Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:31585314-32075531

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38424 5 31595752 to 31663432 67680 + lncRNA gene predicted gene, 38424
Cpgi15715 5 31596615 to 31597035 420 CpG island CpG island 15715
Tssr50557 5 31596717 to 31596738 21 - TSS region transcription start site region 50557
Tssr45719 5 31596865 to 31596939 74 + TSS region transcription start site region 45719
Gm43809 5 31596938 to 31701972 105034 + unclassified non-coding RNA gene predicted gene 43809
Tssr45720 5 31596976 to 31596994 18 + TSS region transcription start site region 45720
Tssr45721 5 31602610 to 31602655 45 + TSS region transcription start site region 45721
Cpgi15716 5 31613834 to 31614269 435 CpG island CpG island 15716
Tssr45722 5 31613941 to 31613944 3 + TSS region transcription start site region 45722
Tssr45723 5 31613949 to 31613979 30 + TSS region transcription start site region 45723
Mrpl33 5 31613951 to 31622644 8693 + protein coding gene mitochondrial ribosomal protein L33
Tssr45724 5 31613990 to 31614001 11 + TSS region transcription start site region 45724
Tssr45725 5 31614020 to 31614030 10 + TSS region transcription start site region 45725
Tssr1450 5 31614877 to 31614913 36 + TSS region transcription start site region 1450
Rbks 5 31624439 to 31697627 73188 - protein coding gene ribokinase
D5Mit229 5 31626498 to 31626643 145 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 229
Tssr50558 5 31647200 to 31647229 29 - TSS region transcription start site region 50558
Mir3473e 5 31667231 to 31667340 109 - miRNA gene microRNA 3473e
Cpgi15717 5 31697385 to 31698631 1246 CpG island CpG island 15717
Tssr50559 5 31697598 to 31697632 34 - TSS region transcription start site region 50559
Tssr45726 5 31697665 to 31697709 44 + TSS region transcription start site region 45726
Babam2 5 31697906 to 32084950 387044 + protein coding gene BRISC and BRCA1 A complex member 2
Tssr45727 5 31697960 to 31698042 82 + TSS region transcription start site region 45727
Tssr45728 5 31698050 to 31698067 17 + TSS region transcription start site region 45728
Tssr50560 5 31698245 to 31698256 11 - TSS region transcription start site region 50560
Tssr50561 5 31698331 to 31698341 10 - TSS region transcription start site region 50561
Tssr50562 5 31698371 to 31698386 15 - TSS region transcription start site region 50562
Tssr45729 5 31698731 to 31698752 21 + TSS region transcription start site region 45729
Tssr45730 5 31698775 to 31698802 27 + TSS region transcription start site region 45730
Tssr45731 5 31699167 to 31699212 45 + TSS region transcription start site region 45731
Tssr50563 5 31699385 to 31699420 35 - TSS region transcription start site region 50563
Gm43810 5 31708396 to 31708627 231 + unclassified gene predicted gene 43810
Tssr1451 5 31713252 to 31713286 34 - TSS region transcription start site region 1451
Tssr45732 5 31726119 to 31726169 50 + TSS region transcription start site region 45732
Tssr45733 5 31730481 to 31730494 13 + TSS region transcription start site region 45733
D5Mit66 5 31746145 to 31746358 213 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 66
Tssr45734 5 31746604 to 31746608 4 + TSS region transcription start site region 45734
Tssr50564 5 31766903 to 31766906 3 - TSS region transcription start site region 50564
Tssr45735 5 31814315 to 31814340 25 + TSS region transcription start site region 45735
Tssr45736 5 31821525 to 31821545 20 + TSS region transcription start site region 45736
D5Mit228 5 31830314 to 31830531 217 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 228
Tssr45737 5 31849473 to 31849477 4 + TSS region transcription start site region 45737
Gm24436 5 31870046 to 31870347 301 + unclassified non-coding RNA gene predicted gene, 24436
Tssr45738 5 31873079 to 31873084 5 + TSS region transcription start site region 45738
Tssr45739 5 31876660 to 31876697 37 + TSS region transcription start site region 45739
Tssr45740 5 31877690 to 31877695 5 + TSS region transcription start site region 45740
Tssr45741 5 31912289 to 31912297 8 + TSS region transcription start site region 45741
Tssr45742 5 31912342 to 31912356 14 + TSS region transcription start site region 45742
Gm43811 5 31926697 to 31927391 694 + unclassified gene predicted gene 43811
9530049O05Rik 5 31957066 to 31957946 880 unclassified gene RIKEN cDNA 9530049O05 gene
Tssr50565 5 31961570 to 31961585 15 - TSS region transcription start site region 50565
Tssr50566 5 31967981 to 31967991 10 - TSS region transcription start site region 50566
D5Mit148 5 31975890 to 31976038 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 148
Del(5D5Mit148-Qdpr)2Jcs 5 31975890 to 45450229 13474339 chromosomal deletion deletion, Chr 5, John C. Schimenti 2
Tssr50567 5 31998869 to 31998893 24 - TSS region transcription start site region 50567
Tssr45743 5 32001365 to 32001390 25 + TSS region transcription start site region 45743
Gm17130 5 32005977 to 32010863 4886 - antisense lncRNA gene predicted gene 17130
Tssr50568 5 32031048 to 32031059 11 - TSS region transcription start site region 50568
Tssr50569 5 32031063 to 32031074 11 - TSS region transcription start site region 50569
Tssr45744 5 32055247 to 32055251 4 + TSS region transcription start site region 45744
Lgq6 5 100630065 to 31975890 -68654175 QTL late growth QTL 6
W10q16 5 100630065 to 31975890 -68654175 QTL weight 10 weeks QTL 16