15344 + protein coding gene fibroblast growth factor receptor 3
Tssr45830 5 33721769 to 33721800 31 + TSS region transcription start site region 45830
Letm1 5 33739675 to 33782704 43029 - protein coding gene leucine zipper-EF-hand containing transmembrane protein 1
Del(5Letm1-D5Mit81)3Jcs 5 33739675 to 50331534 16591859 chromosomal deletion deletion, Chr 5, John C. Schimenti 3
Del(5Letm1-Htt)1Jcs 5 33739675 to 34912534 1172859 chromosomal deletion deletion, Chr 5, John C Schimenti
Tssr50618 5 33747493 to 33747498 5 - TSS region transcription start site region 50618
Tssr45831 5 33759333 to 33759336 3 + TSS region transcription start site region 45831
Gm10059 5 33759366 to 33759536 170 + pseudogene predicted pseudogene 10059
Gm30708 5 33774912 to 33775223 311 + pseudogene predicted gene, 30708
Cpgi15742 5 33782109 to 33783204 1095 CpG island CpG island 15742
Tssr50619 5 33782709 to 33782749 40 - TSS region transcription start site region 50619
Tssr50620 5 33782810 to 33782826 16 - TSS region transcription start site region 50620
Tssr45832 5 33799579 to 33799585 6 + TSS region transcription start site region 45832
Cpgi15743 5 33819254 to 33821731 2477 CpG island CpG island 15743
Tssr45833 5 33820374 to 33820441 67 + TSS region transcription start site region 45833
Tssr45834 5 33820483 to 33820509 26 + TSS region transcription start site region 45834
Tssr45835 5 33820695 to 33820835 140 + TSS region transcription start site region 45835
Nsd2 5 33820730 to 33897966 77236 + protein coding gene nuclear receptor binding SET domain protein 2
Tssr45836 5 33821094 to 33821116 22 + TSS region transcription start site region 45836
Tssr45837 5 33828249 to 33828253 4 + TSS region transcription start site region 45837
Tssr45838 5 33854866 to 33854870 4 + TSS region transcription start site region 45838
Tssr45839 5 33859911 to 33859912 1 + TSS region transcription start site region 45839
D5Jcs45 5 33885057 to 33885208 151 DNA segment DNA segment, Chr 5, John C. Schimenti 45
Nelfa 5 33898179 to 33936258 38079 - protein coding gene negative elongation factor complex member A, Whsc2
Mir7024 5 33898910 to 33898971 61 - miRNA gene microRNA 7024
Tssr50621 5 33933232 to 33933233 1 - TSS region transcription start site region 50621
Cpgi15744 5 33935477 to 33936768 1291 CpG island CpG island 15744
Tssr50622 5 33936230 to 33936296 66 - TSS region transcription start site region 50622
Tssr50623 5 33936301 to 33936353 52 - TSS region transcription start site region 50623
Gm42849 5 33947026 to 33948832 1806 + lincRNA gene predicted gene 42849
Gm42851 5 33947580 to 33948990 1410 - lincRNA gene predicted gene 42851
Tssr50624 5 33976438 to 33976442 4 - TSS region transcription start site region 50624
Gm30802 5 33982098 to 33983155 1057 - lncRNA gene predicted gene, 30802
Cpgi15745 5 33982731 to 33984398 1667 CpG island CpG island 15745
Tssr45840 5 33983090 to 33983100 10 + TSS region transcription start site region 45840
Gm1673 5 33983433 to 33985009 1576 + protein coding gene predicted gene 1673
Tssr45841 5 33983479 to 33983529 50 + TSS region transcription start site region 45841
Tssr45842 5 33983537 to 33983548 11 + TSS region transcription start site region 45842
Tssr45843 5 33983675 to 33983709 34 + TSS region transcription start site region 45843
Tssr45844 5 33983715 to 33983734 19 + TSS region transcription start site region 45844
Tssr45845 5 33983741 to 33983750 9 + TSS region transcription start site region 45845
Gm42847 5 33990510 to 33993062 2552 - unclassified gene predicted gene 42847
Cpgi15746 5 33995374 to 33998043 2669 CpG island CpG island 15746
Nat8l 5 33995984 to 34005916 9932 + protein coding gene N-acetyltransferase 8-like
Tssr45846 5 33996009 to 33996030 21 + TSS region transcription start site region 45846
Tssr45847 5 33996048 to 33996061 13 + TSS region transcription start site region 45847
Tssr45848 5 33996094 to 33996111 17 + TSS region transcription start site region 45848
Tssr45849 5 33996119 to 33996137 18 + TSS region transcription start site region 45849
Tssr45850 5 33996410 to 33996424 14 + TSS region transcription start site region 45850
Tssr50625 5 33996536 to 33996548 12 - TSS region transcription start site region 50625
Tssr45851 5 33996585 to 33996594 9 + TSS region transcription start site region 45851
Tssr45852 5 33996609 to 33996632 23 + TSS region transcription start site region 45852
Tssr45853 5 33996639 to 33996690 51 + TSS region transcription start site region 45853
Tssr45854 5 33996698 to 33996729 31 + TSS region transcription start site region 45854
Tssr45855 5 33996731 to 33996745 14 + TSS region transcription start site region 45855
Tssr45856 5 33996748 to 33996763 15 + TSS region transcription start site region 45856
Tssr45857 5 33996770 to 33996781 11 + TSS region transcription start site region 45857
Tssr1458 5 33996783 to 33996790 7 + TSS region transcription start site region 1458
Tssr50626 5 33997581 to 33997589 8 - TSS region transcription start site region 50626
Tssr1459 5 34000923 to 34000945 22 + TSS region transcription start site region 1459
Tssr1460 5 34001137 to 34001167 30 + TSS region transcription start site region 1460
Poln 5 34007179 to 34169448 162269 - protein coding gene DNA polymerase N
Gm19798 5 34060761 to 34061217 456 - pseudogene predicted gene, 19798
Gm43459 5 34096704 to 34097034 330 + pseudogene predicted gene 43459
Tssr50627 5 34105781 to 34105803 22 - TSS region transcription start site region 50627
Tssr50628 5 34105804 to 34105820 16 - TSS region transcription start site region 50628
4930557J02Rik 5 34118740 to 34135339 16599 + antisense lncRNA gene RIKEN cDNA 4930557J02 gene
D5Jcs46 5 34134165 to 34134314 149 DNA segment DNA segment, Chr 5, John C. Schimenti 46