Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:30839780-31293479

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192 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mapre3 5 30814641 to 30866106 51465 + protein coding gene microtubule-associated protein, RP/EB family, member 3
Tssr45626 5 30853788 to 30853794 6 + TSS region transcription start site region 45626
Tssr45627 5 30853796 to 30853801 5 + TSS region transcription start site region 45627
Tssr45628 5 30853808 to 30853848 40 + TSS region transcription start site region 45628
Gm43808 5 30868764 to 30870828 2064 - unclassified gene predicted gene 43808
Cpgi15687 5 30869171 to 30870105 934 CpG island CpG island 15687
Tssr45629 5 30869577 to 30869580 3 + TSS region transcription start site region 45629
Tssr45630 5 30869598 to 30869620 22 + TSS region transcription start site region 45630
Tssr45631 5 30869623 to 30869664 41 + TSS region transcription start site region 45631
Tmem214 5 30869647 to 30877469 7822 + protein coding gene transmembrane protein 214
Tssr45632 5 30873066 to 30873100 34 + TSS region transcription start site region 45632
Gm35795 5 30886165 to 30888890 2725 - lncRNA gene predicted gene, 35795
Cpgi15688 5 30887493 to 30888140 647 CpG island CpG island 15688
Tssr45633 5 30887518 to 30887531 13 + TSS region transcription start site region 45633
Tssr45634 5 30887608 to 30887612 4 + TSS region transcription start site region 45634
n-TYgta9 5 30888083 to 30888171 88 + tRNA gene nuclear encoded tRNA tyrosine 9 (anticodon GTA)
Agbl5 5 30888492 to 30906666 18174 + protein coding gene ATP/GTP binding protein-like 5
n-TAagc15 5 30888515 to 30888587 72 + tRNA gene nuclear encoded tRNA alanine 15 (anticodon AGC)
Cpgi15689 5 30888566 to 30889612 1046 CpG island CpG island 15689
Tssr50502 5 30888786 to 30888796 10 - TSS region transcription start site region 50502
Tssr45635 5 30888927 to 30888997 70 + TSS region transcription start site region 45635
Tssr45636 5 30889151 to 30889192 41 + TSS region transcription start site region 45636
Tssr45637 5 30889296 to 30889320 24 + TSS region transcription start site region 45637
Tssr45638 5 30889328 to 30889406 78 + TSS region transcription start site region 45638
Tssr45639 5 30889413 to 30889425 12 + TSS region transcription start site region 45639
5930420M18Rik 5 30897300 to 30899580 2280 + unclassified gene RIKEN cDNA 5930420M18 gene
Ost4 5 30906516 to 30907810 1294 - protein coding gene oligosaccharyltransferase complex subunit 4 (non-catalytic)
Cpgi15690 5 30907238 to 30908366 1128 CpG island CpG island 15690
Tssr50503 5 30907680 to 30907691 11 - TSS region transcription start site region 50503
Tssr50504 5 30907692 to 30907753 61 - TSS region transcription start site region 50504
Tssr45640 5 30907934 to 30907955 21 + TSS region transcription start site region 45640
Tssr45641 5 30913398 to 30913403 5 + TSS region transcription start site region 45641
Emilin1 5 30913402 to 30921277 7875 + protein coding gene elastin microfibril interfacer 1
Tssr45642 5 30913418 to 30913439 21 + TSS region transcription start site region 45642
Tssr45643 5 30913454 to 30913487 33 + TSS region transcription start site region 45643
Tssr45644 5 30913504 to 30913515 11 + TSS region transcription start site region 45644
Tssr45645 5 30913574 to 30913585 11 + TSS region transcription start site region 45645
Tssr45646 5 30913586 to 30913628 42 + TSS region transcription start site region 45646
Tssr45647 5 30913687 to 30913792 105 + TSS region transcription start site region 45647
Cpgi15691 5 30920680 to 30922084 1404 CpG island CpG island 15691
Khk 5 30921436 to 30931248 9812 + protein coding gene ketohexokinase
Tssr45648 5 30921524 to 30921550 26 + TSS region transcription start site region 45648
Tssr45649 5 30921567 to 30921583 16 + TSS region transcription start site region 45649
Tssr45650 5 30921825 to 30921866 41 + TSS region transcription start site region 45650
Tssr45651 5 30921867 to 30921896 29 + TSS region transcription start site region 45651
Cgref1 5 30933143 to 30945480 12337 - protein coding gene cell growth regulator with EF hand domain 1
Tssr50505 5 30933872 to 30933882 10 - TSS region transcription start site region 50505
D5Jcs305 5 30943423 to 30943579 156 DNA segment DNA segment, Chr 5, John C. Schimenti 305
Cpgi15692 5 30945135 to 30945753 618 CpG island CpG island 15692
Tssr50506 5 30945393 to 30945455 62 - TSS region transcription start site region 50506
Tssr1446 5 30945475 to 30945484 9 - TSS region transcription start site region 1446
Tssr50507 5 30945506 to 30945587 81 - TSS region transcription start site region 50507
Tssr50508 5 30945596 to 30945622 26 - TSS region transcription start site region 50508
Tssr50509 5 30945654 to 30945663 9 - TSS region transcription start site region 50509
Tssr50510 5 30945671 to 30945676 5 - TSS region transcription start site region 50510
Cpgi15693 5 30949748 to 30950206 458 CpG island CpG island 15693
Tssr50511 5 30949921 to 30949941 20 - TSS region transcription start site region 50511
Tssr45652 5 30950046 to 30950133 87 + TSS region transcription start site region 45652
Abhd1 5 30950066 to 30955091 5025 + protein coding gene abhydrolase domain containing 1
Tssr45653 5 30950135 to 30950147 12 + TSS region transcription start site region 45653
Preb 5 30951667 to 30960356 8689 - protein coding gene prolactin regulatory element binding
Tssr50512 5 30957977 to 30958000 23 - TSS region transcription start site region 50512
Cpgi15694 5 30959682 to 30960687 1005 CpG island CpG island 15694
Tssr50513 5 30960170 to 30960182 12 - TSS region transcription start site region 50513
Tssr50514 5 30960198 to 30960209 11 - TSS region transcription start site region 50514
Tssr50515 5 30960217 to 30960228 11 - TSS region transcription start site region 50515
Tssr1447 5 30960233 to 30960236 3 - TSS region transcription start site region 1447
Tssr50516 5 30960236 to 30960320 84 - TSS region transcription start site region 50516
Tssr50517 5 30960326 to 30960339 13 - TSS region transcription start site region 50517
Tssr1448 5 30960520 to 30960531 11 + TSS region transcription start site region 1448
Tssr50518 5 30961372 to 30961386 14 - TSS region transcription start site region 50518
Tssr45654 5 30968604 to 30968615 11 + TSS region transcription start site region 45654
Tssr45655 5 30968637 to 30968646 9 + TSS region transcription start site region 45655
Tssr45656 5 30968655 to 30968667 12 + TSS region transcription start site region 45656
Tcf23 5 30968662 to 30977018 8356 + protein coding gene transcription factor 23
Tssr45657 5 30969770 to 30969787 17 + TSS region transcription start site region 45657
Cpgi15695 5 30970026 to 30970396 370 CpG island CpG island 15695
Slc5a6 5 31036036 to 31048924 12888 - protein coding gene solute carrier family 5 (sodium-dependent vitamin transporter), member 6
Tssr50519 5 31038262 to 31038276 14 - TSS region transcription start site region 50519
D5Jcs306 5 31046083 to 31046276 193 DNA segment DNA segment, Chr 5, John C. Schimenti 306
Cpgi15696 5 31047735 to 31048883 1148 CpG island CpG island 15696
Tssr50520 5 31047858 to 31047867 9 - TSS region transcription start site region 50520
Tssr50521 5 31047879 to 31047886 7 - TSS region transcription start site region 50521
Tssr50522 5 31047998 to 31048009 11 - TSS region transcription start site region 50522
Tssr50523 5 31048014 to 31048038 24 - TSS region transcription start site region 50523
Tssr50524 5 31048236 to 31048276 40 - TSS region transcription start site region 50524
Tssr45658 5 31048627 to 31048673 46 + TSS region transcription start site region 45658
Atraid 5 31048640 to 31054633 5993 + protein coding gene all-trans retinoic acid induced differentiation factor
Tssr45659 5 31049029 to 31049034 5 + TSS region transcription start site region 45659
Cpgi15697 5 31054392 to 31055513 1121 CpG island CpG island 15697
Tssr45660 5 31054766 to 31054809 43 + TSS region transcription start site region 45660
Cad 5 31054780 to 31078479 23699 + protein coding gene carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
Tssr45661 5 31054821 to 31054865 44 + TSS region transcription start site region 45661
Tssr45662 5 31056526 to 31056542 16 + TSS region transcription start site region 45662
Tssr45663 5 31074804 to 31074811 7 + TSS region transcription start site region 45663
Tssr45664 5 31074822 to 31074833 11 + TSS region transcription start site region 45664
Tssr45665 5 31074845 to 31074883 38 + TSS region transcription start site region 45665
Tssr45666 5 31077004 to 31077011 7 + TSS region transcription start site region 45666
Tssr45667 5 31077040 to 31077047 7 + TSS region transcription start site region 45667
Tssr45668 5 31077064 to 31077075 11 + TSS region transcription start site region 45668
Tssr45669 5 31077081 to 31077093 12 + TSS region transcription start site region 45669
Tssr45670 5 31077104 to 31077108 4 + TSS region transcription start site region 45670
Tssr45671 5 31077113 to 31077128 15 + TSS region transcription start site region 45671
Tssr45672 5 31077177 to 31077186 9 + TSS region transcription start site region 45672
Tssr45673 5 31077472 to 31077482 10 + TSS region transcription start site region 45673
Tssr45674 5 31077505 to 31077510 5 + TSS region transcription start site region 45674
Tssr45675 5 31077599 to 31077608 9 + TSS region transcription start site region 45675
Tssr45676 5 31077772 to 31077810 38 + TSS region transcription start site region 45676
Gm38601 5 31080433 to 31083851 3418 - lncRNA gene predicted gene, 38601
Slc30a3 5 31086106 to 31108237 22131 - protein coding gene solute carrier family 30 (zinc transporter), member 3
Cpgi15698 5 31092042 to 31093719 1677 CpG island CpG island 15698
Tssr50525 5 31093473 to 31093499 26 - TSS region transcription start site region 50525
Tssr50526 5 31093500 to 31093526 26 - TSS region transcription start site region 50526
Cpgi15699 5 31094031 to 31095729 1698 CpG island CpG island 15699
Gm9924 5 31094984 to 31097294 2310 + unclassified gene predicted gene 9924
Tssr50527 5 31108225 to 31108237 12 - TSS region transcription start site region 50527
Dnajc5g 5 31108291 to 31112526 4235 + protein coding gene DnaJ heat shock protein family (Hsp40) member C5 gamma
Tssr45677 5 31108307 to 31108341 34 + TSS region transcription start site region 45677
Tssr45678 5 31116568 to 31116581 13 + TSS region transcription start site region 45678
Tssr45679 5 31116582 to 31116587 5 + TSS region transcription start site region 45679
Tssr45680 5 31116602 to 31116618 16 + TSS region transcription start site region 45680
Tssr45681 5 31116681 to 31116690 9 + TSS region transcription start site region 45681
Tssr45682 5 31116702 to 31116713 11 + TSS region transcription start site region 45682
Trim54 5 31116712 to 31137630 20918 + protein coding gene tripartite motif-containing 54
Tssr45683 5 31116722 to 31116727 5 + TSS region transcription start site region 45683
Gm40273 5 31118410 to 31119423 1013 - lncRNA gene predicted gene, 40273
Gm15469 5 31135753 to 31137344 1591 - antisense lncRNA gene predicted gene 15469
Cpgi15700 5 31136078 to 31136282 204 CpG island CpG island 15700
Cpgi15701 5 31136775 to 31139017 2242 CpG island CpG island 15701
Ucn 5 31138063 to 31138829 766 - protein coding gene urocortin
Tssr50528 5 31138875 to 31138887 12 - TSS region transcription start site region 50528
Mpv17 5 31140663 to 31154251 13588 - protein coding gene MpV17 mitochondrial inner membrane protein
Gm29609 5 31144739 to 31179911 35172 - protein coding gene predicted gene 29609
Cpgi15702 5 31154101 to 31154475 374 CpG island CpG island 15702
Tssr50529 5 31154205 to 31154253 48 - TSS region transcription start site region 50529
Tssr45684 5 31154254 to 31154280 26 + TSS region transcription start site region 45684
Gtf3c2 5 31156006 to 31180144 24138 - protein coding gene general transcription factor IIIC, polypeptide 2, beta
Tssr50530 5 31174017 to 31174030 13 - TSS region transcription start site region 50530
Cpgi15703 5 31179294 to 31180511 1217 CpG island CpG island 15703
Tssr50531 5 31179901 to 31179942 41 - TSS region transcription start site region 50531
Tssr50532 5 31180110 to 31180158 48 - TSS region transcription start site region 50532
Tssr45685 5 31180182 to 31180210 28 + TSS region transcription start site region 45685
Eif2b4 5 31187558 to 31193139 5581 - protein coding gene eukaryotic translation initiation factor 2B, subunit 4 delta
Cpgi15704 5 31192518 to 31194097 1579 CpG island CpG island 15704
Tssr50533 5 31192698 to 31192758 60 - TSS region transcription start site region 50533
Tssr50534 5 31193021 to 31193052 31 - TSS region transcription start site region 50534
Tssr50535 5 31193055 to 31193075 20 - TSS region transcription start site region 50535
Tssr50536 5 31193076 to 31193090 14 - TSS region transcription start site region 50536
Tssr50537 5 31193105 to 31193134 29 - TSS region transcription start site region 50537
Tssr45686 5 31193222 to 31193235 13 + TSS region transcription start site region 45686
Tssr45687 5 31193263 to 31193318 55 + TSS region transcription start site region 45687
Snx17 5 31193304 to 31198900 5596 + protein coding gene sorting nexin 17
Tssr45688 5 31195587 to 31195592 5 + TSS region transcription start site region 45688
Tssr45689 5 31196711 to 31196718 7 + TSS region transcription start site region 45689
Zfp513 5 31198981 to 31202303 3322 - protein coding gene zinc finger protein 513
Cpgi15705 5 31200337 to 31200566 229 CpG island CpG island 15705
Gm46908 5 31201776 to 31202798 1022 + lncRNA gene predicted gene, 46908
Cpgi15706 5 31201812 to 31202617 805 CpG island CpG island 15706
Tssr50538 5 31201932 to 31201948 16 - TSS region transcription start site region 50538
Tssr50539 5 31202230 to 31202329 99 - TSS region transcription start site region 50539
Tssr45690 5 31202466 to 31202506 40 + TSS region transcription start site region 45690
Ppm1g 5 31202668 to 31220545 17877 - protein coding gene protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform
Tssr45691 5 31203251 to 31203272 21 + TSS region transcription start site region 45691
Tssr45692 5 31205046 to 31205094 48 + TSS region transcription start site region 45692
Gm42798 5 31210344 to 31214315 3971 - unclassified gene predicted gene 42798
Tssr50540 5 31219264 to 31219267 3 - TSS region transcription start site region 50540
Cpgi15707 5 31219913 to 31221252 1339 CpG island CpG island 15707
Tssr50541 5 31220491 to 31220627 136 - TSS region transcription start site region 50541
Tssr45693 5 31220748 to 31220795 47 + TSS region transcription start site region 45693
D5Jcs307 5 31226539 to 31226787 248 DNA segment DNA segment, Chr 5, John C. Schimenti 307
Cpgi15708 5 31240627 to 31241887 1260 CpG island CpG island 15708
Gm9970 5 31240675 to 31241232 557 - protein coding gene predicted gene 9970
Nrbp1 5 31240883 to 31251566 10683 + protein coding gene nuclear receptor binding protein 1
Tssr45694 5 31240886 to 31240941 55 + TSS region transcription start site region 45694
Tssr45695 5 31240948 to 31240959 11 + TSS region transcription start site region 45695
Tssr50542 5 31241215 to 31241243 28 - TSS region transcription start site region 50542
Tssr45696 5 31242624 to 31242628 4 + TSS region transcription start site region 45696
Gm46909 5 31250672 to 31251999 1327 - lncRNA gene predicted gene, 46909
Cpgi15709 5 31251316 to 31252370 1054 CpG island CpG island 15709
Tssr45697 5 31251678 to 31251728 50 + TSS region transcription start site region 45697
Krtcap3 5 31251706 to 31253197 1491 + protein coding gene keratinocyte associated protein 3
Tssr45698 5 31251743 to 31251758 15 + TSS region transcription start site region 45698
Tssr45699 5 31251911 to 31251922 11 + TSS region transcription start site region 45699
Ift172 5 31253279 to 31291114 37835 - protein coding gene intraflagellar transport 172
Tssr50543 5 31254565 to 31254626 61 - TSS region transcription start site region 50543
Tssr50544 5 31254685 to 31254722 37 - TSS region transcription start site region 50544
Cpgi15710 5 31290824 to 31291482 658 CpG island CpG island 15710
Tssr50545 5 31291013 to 31291024 11 - TSS region transcription start site region 50545
Tssr50546 5 31291026 to 31291143 117 - TSS region transcription start site region 50546
Tssr45700 5 31291228 to 31291242 14 + TSS region transcription start site region 45700
Tssr45701 5 31291352 to 31291365 13 + TSS region transcription start site region 45701
Fndc4 5 31292245 to 31295956 3711 - protein coding gene fibronectin type III domain containing 4