Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:30974822-31174833

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcf23 5 30968662 to 30977018 8356 + protein coding gene transcription factor 23
Slc5a6 5 31036036 to 31048924 12888 - protein coding gene solute carrier family 5 (sodium-dependent vitamin transporter), member 6
Tssr50519 5 31038262 to 31038276 14 - TSS region transcription start site region 50519
D5Jcs306 5 31046083 to 31046276 193 DNA segment DNA segment, Chr 5, John C. Schimenti 306
Cpgi15696 5 31047735 to 31048883 1148 CpG island CpG island 15696
Tssr50520 5 31047858 to 31047867 9 - TSS region transcription start site region 50520
Tssr50521 5 31047879 to 31047886 7 - TSS region transcription start site region 50521
Tssr50522 5 31047998 to 31048009 11 - TSS region transcription start site region 50522
Tssr50523 5 31048014 to 31048038 24 - TSS region transcription start site region 50523
Tssr50524 5 31048236 to 31048276 40 - TSS region transcription start site region 50524
Tssr45658 5 31048627 to 31048673 46 + TSS region transcription start site region 45658
Atraid 5 31048640 to 31054633 5993 + protein coding gene all-trans retinoic acid induced differentiation factor
Tssr45659 5 31049029 to 31049034 5 + TSS region transcription start site region 45659
Cpgi15697 5 31054392 to 31055513 1121 CpG island CpG island 15697
Tssr45660 5 31054766 to 31054809 43 + TSS region transcription start site region 45660
Cad 5 31054780 to 31078479 23699 + protein coding gene carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
Tssr45661 5 31054821 to 31054865 44 + TSS region transcription start site region 45661
Tssr45662 5 31056526 to 31056542 16 + TSS region transcription start site region 45662
Tssr45663 5 31074804 to 31074811 7 + TSS region transcription start site region 45663
Tssr45664 5 31074822 to 31074833 11 + TSS region transcription start site region 45664
Tssr45665 5 31074845 to 31074883 38 + TSS region transcription start site region 45665
Tssr45666 5 31077004 to 31077011 7 + TSS region transcription start site region 45666
Tssr45667 5 31077040 to 31077047 7 + TSS region transcription start site region 45667
Tssr45668 5 31077064 to 31077075 11 + TSS region transcription start site region 45668
Tssr45669 5 31077081 to 31077093 12 + TSS region transcription start site region 45669
Tssr45670 5 31077104 to 31077108 4 + TSS region transcription start site region 45670
Tssr45671 5 31077113 to 31077128 15 + TSS region transcription start site region 45671
Tssr45672 5 31077177 to 31077186 9 + TSS region transcription start site region 45672
Tssr45673 5 31077472 to 31077482 10 + TSS region transcription start site region 45673
Tssr45674 5 31077505 to 31077510 5 + TSS region transcription start site region 45674
Tssr45675 5 31077599 to 31077608 9 + TSS region transcription start site region 45675
Tssr45676 5 31077772 to 31077810 38 + TSS region transcription start site region 45676
Gm38601 5 31080433 to 31083851 3418 - lncRNA gene predicted gene, 38601
Slc30a3 5 31086106 to 31108237 22131 - protein coding gene solute carrier family 30 (zinc transporter), member 3
Cpgi15698 5 31092042 to 31093719 1677 CpG island CpG island 15698
Tssr50525 5 31093473 to 31093499 26 - TSS region transcription start site region 50525
Tssr50526 5 31093500 to 31093526 26 - TSS region transcription start site region 50526
Cpgi15699 5 31094031 to 31095729 1698 CpG island CpG island 15699
Gm9924 5 31094984 to 31097294 2310 + unclassified gene predicted gene 9924
Tssr50527 5 31108225 to 31108237 12 - TSS region transcription start site region 50527
Dnajc5g 5 31108291 to 31112526 4235 + protein coding gene DnaJ heat shock protein family (Hsp40) member C5 gamma
Tssr45677 5 31108307 to 31108341 34 + TSS region transcription start site region 45677
Tssr45678 5 31116568 to 31116581 13 + TSS region transcription start site region 45678
Tssr45679 5 31116582 to 31116587 5 + TSS region transcription start site region 45679
Tssr45680 5 31116602 to 31116618 16 + TSS region transcription start site region 45680
Tssr45681 5 31116681 to 31116690 9 + TSS region transcription start site region 45681
Tssr45682 5 31116702 to 31116713 11 + TSS region transcription start site region 45682
Trim54 5 31116712 to 31137630 20918 + protein coding gene tripartite motif-containing 54
Tssr45683 5 31116722 to 31116727 5 + TSS region transcription start site region 45683
Gm40273 5 31118410 to 31119423 1013 - lncRNA gene predicted gene, 40273
Gm15469 5 31135753 to 31137344 1591 - antisense lncRNA gene predicted gene 15469
Cpgi15700 5 31136078 to 31136282 204 CpG island CpG island 15700
Cpgi15701 5 31136775 to 31139017 2242 CpG island CpG island 15701
Ucn 5 31138063 to 31138829 766 - protein coding gene urocortin
Tssr50528 5 31138875 to 31138887 12 - TSS region transcription start site region 50528
Mpv17 5 31140663 to 31154251 13588 - protein coding gene MpV17 mitochondrial inner membrane protein
Gm29609 5 31144739 to 31179911 35172 - protein coding gene predicted gene 29609
Cpgi15702 5 31154101 to 31154475 374 CpG island CpG island 15702
Tssr50529 5 31154205 to 31154253 48 - TSS region transcription start site region 50529
Tssr45684 5 31154254 to 31154280 26 + TSS region transcription start site region 45684
Gtf3c2 5 31156006 to 31180144 24138 - protein coding gene general transcription factor IIIC, polypeptide 2, beta
Tssr50530 5 31174017 to 31174030 13 - TSS region transcription start site region 50530