Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:32935318-33576362

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Depdc5 5 32863701 to 32994236 130535 + protein coding gene DEP domain containing 5
D5Ertd477e 5 32946187 to 32946421 234 DNA segment DNA segment, Chr 5, ERATO Doi 477, expressed
Tssr45800 5 32979142 to 32979144 2 + TSS region transcription start site region 45800
Gm43693 5 32984570 to 32985818 1248 + unclassified gene predicted gene 43693
Tssr50596 5 32985614 to 32985650 36 - TSS region transcription start site region 50596
Cpgi15727 5 33018207 to 33019769 1562 CpG island CpG island 15727
Tssr1455 5 33018638 to 33018668 30 - TSS region transcription start site region 1455
Tssr45801 5 33018769 to 33018770 1 + TSS region transcription start site region 45801
Ywhah 5 33018816 to 33027966 9150 + protein coding gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
Tssr45802 5 33018834 to 33018865 31 + TSS region transcription start site region 45802
Tssr45803 5 33018867 to 33018885 18 + TSS region transcription start site region 45803
Tssr45804 5 33018887 to 33018903 16 + TSS region transcription start site region 45804
Tssr45805 5 33018946 to 33018965 19 + TSS region transcription start site region 45805
Tssr45806 5 33018990 to 33019015 25 + TSS region transcription start site region 45806
Tssr45807 5 33019048 to 33019054 6 + TSS region transcription start site region 45807
Gm29892 5 33031178 to 33040025 8847 + lncRNA gene predicted gene, 29892
Gm40278 5 33040443 to 33043330 2887 + lncRNA gene predicted gene, 40278
Gm43849 5 33049985 to 33050199 214 + pseudogene predicted gene 43849
Tssr1456 5 33061916 to 33061919 3 + TSS region transcription start site region 1456
Rpl35a-ps5 5 33076038 to 33076370 332 + pseudogene ribosomal protein L35A, pseudogene 5
Cpgi15728 5 33104182 to 33104683 501 CpG island CpG island 15728
Slc5a1 5 33104219 to 33162699 58480 + protein coding gene solute carrier family 5 (sodium/glucose cotransporter), member 1
Tssr45808 5 33104220 to 33104240 20 + TSS region transcription start site region 45808
Tssr45809 5 33104420 to 33104436 16 + TSS region transcription start site region 45809
Tssr1457 5 33105098 to 33105104 6 - TSS region transcription start site region 1457
Tssr45810 5 33112106 to 33112113 7 + TSS region transcription start site region 45810
Gm15936 5 33126802 to 33127261 459 + pseudogene predicted gene 15936
5033423K11Rik 5 33140949 to 33142422 1473 - pseudogene RIKEN cDNA 5033423K11 gene
Tssr45811 5 33148951 to 33148961 10 + TSS region transcription start site region 45811
Tssr45812 5 33162143 to 33162154 11 + TSS region transcription start site region 45812
D5Mit419 5 33212244 to 33212367 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 419
Spon2 5 33213518 to 33218254 4736 - protein coding gene spondin 2, extracellular matrix protein
Tssr50597 5 33218160 to 33218222 62 - TSS region transcription start site region 50597
Tssr50598 5 33218229 to 33218243 14 - TSS region transcription start site region 50598
Ctbp1 5 33247723 to 33274994 27271 - protein coding gene C-terminal binding protein 1
Gm43850 5 33255318 to 33256362 1044 + pseudogene predicted gene 43850
Tssr50599 5 33270641 to 33270660 19 - TSS region transcription start site region 50599
Cpgi15729 5 33273894 to 33275509 1615 CpG island CpG island 15729
Tssr50600 5 33274954 to 33274965 11 - TSS region transcription start site region 50600
Tssr50601 5 33274966 to 33275010 44 - TSS region transcription start site region 50601
Tssr45813 5 33288059 to 33288063 4 + TSS region transcription start site region 45813
Gm20465 5 33293612 to 33297473 3861 - lincRNA gene predicted gene 20465
D5Mit388 5 33318099 to 33318293 194 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 388
Del(5D5Mit388-D5Mit351)4Jcs 5 33318099 to 37019120 3701021 chromosomal deletion deletion, Chr 5, John C. Schimenti 4
Mom5 5 33318293 to 8797672 -24520621 QTL modifier of Min 5
Cpgi15730 5 33335087 to 33336318 1231 CpG island CpG island 15730
Tssr45814 5 33335540 to 33335571 31 + TSS region transcription start site region 45814
Maea 5 33335572 to 33373294 37722 + protein coding gene macrophage erythroblast attacher
Tssr50602 5 33335796 to 33335804 8 - TSS region transcription start site region 50602
Tssr45815 5 33336227 to 33336254 27 + TSS region transcription start site region 45815
Tssr45816 5 33336270 to 33336281 11 + TSS region transcription start site region 45816
Tssr45817 5 33337056 to 33337060 4 + TSS region transcription start site region 45817
D5Jcs35 5 33353697 to 33353843 146 DNA segment DNA segment, Chr 5, John C. Schimenti 35
Tssr45818 5 33368693 to 33368718 25 + TSS region transcription start site region 45818
Tssr45819 5 33371684 to 33371721 37 + TSS region transcription start site region 45819
Cpgi15731 5 33377871 to 33379113 1242 CpG island CpG island 15731
Tssr45820 5 33378529 to 33378584 55 + TSS region transcription start site region 45820
Uvssa 5 33378549 to 33419754 41205 + protein coding gene UV stimulated scaffold protein A
Tssr45821 5 33378729 to 33378798 69 + TSS region transcription start site region 45821
Tssr45822 5 33417854 to 33417858 4 + TSS region transcription start site region 45822
Tssr45823 5 33427805 to 33427812 7 + TSS region transcription start site region 45823
Cpgi15732 5 33430168 to 33435562 5394 CpG island CpG island 15732
Nkx1-1 5 33430734 to 33433976 3242 - protein coding gene NK1 homeobox 1
Gm43851 5 33436625 to 33437464 839 - lincRNA gene predicted gene 43851
Cpgi15733 5 33438222 to 33438618 396 CpG island CpG island 15733
Cpgi15734 5 33442788 to 33443617 829 CpG island CpG island 15734
Tssr50603 5 33493404 to 33493408 4 - TSS region transcription start site region 50603
Tssr50604 5 33518970 to 33518981 11 - TSS region transcription start site region 50604
Tssr50605 5 33524171 to 33524182 11 - TSS region transcription start site region 50605
Cpgi15735 5 33534967 to 33535282 315 CpG island CpG island 15735
Tssr50606 5 33535455 to 33535487 32 - TSS region transcription start site region 50606
Tssr50607 5 33535623 to 33535630 7 - TSS region transcription start site region 50607
Cpgi15736 5 33540015 to 33540429 414 CpG island CpG island 15736
D5Jcs44 5 33566509 to 33566672 163 DNA segment DNA segment, Chr 5, John C. Schimenti 44