Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:30698266-30898326

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15684 5 30711174 to 30713793 2619 CpG island CpG island 15684
Dpysl5 5 30711569 to 30799369 87800 + protein coding gene dihydropyrimidinase-like 5
Tssr45608 5 30711577 to 30711586 9 + TSS region transcription start site region 45608
Tssr45609 5 30711590 to 30711597 7 + TSS region transcription start site region 45609
Tssr45610 5 30711602 to 30711612 10 + TSS region transcription start site region 45610
Tssr45611 5 30711849 to 30711905 56 + TSS region transcription start site region 45611
D5Jcs303 5 30730444 to 30730596 152 DNA segment DNA segment, Chr 5, John C. Schimenti 303
Tssr45612 5 30746110 to 30746116 6 + TSS region transcription start site region 45612
Gm42764 5 30759032 to 30760477 1445 + sense intronic lncRNA gene predicted gene 42764
Cpgi15685 5 30774973 to 30775264 291 CpG island CpG island 15685
Tssr45613 5 30778099 to 30778121 22 + TSS region transcription start site region 45613
Tssr45614 5 30778862 to 30778888 26 + TSS region transcription start site region 45614
Tssr45615 5 30796887 to 30796914 27 + TSS region transcription start site region 45615
Tssr45616 5 30797187 to 30797205 18 + TSS region transcription start site region 45616
Tssr45617 5 30797528 to 30797540 12 + TSS region transcription start site region 45617
Tssr45618 5 30797892 to 30797899 7 + TSS region transcription start site region 45618
Tssr45619 5 30798070 to 30798087 17 + TSS region transcription start site region 45619
Tssr45620 5 30798266 to 30798326 60 + TSS region transcription start site region 45620
Tssr45621 5 30798573 to 30798623 50 + TSS region transcription start site region 45621
Gm46907 5 30799235 to 30814589 15354 - lncRNA gene predicted gene, 46907
D5Dcr40 5 30805178 to 30805277 99 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 40
Cpgi15686 5 30814366 to 30815383 1017 CpG island CpG island 15686
Tssr45622 5 30814571 to 30814617 46 + TSS region transcription start site region 45622
Mapre3 5 30814641 to 30866106 51465 + protein coding gene microtubule-associated protein, RP/EB family, member 3
Tssr50500 5 30814645 to 30814655 10 - TSS region transcription start site region 50500
Tssr45623 5 30814722 to 30814776 54 + TSS region transcription start site region 45623
Tssr45624 5 30814784 to 30814800 16 + TSS region transcription start site region 45624
Tssr45625 5 30815049 to 30815060 11 + TSS region transcription start site region 45625
Gm19409 5 30815620 to 30818477 2857 + sense intronic lncRNA gene predicted gene, 19409
Gm15461 5 30817977 to 30822612 4635 - antisense lncRNA gene predicted gene 15461
Tssr50501 5 30822919 to 30822946 27 - TSS region transcription start site region 50501
Tssr45626 5 30853788 to 30853794 6 + TSS region transcription start site region 45626
Tssr45627 5 30853796 to 30853801 5 + TSS region transcription start site region 45627
Tssr45628 5 30853808 to 30853848 40 + TSS region transcription start site region 45628
Gm43808 5 30868764 to 30870828 2064 - unclassified gene predicted gene 43808
Cpgi15687 5 30869171 to 30870105 934 CpG island CpG island 15687
Tssr45629 5 30869577 to 30869580 3 + TSS region transcription start site region 45629
Tssr45630 5 30869598 to 30869620 22 + TSS region transcription start site region 45630
Tssr45631 5 30869623 to 30869664 41 + TSS region transcription start site region 45631
Tmem214 5 30869647 to 30877469 7822 + protein coding gene transmembrane protein 214
Tssr45632 5 30873066 to 30873100 34 + TSS region transcription start site region 45632
Gm35795 5 30886165 to 30888890 2725 - lncRNA gene predicted gene, 35795
Cpgi15688 5 30887493 to 30888140 647 CpG island CpG island 15688
Tssr45633 5 30887518 to 30887531 13 + TSS region transcription start site region 45633
Tssr45634 5 30887608 to 30887612 4 + TSS region transcription start site region 45634
n-TYgta9 5 30888083 to 30888171 88 + tRNA gene nuclear encoded tRNA tyrosine 9 (anticodon GTA)
Agbl5 5 30888492 to 30906666 18174 + protein coding gene ATP/GTP binding protein-like 5
n-TAagc15 5 30888515 to 30888587 72 + tRNA gene nuclear encoded tRNA alanine 15 (anticodon AGC)
Cpgi15689 5 30888566 to 30889612 1046 CpG island CpG island 15689
Tssr50502 5 30888786 to 30888796 10 - TSS region transcription start site region 50502
Tssr45635 5 30888927 to 30888997 70 + TSS region transcription start site region 45635
Tssr45636 5 30889151 to 30889192 41 + TSS region transcription start site region 45636
Tssr45637 5 30889296 to 30889320 24 + TSS region transcription start site region 45637
Tssr45638 5 30889328 to 30889406 78 + TSS region transcription start site region 45638
Tssr45639 5 30889413 to 30889425 12 + TSS region transcription start site region 45639
5930420M18Rik 5 30897300 to 30899580 2280 + unclassified gene RIKEN cDNA 5930420M18 gene