Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:31099254-31209280

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc30a3 5 31086106 to 31108237 22131 - protein coding gene solute carrier family 30 (zinc transporter), member 3
Tssr50527 5 31108225 to 31108237 12 - TSS region transcription start site region 50527
Dnajc5g 5 31108291 to 31112526 4235 + protein coding gene DnaJ heat shock protein family (Hsp40) member C5 gamma
Tssr45677 5 31108307 to 31108341 34 + TSS region transcription start site region 45677
Tssr45678 5 31116568 to 31116581 13 + TSS region transcription start site region 45678
Tssr45679 5 31116582 to 31116587 5 + TSS region transcription start site region 45679
Tssr45680 5 31116602 to 31116618 16 + TSS region transcription start site region 45680
Tssr45681 5 31116681 to 31116690 9 + TSS region transcription start site region 45681
Tssr45682 5 31116702 to 31116713 11 + TSS region transcription start site region 45682
Trim54 5 31116712 to 31137630 20918 + protein coding gene tripartite motif-containing 54
Tssr45683 5 31116722 to 31116727 5 + TSS region transcription start site region 45683
Gm40273 5 31118410 to 31119423 1013 - lncRNA gene predicted gene, 40273
Gm15469 5 31135753 to 31137344 1591 - antisense lncRNA gene predicted gene 15469
Cpgi15700 5 31136078 to 31136282 204 CpG island CpG island 15700
Cpgi15701 5 31136775 to 31139017 2242 CpG island CpG island 15701
Ucn 5 31138063 to 31138829 766 - protein coding gene urocortin
Tssr50528 5 31138875 to 31138887 12 - TSS region transcription start site region 50528
Mpv17 5 31140663 to 31154251 13588 - protein coding gene MpV17 mitochondrial inner membrane protein
Gm29609 5 31144739 to 31179911 35172 - protein coding gene predicted gene 29609
Cpgi15702 5 31154101 to 31154475 374 CpG island CpG island 15702
Tssr50529 5 31154205 to 31154253 48 - TSS region transcription start site region 50529
Tssr45684 5 31154254 to 31154280 26 + TSS region transcription start site region 45684
Gtf3c2 5 31156006 to 31180144 24138 - protein coding gene general transcription factor IIIC, polypeptide 2, beta
Tssr50530 5 31174017 to 31174030 13 - TSS region transcription start site region 50530
Cpgi15703 5 31179294 to 31180511 1217 CpG island CpG island 15703
Tssr50531 5 31179901 to 31179942 41 - TSS region transcription start site region 50531
Tssr50532 5 31180110 to 31180158 48 - TSS region transcription start site region 50532
Tssr45685 5 31180182 to 31180210 28 + TSS region transcription start site region 45685
Eif2b4 5 31187558 to 31193139 5581 - protein coding gene eukaryotic translation initiation factor 2B, subunit 4 delta
Cpgi15704 5 31192518 to 31194097 1579 CpG island CpG island 15704
Tssr50533 5 31192698 to 31192758 60 - TSS region transcription start site region 50533
Tssr50534 5 31193021 to 31193052 31 - TSS region transcription start site region 50534
Tssr50535 5 31193055 to 31193075 20 - TSS region transcription start site region 50535
Tssr50536 5 31193076 to 31193090 14 - TSS region transcription start site region 50536
Tssr50537 5 31193105 to 31193134 29 - TSS region transcription start site region 50537
Tssr45686 5 31193222 to 31193235 13 + TSS region transcription start site region 45686
Tssr45687 5 31193263 to 31193318 55 + TSS region transcription start site region 45687
Snx17 5 31193304 to 31198900 5596 + protein coding gene sorting nexin 17
Tssr45688 5 31195587 to 31195592 5 + TSS region transcription start site region 45688
Tssr45689 5 31196711 to 31196718 7 + TSS region transcription start site region 45689
Zfp513 5 31198981 to 31202303 3322 - protein coding gene zinc finger protein 513
Cpgi15705 5 31200337 to 31200566 229 CpG island CpG island 15705
Gm46908 5 31201776 to 31202798 1022 + lncRNA gene predicted gene, 46908
Cpgi15706 5 31201812 to 31202617 805 CpG island CpG island 15706
Tssr50538 5 31201932 to 31201948 16 - TSS region transcription start site region 50538
Tssr50539 5 31202230 to 31202329 99 - TSS region transcription start site region 50539
Tssr45690 5 31202466 to 31202506 40 + TSS region transcription start site region 45690
Ppm1g 5 31202668 to 31220545 17877 - protein coding gene protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform
Tssr45691 5 31203251 to 31203272 21 + TSS region transcription start site region 45691
Tssr45692 5 31205046 to 31205094 48 + TSS region transcription start site region 45692