Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:30975824-31606482

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174 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcf23 5 30968662 to 30977018 8356 + protein coding gene transcription factor 23
Slc5a6 5 31036036 to 31048924 12888 - protein coding gene solute carrier family 5 (sodium-dependent vitamin transporter), member 6
Tssr50519 5 31038262 to 31038276 14 - TSS region transcription start site region 50519
D5Jcs306 5 31046083 to 31046276 193 DNA segment DNA segment, Chr 5, John C. Schimenti 306
Cpgi15696 5 31047735 to 31048883 1148 CpG island CpG island 15696
Tssr50520 5 31047858 to 31047867 9 - TSS region transcription start site region 50520
Tssr50521 5 31047879 to 31047886 7 - TSS region transcription start site region 50521
Tssr50522 5 31047998 to 31048009 11 - TSS region transcription start site region 50522
Tssr50523 5 31048014 to 31048038 24 - TSS region transcription start site region 50523
Tssr50524 5 31048236 to 31048276 40 - TSS region transcription start site region 50524
Tssr45658 5 31048627 to 31048673 46 + TSS region transcription start site region 45658
Atraid 5 31048640 to 31054633 5993 + protein coding gene all-trans retinoic acid induced differentiation factor
Tssr45659 5 31049029 to 31049034 5 + TSS region transcription start site region 45659
Cpgi15697 5 31054392 to 31055513 1121 CpG island CpG island 15697
Tssr45660 5 31054766 to 31054809 43 + TSS region transcription start site region 45660
Cad 5 31054780 to 31078479 23699 + protein coding gene carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
Tssr45661 5 31054821 to 31054865 44 + TSS region transcription start site region 45661
Tssr45662 5 31056526 to 31056542 16 + TSS region transcription start site region 45662
Tssr45663 5 31074804 to 31074811 7 + TSS region transcription start site region 45663
Tssr45664 5 31074822 to 31074833 11 + TSS region transcription start site region 45664
Tssr45665 5 31074845 to 31074883 38 + TSS region transcription start site region 45665
Tssr45666 5 31077004 to 31077011 7 + TSS region transcription start site region 45666
Tssr45667 5 31077040 to 31077047 7 + TSS region transcription start site region 45667
Tssr45668 5 31077064 to 31077075 11 + TSS region transcription start site region 45668
Tssr45669 5 31077081 to 31077093 12 + TSS region transcription start site region 45669
Tssr45670 5 31077104 to 31077108 4 + TSS region transcription start site region 45670
Tssr45671 5 31077113 to 31077128 15 + TSS region transcription start site region 45671
Tssr45672 5 31077177 to 31077186 9 + TSS region transcription start site region 45672
Tssr45673 5 31077472 to 31077482 10 + TSS region transcription start site region 45673
Tssr45674 5 31077505 to 31077510 5 + TSS region transcription start site region 45674
Tssr45675 5 31077599 to 31077608 9 + TSS region transcription start site region 45675
Tssr45676 5 31077772 to 31077810 38 + TSS region transcription start site region 45676
Gm38601 5 31080433 to 31083851 3418 - lncRNA gene predicted gene, 38601
Slc30a3 5 31086106 to 31108237 22131 - protein coding gene solute carrier family 30 (zinc transporter), member 3
Cpgi15698 5 31092042 to 31093719 1677 CpG island CpG island 15698
Tssr50525 5 31093473 to 31093499 26 - TSS region transcription start site region 50525
Tssr50526 5 31093500 to 31093526 26 - TSS region transcription start site region 50526
Cpgi15699 5 31094031 to 31095729 1698 CpG island CpG island 15699
Gm9924 5 31094984 to 31097294 2310 + unclassified gene predicted gene 9924
Tssr50527 5 31108225 to 31108237 12 - TSS region transcription start site region 50527
Dnajc5g 5 31108291 to 31112526 4235 + protein coding gene DnaJ heat shock protein family (Hsp40) member C5 gamma
Tssr45677 5 31108307 to 31108341 34 + TSS region transcription start site region 45677
Tssr45678 5 31116568 to 31116581 13 + TSS region transcription start site region 45678
Tssr45679 5 31116582 to 31116587 5 + TSS region transcription start site region 45679
Tssr45680 5 31116602 to 31116618 16 + TSS region transcription start site region 45680
Tssr45681 5 31116681 to 31116690 9 + TSS region transcription start site region 45681
Tssr45682 5 31116702 to 31116713 11 + TSS region transcription start site region 45682
Trim54 5 31116712 to 31137630 20918 + protein coding gene tripartite motif-containing 54
Tssr45683 5 31116722 to 31116727 5 + TSS region transcription start site region 45683
Gm40273 5 31118410 to 31119423 1013 - lncRNA gene predicted gene, 40273
Gm15469 5 31135753 to 31137344 1591 - antisense lncRNA gene predicted gene 15469
Cpgi15700 5 31136078 to 31136282 204 CpG island CpG island 15700
Cpgi15701 5 31136775 to 31139017 2242 CpG island CpG island 15701
Ucn 5 31138063 to 31138829 766 - protein coding gene urocortin
Tssr50528 5 31138875 to 31138887 12 - TSS region transcription start site region 50528
Mpv17 5 31140663 to 31154251 13588 - protein coding gene MpV17 mitochondrial inner membrane protein
Gm29609 5 31144739 to 31179911 35172 - protein coding gene predicted gene 29609
Cpgi15702 5 31154101 to 31154475 374 CpG island CpG island 15702
Tssr50529 5 31154205 to 31154253 48 - TSS region transcription start site region 50529
Tssr45684 5 31154254 to 31154280 26 + TSS region transcription start site region 45684
Gtf3c2 5 31156006 to 31180144 24138 - protein coding gene general transcription factor IIIC, polypeptide 2, beta
Tssr50530 5 31174017 to 31174030 13 - TSS region transcription start site region 50530
Cpgi15703 5 31179294 to 31180511 1217 CpG island CpG island 15703
Tssr50531 5 31179901 to 31179942 41 - TSS region transcription start site region 50531
Tssr50532 5 31180110 to 31180158 48 - TSS region transcription start site region 50532
Tssr45685 5 31180182 to 31180210 28 + TSS region transcription start site region 45685
Eif2b4 5 31187558 to 31193139 5581 - protein coding gene eukaryotic translation initiation factor 2B, subunit 4 delta
Cpgi15704 5 31192518 to 31194097 1579 CpG island CpG island 15704
Tssr50533 5 31192698 to 31192758 60 - TSS region transcription start site region 50533
Tssr50534 5 31193021 to 31193052 31 - TSS region transcription start site region 50534
Tssr50535 5 31193055 to 31193075 20 - TSS region transcription start site region 50535
Tssr50536 5 31193076 to 31193090 14 - TSS region transcription start site region 50536
Tssr50537 5 31193105 to 31193134 29 - TSS region transcription start site region 50537
Tssr45686 5 31193222 to 31193235 13 + TSS region transcription start site region 45686
Tssr45687 5 31193263 to 31193318 55 + TSS region transcription start site region 45687
Snx17 5 31193304 to 31198900 5596 + protein coding gene sorting nexin 17
Tssr45688 5 31195587 to 31195592 5 + TSS region transcription start site region 45688
Tssr45689 5 31196711 to 31196718 7 + TSS region transcription start site region 45689
Zfp513 5 31198981 to 31202303 3322 - protein coding gene zinc finger protein 513
Cpgi15705 5 31200337 to 31200566 229 CpG island CpG island 15705
Gm46908 5 31201776 to 31202798 1022 + lncRNA gene predicted gene, 46908
Cpgi15706 5 31201812 to 31202617 805 CpG island CpG island 15706
Tssr50538 5 31201932 to 31201948 16 - TSS region transcription start site region 50538
Tssr50539 5 31202230 to 31202329 99 - TSS region transcription start site region 50539
Tssr45690 5 31202466 to 31202506 40 + TSS region transcription start site region 45690
Ppm1g 5 31202668 to 31220545 17877 - protein coding gene protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform
Tssr45691 5 31203251 to 31203272 21 + TSS region transcription start site region 45691
Tssr45692 5 31205046 to 31205094 48 + TSS region transcription start site region 45692
Gm42798 5 31210344 to 31214315 3971 - unclassified gene predicted gene 42798
Tssr50540 5 31219264 to 31219267 3 - TSS region transcription start site region 50540
Cpgi15707 5 31219913 to 31221252 1339 CpG island CpG island 15707
Tssr50541 5 31220491 to 31220627 136 - TSS region transcription start site region 50541
Tssr45693 5 31220748 to 31220795 47 + TSS region transcription start site region 45693
D5Jcs307 5 31226539 to 31226787 248 DNA segment DNA segment, Chr 5, John C. Schimenti 307
Cpgi15708 5 31240627 to 31241887 1260 CpG island CpG island 15708
Gm9970 5 31240675 to 31241232 557 - protein coding gene predicted gene 9970
Nrbp1 5 31240883 to 31251566 10683 + protein coding gene nuclear receptor binding protein 1
Tssr45694 5 31240886 to 31240941 55 + TSS region transcription start site region 45694
Tssr45695 5 31240948 to 31240959 11 + TSS region transcription start site region 45695
Tssr50542 5 31241215 to 31241243 28 - TSS region transcription start site region 50542
Tssr45696 5 31242624 to 31242628 4 + TSS region transcription start site region 45696
Gm46909 5 31250672 to 31251999 1327 - lncRNA gene predicted gene, 46909
Cpgi15709 5 31251316 to 31252370 1054 CpG island CpG island 15709
Tssr45697 5 31251678 to 31251728 50 + TSS region transcription start site region 45697
Krtcap3 5 31251706 to 31253197 1491 + protein coding gene keratinocyte associated protein 3
Tssr45698 5 31251743 to 31251758 15 + TSS region transcription start site region 45698
Tssr45699 5 31251911 to 31251922 11 + TSS region transcription start site region 45699
Ift172 5 31253279 to 31291114 37835 - protein coding gene intraflagellar transport 172
Tssr50543 5 31254565 to 31254626 61 - TSS region transcription start site region 50543
Tssr50544 5 31254685 to 31254722 37 - TSS region transcription start site region 50544
Cpgi15710 5 31290824 to 31291482 658 CpG island CpG island 15710
Tssr50545 5 31291013 to 31291024 11 - TSS region transcription start site region 50545
Tssr50546 5 31291026 to 31291143 117 - TSS region transcription start site region 50546
Tssr45700 5 31291228 to 31291242 14 + TSS region transcription start site region 45700
Tssr45701 5 31291352 to 31291365 13 + TSS region transcription start site region 45701
Fndc4 5 31292245 to 31295956 3711 - protein coding gene fibronectin type III domain containing 4
Cpgi15711 5 31295253 to 31296168 915 CpG island CpG island 15711
Tssr50547 5 31295673 to 31295697 24 - TSS region transcription start site region 50547
Tssr50548 5 31295862 to 31295942 80 - TSS region transcription start site region 50548
Gckr 5 31297443 to 31327314 29871 + protein coding gene glucokinase regulatory protein
Tssr45702 5 31297551 to 31297586 35 + TSS region transcription start site region 45702
Tssr45703 5 31297597 to 31297602 5 + TSS region transcription start site region 45703
Tssr45704 5 31297603 to 31297616 13 + TSS region transcription start site region 45704
Tssr45705 5 31297794 to 31297797 3 + TSS region transcription start site region 45705
Gm19457 5 31356315 to 31356743 428 - pseudogene predicted gene, 19457
Gm40275 5 31402547 to 31404241 1694 - protein coding gene predicted gene, 40275
Gm45944 5 31405867 to 31408311 2444 - protein coding gene predicted gene, 45944
Gm36182 5 31412188 to 31415591 3403 - lncRNA gene predicted gene, 36182
Gm43659 5 31450824 to 31451451 627 + pseudogene predicted gene 43659
4930478M09Rik 5 31451219 to 31452331 1112 - unclassified gene RIKEN cDNA 4930478M09 gene
Cpgi15712 5 31452333 to 31452513 180 CpG island CpG island 15712
Tssr45706 5 31452427 to 31452452 25 + TSS region transcription start site region 45706
Zfp512 5 31452431 to 31481754 29323 + protein coding gene zinc finger protein 512
Tssr45707 5 31452458 to 31452503 45 + TSS region transcription start site region 45707
Tssr45708 5 31452525 to 31452534 9 + TSS region transcription start site region 45708
Tssr45709 5 31452683 to 31452688 5 + TSS region transcription start site region 45709
Gm43059 5 31461022 to 31462409 1387 + unclassified gene predicted gene 43059
D5Mit350 5 31482042 to 31482156 114 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 350
Tssr45710 5 31485858 to 31485865 7 + TSS region transcription start site region 45710
4930548H24Rik 5 31485859 to 31488262 2403 + protein coding gene RIKEN cDNA 4930548H24 gene
Tssr45711 5 31485881 to 31485891 10 + TSS region transcription start site region 45711
4930566F21Rik 5 31486629 to 31495179 8550 - antisense lncRNA gene RIKEN cDNA 4930566F21 gene
Tssr50549 5 31489106 to 31489154 48 - TSS region transcription start site region 50549
Cpgi15713 5 31494474 to 31495354 880 CpG island CpG island 15713
Tssr45712 5 31494736 to 31494778 42 + TSS region transcription start site region 45712
Gpn1 5 31494752 to 31511631 16879 + protein coding gene GPN-loop GTPase 1
Tssr1449 5 31494799 to 31494807 8 + TSS region transcription start site region 1449
Supt7l 5 31514569 to 31526762 12193 - protein coding gene suppressor of Ty 7-like
Tssr50550 5 31520709 to 31520739 30 - TSS region transcription start site region 50550
Tssr50551 5 31526666 to 31526684 18 - TSS region transcription start site region 50551
Tssr50552 5 31526693 to 31526747 54 - TSS region transcription start site region 50552
Cpgi15714 5 31526797 to 31527660 863 CpG island CpG island 15714
Tssr45713 5 31526989 to 31527034 45 + TSS region transcription start site region 45713
Slc4a1ap 5 31526995 to 31556932 29937 + protein coding gene solute carrier family 4 (anion exchanger), member 1, adaptor protein
Tssr45714 5 31527064 to 31527075 11 + TSS region transcription start site region 45714
Tssr45715 5 31527105 to 31527112 7 + TSS region transcription start site region 45715
Gm43660 5 31560812 to 31569072 8260 - lincRNA gene predicted gene 43660
Tssr45716 5 31562713 to 31562722 9 + TSS region transcription start site region 45716
E130118H10Rik 5 31567222 to 31573092 5870 unclassified non-coding RNA gene RIKEN cDNA E130118H10 gene
Tssr45717 5 31569374 to 31569387 13 + TSS region transcription start site region 45717
AI839979 5 31569595 to 31571397 1802 - lincRNA gene expressed sequence AI839979
Tssr50553 5 31571349 to 31571358 9 - TSS region transcription start site region 50553
Tssr50554 5 31571405 to 31571429 24 - TSS region transcription start site region 50554
Tssr50555 5 31573437 to 31573444 7 - TSS region transcription start site region 50555
Tssr50556 5 31576614 to 31576631 17 - TSS region transcription start site region 50556
2900076G11Rik 5 31581079 to 31581709 630 + unclassified gene RIKEN cDNA 2900076G11 gene
Tssr45718 5 31582228 to 31582238 10 + TSS region transcription start site region 45718
Gm38424 5 31595752 to 31663432 67680 + lncRNA gene predicted gene, 38424
Cpgi15715 5 31596615 to 31597035 420 CpG island CpG island 15715
Tssr50557 5 31596717 to 31596738 21 - TSS region transcription start site region 50557
Tssr45719 5 31596865 to 31596939 74 + TSS region transcription start site region 45719
Gm43809 5 31596938 to 31701972 105034 + unclassified non-coding RNA gene predicted gene 43809
Tssr45720 5 31596976 to 31596994 18 + TSS region transcription start site region 45720
Tssr45721 5 31602610 to 31602655 45 + TSS region transcription start site region 45721