Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:31552408-32832442

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193 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc4a1ap 5 31526995 to 31556932 29937 + protein coding gene solute carrier family 4 (anion exchanger), member 1, adaptor protein
Gm43660 5 31560812 to 31569072 8260 - lincRNA gene predicted gene 43660
Tssr45716 5 31562713 to 31562722 9 + TSS region transcription start site region 45716
E130118H10Rik 5 31567222 to 31573092 5870 unclassified non-coding RNA gene RIKEN cDNA E130118H10 gene
Tssr45717 5 31569374 to 31569387 13 + TSS region transcription start site region 45717
AI839979 5 31569595 to 31571397 1802 - lincRNA gene expressed sequence AI839979
Tssr50553 5 31571349 to 31571358 9 - TSS region transcription start site region 50553
Tssr50554 5 31571405 to 31571429 24 - TSS region transcription start site region 50554
Tssr50555 5 31573437 to 31573444 7 - TSS region transcription start site region 50555
Tssr50556 5 31576614 to 31576631 17 - TSS region transcription start site region 50556
2900076G11Rik 5 31581079 to 31581709 630 + unclassified gene RIKEN cDNA 2900076G11 gene
Tssr45718 5 31582228 to 31582238 10 + TSS region transcription start site region 45718
Gm38424 5 31595752 to 31663432 67680 + lncRNA gene predicted gene, 38424
Cpgi15715 5 31596615 to 31597035 420 CpG island CpG island 15715
Tssr50557 5 31596717 to 31596738 21 - TSS region transcription start site region 50557
Tssr45719 5 31596865 to 31596939 74 + TSS region transcription start site region 45719
Gm43809 5 31596938 to 31701972 105034 + unclassified non-coding RNA gene predicted gene 43809
Tssr45720 5 31596976 to 31596994 18 + TSS region transcription start site region 45720
Tssr45721 5 31602610 to 31602655 45 + TSS region transcription start site region 45721
Cpgi15716 5 31613834 to 31614269 435 CpG island CpG island 15716
Tssr45722 5 31613941 to 31613944 3 + TSS region transcription start site region 45722
Tssr45723 5 31613949 to 31613979 30 + TSS region transcription start site region 45723
Mrpl33 5 31613951 to 31622644 8693 + protein coding gene mitochondrial ribosomal protein L33
Tssr45724 5 31613990 to 31614001 11 + TSS region transcription start site region 45724
Tssr45725 5 31614020 to 31614030 10 + TSS region transcription start site region 45725
Tssr1450 5 31614877 to 31614913 36 + TSS region transcription start site region 1450
Rbks 5 31624439 to 31697627 73188 - protein coding gene ribokinase
D5Mit229 5 31626498 to 31626643 145 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 229
Tssr50558 5 31647200 to 31647229 29 - TSS region transcription start site region 50558
Mir3473e 5 31667231 to 31667340 109 - miRNA gene microRNA 3473e
Cpgi15717 5 31697385 to 31698631 1246 CpG island CpG island 15717
Tssr50559 5 31697598 to 31697632 34 - TSS region transcription start site region 50559
Tssr45726 5 31697665 to 31697709 44 + TSS region transcription start site region 45726
Babam2 5 31697906 to 32084950 387044 + protein coding gene BRISC and BRCA1 A complex member 2
Tssr45727 5 31697960 to 31698042 82 + TSS region transcription start site region 45727
Tssr45728 5 31698050 to 31698067 17 + TSS region transcription start site region 45728
Tssr50560 5 31698245 to 31698256 11 - TSS region transcription start site region 50560
Tssr50561 5 31698331 to 31698341 10 - TSS region transcription start site region 50561
Tssr50562 5 31698371 to 31698386 15 - TSS region transcription start site region 50562
Tssr45729 5 31698731 to 31698752 21 + TSS region transcription start site region 45729
Tssr45730 5 31698775 to 31698802 27 + TSS region transcription start site region 45730
Tssr45731 5 31699167 to 31699212 45 + TSS region transcription start site region 45731
Tssr50563 5 31699385 to 31699420 35 - TSS region transcription start site region 50563
Gm43810 5 31708396 to 31708627 231 + unclassified gene predicted gene 43810
Tssr1451 5 31713252 to 31713286 34 - TSS region transcription start site region 1451
Tssr45732 5 31726119 to 31726169 50 + TSS region transcription start site region 45732
Tssr45733 5 31730481 to 31730494 13 + TSS region transcription start site region 45733
D5Mit66 5 31746145 to 31746358 213 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 66
Tssr45734 5 31746604 to 31746608 4 + TSS region transcription start site region 45734
Tssr50564 5 31766903 to 31766906 3 - TSS region transcription start site region 50564
Tssr45735 5 31814315 to 31814340 25 + TSS region transcription start site region 45735
Tssr45736 5 31821525 to 31821545 20 + TSS region transcription start site region 45736
D5Mit228 5 31830314 to 31830531 217 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 228
Tssr45737 5 31849473 to 31849477 4 + TSS region transcription start site region 45737
Gm24436 5 31870046 to 31870347 301 + unclassified non-coding RNA gene predicted gene, 24436
Tssr45738 5 31873079 to 31873084 5 + TSS region transcription start site region 45738
Tssr45739 5 31876660 to 31876697 37 + TSS region transcription start site region 45739
Tssr45740 5 31877690 to 31877695 5 + TSS region transcription start site region 45740
Tssr45741 5 31912289 to 31912297 8 + TSS region transcription start site region 45741
Tssr45742 5 31912342 to 31912356 14 + TSS region transcription start site region 45742
Gm43811 5 31926697 to 31927391 694 + unclassified gene predicted gene 43811
9530049O05Rik 5 31957066 to 31957946 880 unclassified gene RIKEN cDNA 9530049O05 gene
Tssr50565 5 31961570 to 31961585 15 - TSS region transcription start site region 50565
Tssr50566 5 31967981 to 31967991 10 - TSS region transcription start site region 50566
D5Mit148 5 31975890 to 31976038 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 148
Del(5D5Mit148-Qdpr)2Jcs 5 31975890 to 45450229 13474339 chromosomal deletion deletion, Chr 5, John C. Schimenti 2
Tssr50567 5 31998869 to 31998893 24 - TSS region transcription start site region 50567
Tssr45743 5 32001365 to 32001390 25 + TSS region transcription start site region 45743
Gm17130 5 32005977 to 32010863 4886 - antisense lncRNA gene predicted gene 17130
Tssr50568 5 32031048 to 32031059 11 - TSS region transcription start site region 50568
Tssr50569 5 32031063 to 32031074 11 - TSS region transcription start site region 50569
Tssr45744 5 32055247 to 32055251 4 + TSS region transcription start site region 45744
Gm40277 5 32090420 to 32099125 8705 + lncRNA gene predicted gene, 40277
Gm36665 5 32119822 to 32123393 3571 + lncRNA gene predicted gene, 36665
Tssr50570 5 32122476 to 32122487 11 - TSS region transcription start site region 50570
Tssr50571 5 32122513 to 32122522 9 - TSS region transcription start site region 50571
Tssr50572 5 32122526 to 32122531 5 - TSS region transcription start site region 50572
D5Dcr41 5 32129893 to 32129988 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 41
Gm10463 5 32130283 to 32133171 2888 - unclassified gene predicted gene 10463
Cpgi15718 5 32132906 to 32134028 1122 CpG island CpG island 15718
Tssr50573 5 32132950 to 32132965 15 - TSS region transcription start site region 50573
Tssr50574 5 32133012 to 32133022 10 - TSS region transcription start site region 50574
Tssr50575 5 32133045 to 32133053 8 - TSS region transcription start site region 50575
Tssr50576 5 32133116 to 32133136 20 - TSS region transcription start site region 50576
Tssr45745 5 32133234 to 32133257 23 + TSS region transcription start site region 45745
Tssr45746 5 32133539 to 32133564 25 + TSS region transcription start site region 45746
Tssr45747 5 32133690 to 32133708 18 + TSS region transcription start site region 45747
Tssr45748 5 32133805 to 32133817 12 + TSS region transcription start site region 45748
Tssr45749 5 32133825 to 32133838 13 + TSS region transcription start site region 45749
Tssr50577 5 32134866 to 32134884 18 - TSS region transcription start site region 50577
Cpgi15719 5 32134964 to 32137165 2201 CpG island CpG island 15719
Tssr50578 5 32135197 to 32135220 23 - TSS region transcription start site region 50578
Tssr50579 5 32135624 to 32135642 18 - TSS region transcription start site region 50579
Tssr45750 5 32135839 to 32135857 18 + TSS region transcription start site region 45750
Tssr45751 5 32136022 to 32136033 11 + TSS region transcription start site region 45751
Tssr45752 5 32136458 to 32136505 47 + TSS region transcription start site region 45752
Fosl2 5 32136472 to 32157840 21368 + protein coding gene fos-like antigen 2
Tssr45753 5 32136521 to 32136535 14 + TSS region transcription start site region 45753
Tssr45754 5 32136588 to 32136599 11 + TSS region transcription start site region 45754
Tssr45755 5 32136626 to 32136631 5 + TSS region transcription start site region 45755
Tssr45756 5 32136717 to 32136781 64 + TSS region transcription start site region 45756
Tssr45757 5 32136975 to 32136977 2 + TSS region transcription start site region 45757
Tssr45758 5 32137040 to 32137045 5 + TSS region transcription start site region 45758
Tssr45759 5 32138725 to 32138736 11 + TSS region transcription start site region 45759
Tssr1452 5 32138892 to 32138897 5 - TSS region transcription start site region 1452
Tssr45760 5 32139061 to 32139064 3 + TSS region transcription start site region 45760
Tssr50580 5 32146864 to 32146902 38 - TSS region transcription start site region 50580
Tssr50581 5 32146909 to 32146937 28 - TSS region transcription start site region 50581
Tssr45761 5 32150087 to 32150126 39 + TSS region transcription start site region 45761
Tssr45762 5 32152975 to 32152986 11 + TSS region transcription start site region 45762
Tssr45763 5 32156436 to 32156447 11 + TSS region transcription start site region 45763
Tssr45764 5 32156702 to 32156713 11 + TSS region transcription start site region 45764
Gm26335 5 32175099 to 32175205 106 + snRNA gene predicted gene, 26335
Gm36732 5 32182196 to 32185022 2826 - lncRNA gene predicted gene, 36732
Tssr50582 5 32184995 to 32185036 41 - TSS region transcription start site region 50582
Gm9555 5 32185497 to 32186079 582 + pseudogene predicted gene 9555
Tssr45765 5 32192408 to 32192442 34 + TSS region transcription start site region 45765
Tssr50583 5 32195958 to 32195961 3 - TSS region transcription start site region 50583
Gm36783 5 32225700 to 32232583 6883 - lncRNA gene predicted gene, 36783
Tssr45766 5 32232680 to 32232729 49 + TSS region transcription start site region 45766
Plb1 5 32232691 to 32364356 131665 + protein coding gene phospholipase B1
Tssr45767 5 32241169 to 32241184 15 + TSS region transcription start site region 45767
Tssr45768 5 32247449 to 32247468 19 + TSS region transcription start site region 45768
Tssr45769 5 32297628 to 32297630 2 + TSS region transcription start site region 45769
Tssr50584 5 32299673 to 32299676 3 - TSS region transcription start site region 50584
Gm15615 5 32311922 to 32312119 197 - pseudogene predicted gene 15615
Gm36840 5 32320764 to 32354883 34119 - antisense lncRNA gene predicted gene, 36840
Tssr45770 5 32353522 to 32353536 14 + TSS region transcription start site region 45770
Tssr45771 5 32353590 to 32353622 32 + TSS region transcription start site region 45771
Tssr45772 5 32353624 to 32353654 30 + TSS region transcription start site region 45772
Tssr50585 5 32354815 to 32354832 17 - TSS region transcription start site region 50585
Tssr50586 5 32354841 to 32354855 14 - TSS region transcription start site region 50586
Gm7596 5 32390047 to 32397908 7861 - lincRNA gene predicted gene 7596
D5Mit334 5 32417678 to 32417799 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 334
Gm5864 5 32420003 to 32420972 969 + pseudogene predicted gene 5864
D5Mit252 5 32442185 to 32442322 137 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 252
Cpgi15720 5 32458481 to 32459832 1351 CpG island CpG island 15720
Tssr50587 5 32458800 to 32458822 22 - TSS region transcription start site region 50587
Ppp1cb 5 32458848 to 32493712 34864 + protein coding gene protein phosphatase 1 catalytic subunit beta
Tssr1453 5 32458957 to 32458968 11 + TSS region transcription start site region 1453
Tssr45773 5 32459016 to 32459110 94 + TSS region transcription start site region 45773
Tssr45774 5 32459135 to 32459174 39 + TSS region transcription start site region 45774
Tssr45775 5 32459176 to 32459189 13 + TSS region transcription start site region 45775
Tssr45776 5 32459238 to 32459249 11 + TSS region transcription start site region 45776
Tssr45777 5 32459251 to 32459291 40 + TSS region transcription start site region 45777
Tssr45778 5 32459297 to 32459355 58 + TSS region transcription start site region 45778
Tssr45779 5 32459591 to 32459601 10 + TSS region transcription start site region 45779
Gm43312 5 32459828 to 32462293 2465 + unclassified gene predicted gene 43312
Tssr45780 5 32459994 to 32459998 4 + TSS region transcription start site region 45780
Gm43313 5 32467195 to 32469429 2234 + unclassified gene predicted gene 43313
D5Mit296 5 32476740 to 32476846 106 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 296
Estq2 5 32476740 to 32476846 106 QTL estradiol regulated response QTL 2
Gm15613 5 32479560 to 32479885 325 - pseudogene predicted gene 15613
Tssr45781 5 32487639 to 32487655 16 + TSS region transcription start site region 45781
Tssr45782 5 32490992 to 32491017 25 + TSS region transcription start site region 45782
Tssr45783 5 32491376 to 32491446 70 + TSS region transcription start site region 45783
Tssr45784 5 32491867 to 32491910 43 + TSS region transcription start site region 45784
Tssr45785 5 32491973 to 32491982 9 + TSS region transcription start site region 45785
Tssr1454 5 32492281 to 32492296 15 + TSS region transcription start site region 1454
Tssr45786 5 32492320 to 32492333 13 + TSS region transcription start site region 45786
Gm15614 5 32507184 to 32583386 76202 - antisense lncRNA gene predicted gene 15614
Gm42964 5 32547936 to 32548317 381 - pseudogene predicted gene 42964
Gm43812 5 32550660 to 32557462 6802 + pseudogene predicted gene 43812
Gm10461 5 32607020 to 32611805 4785 - unclassified gene predicted gene 10461
Tssr45787 5 32610305 to 32610314 9 + TSS region transcription start site region 45787
Tssr45788 5 32610325 to 32610335 10 + TSS region transcription start site region 45788
Tssr45789 5 32610354 to 32610374 20 + TSS region transcription start site region 45789
Cpgi15721 5 32610518 to 32611995 1477 CpG island CpG island 15721
Yes1 5 32611171 to 32687057 75886 + protein coding gene YES proto-oncogene 1, Src family tyrosine kinase
Tssr45790 5 32611195 to 32611245 50 + TSS region transcription start site region 45790
Tssr45791 5 32611247 to 32611265 18 + TSS region transcription start site region 45791
Tssr45792 5 32613489 to 32613494 5 + TSS region transcription start site region 45792
Gm43694 5 32629842 to 32630960 1118 + unclassified gene predicted gene 43694
Tssr45793 5 32637263 to 32637268 5 + TSS region transcription start site region 45793
Gm43852 5 32713072 to 32713988 916 - unclassified gene predicted gene 43852
Cpgi15722 5 32713606 to 32713987 381 CpG island CpG island 15722
Gm2420 5 32720330 to 32736194 15864 + pseudogene predicted gene 2420
Pisd 5 32736303 to 32785636 49333 - protein coding gene phosphatidylserine decarboxylase
Gm20671 5 32737230 to 32827109 89879 - protein coding gene predicted gene 20671
Gm43695 5 32739058 to 32739334 276 - unclassified non-coding RNA gene predicted gene 43695
Tssr50588 5 32742247 to 32742255 8 - TSS region transcription start site region 50588
Tssr45794 5 32746119 to 32746124 5 + TSS region transcription start site region 45794
Tssr50589 5 32746272 to 32746313 41 - TSS region transcription start site region 50589
Tssr50590 5 32746317 to 32746341 24 - TSS region transcription start site region 50590
Tssr50591 5 32746343 to 32746352 9 - TSS region transcription start site region 50591
Tssr45795 5 32746521 to 32746549 28 + TSS region transcription start site region 45795
Cpgi15724 5 32785189 to 32785973 784 CpG island CpG island 15724
Tssr50592 5 32785609 to 32785648 39 - TSS region transcription start site region 50592
Prr14l 5 32789820 to 32854256 64436 - protein coding gene proline rich 14-like
Gm43692 5 32799904 to 32800965 1061 - unclassified gene predicted gene 43692
Tssr50593 5 32820690 to 32820707 17 - TSS region transcription start site region 50593
Lgq6 5 100630065 to 31975890 -68654175 QTL late growth QTL 6
W10q16 5 100630065 to 31975890 -68654175 QTL weight 10 weeks QTL 16