Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:31216315-31496741

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppm1g 5 31202668 to 31220545 17877 - protein coding gene protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform
Tssr50540 5 31219264 to 31219267 3 - TSS region transcription start site region 50540
Cpgi15707 5 31219913 to 31221252 1339 CpG island CpG island 15707
Tssr50541 5 31220491 to 31220627 136 - TSS region transcription start site region 50541
Tssr45693 5 31220748 to 31220795 47 + TSS region transcription start site region 45693
D5Jcs307 5 31226539 to 31226787 248 DNA segment DNA segment, Chr 5, John C. Schimenti 307
Cpgi15708 5 31240627 to 31241887 1260 CpG island CpG island 15708
Gm9970 5 31240675 to 31241232 557 - protein coding gene predicted gene 9970
Nrbp1 5 31240883 to 31251566 10683 + protein coding gene nuclear receptor binding protein 1
Tssr45694 5 31240886 to 31240941 55 + TSS region transcription start site region 45694
Tssr45695 5 31240948 to 31240959 11 + TSS region transcription start site region 45695
Tssr50542 5 31241215 to 31241243 28 - TSS region transcription start site region 50542
Tssr45696 5 31242624 to 31242628 4 + TSS region transcription start site region 45696
Gm46909 5 31250672 to 31251999 1327 - lncRNA gene predicted gene, 46909
Cpgi15709 5 31251316 to 31252370 1054 CpG island CpG island 15709
Tssr45697 5 31251678 to 31251728 50 + TSS region transcription start site region 45697
Krtcap3 5 31251706 to 31253197 1491 + protein coding gene keratinocyte associated protein 3
Tssr45698 5 31251743 to 31251758 15 + TSS region transcription start site region 45698
Tssr45699 5 31251911 to 31251922 11 + TSS region transcription start site region 45699
Ift172 5 31253279 to 31291114 37835 - protein coding gene intraflagellar transport 172
Tssr50543 5 31254565 to 31254626 61 - TSS region transcription start site region 50543
Tssr50544 5 31254685 to 31254722 37 - TSS region transcription start site region 50544
Cpgi15710 5 31290824 to 31291482 658 CpG island CpG island 15710
Tssr50545 5 31291013 to 31291024 11 - TSS region transcription start site region 50545
Tssr50546 5 31291026 to 31291143 117 - TSS region transcription start site region 50546
Tssr45700 5 31291228 to 31291242 14 + TSS region transcription start site region 45700
Tssr45701 5 31291352 to 31291365 13 + TSS region transcription start site region 45701
Fndc4 5 31292245 to 31295956 3711 - protein coding gene fibronectin type III domain containing 4
Cpgi15711 5 31295253 to 31296168 915 CpG island CpG island 15711
Tssr50547 5 31295673 to 31295697 24 - TSS region transcription start site region 50547
Tssr50548 5 31295862 to 31295942 80 - TSS region transcription start site region 50548
Gckr 5 31297443 to 31327314 29871 + protein coding gene glucokinase regulatory protein
Tssr45702 5 31297551 to 31297586 35 + TSS region transcription start site region 45702
Tssr45703 5 31297597 to 31297602 5 + TSS region transcription start site region 45703
Tssr45704 5 31297603 to 31297616 13 + TSS region transcription start site region 45704
Tssr45705 5 31297794 to 31297797 3 + TSS region transcription start site region 45705
Gm19457 5 31356315 to 31356743 428 - pseudogene predicted gene, 19457
Gm40275 5 31402547 to 31404241 1694 - protein coding gene predicted gene, 40275
Gm45944 5 31405867 to 31408311 2444 - protein coding gene predicted gene, 45944
Gm36182 5 31412188 to 31415591 3403 - lncRNA gene predicted gene, 36182
Gm43659 5 31450824 to 31451451 627 + pseudogene predicted gene 43659
4930478M09Rik 5 31451219 to 31452331 1112 - unclassified gene RIKEN cDNA 4930478M09 gene
Cpgi15712 5 31452333 to 31452513 180 CpG island CpG island 15712
Tssr45706 5 31452427 to 31452452 25 + TSS region transcription start site region 45706
Zfp512 5 31452431 to 31481754 29323 + protein coding gene zinc finger protein 512
Tssr45707 5 31452458 to 31452503 45 + TSS region transcription start site region 45707
Tssr45708 5 31452525 to 31452534 9 + TSS region transcription start site region 45708
Tssr45709 5 31452683 to 31452688 5 + TSS region transcription start site region 45709
Gm43059 5 31461022 to 31462409 1387 + unclassified gene predicted gene 43059
D5Mit350 5 31482042 to 31482156 114 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 350
Tssr45710 5 31485858 to 31485865 7 + TSS region transcription start site region 45710
4930548H24Rik 5 31485859 to 31488262 2403 + protein coding gene RIKEN cDNA 4930548H24 gene
Tssr45711 5 31485881 to 31485891 10 + TSS region transcription start site region 45711
4930566F21Rik 5 31486629 to 31495179 8550 - antisense lncRNA gene RIKEN cDNA 4930566F21 gene
Tssr50549 5 31489106 to 31489154 48 - TSS region transcription start site region 50549
Cpgi15713 5 31494474 to 31495354 880 CpG island CpG island 15713
Tssr45712 5 31494736 to 31494778 42 + TSS region transcription start site region 45712
Gpn1 5 31494752 to 31511631 16879 + protein coding gene GPN-loop GTPase 1
Tssr1449 5 31494799 to 31494807 8 + TSS region transcription start site region 1449