MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 5:30543987-30618619

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Cib4	5	30485583 to 30545836	60253	-	protein coding gene	calcium and integrin binding family member 4
Tssr50493	5	30545810 to 30545822	12	-	TSS region	transcription start site region 50493
Tssr50494	5	30545836 to 30545852	16	-	TSS region	transcription start site region 50494
Gm40272	5	30546249 to 30552754	6505	+	lncRNA gene	predicted gene, 40272
Gm9899	5	30573987 to 30588619	14632	-	lncRNA gene	predicted gene 9899
Tssr45584	5	30587393 to 30587406	13	+	TSS region	transcription start site region 45584
Cpgi15680	5	30587477 to 30589232	1755		CpG island	CpG island 15680
Tssr45585	5	30588040 to 30588051	11	+	TSS region	transcription start site region 45585
Tssr45586	5	30588078 to 30588171	93	+	TSS region	transcription start site region 45586
Kcnk3	5	30588170 to 30625270	37100	+	protein coding gene	potassium channel, subfamily K, member 3
Tssr45587	5	30588174 to 30588185	11	+	TSS region	transcription start site region 45587
Tssr45588	5	30588190 to 30588220	30	+	TSS region	transcription start site region 45588
Tssr50495	5	30588466 to 30588479	13	-	TSS region	transcription start site region 50495
Tssr50496	5	30588738 to 30588751	13	-	TSS region	transcription start site region 50496
Tssr50497	5	30588760 to 30588775	15	-	TSS region	transcription start site region 50497
Tssr45589	5	30590056 to 30590069	13	+	TSS region	transcription start site region 45589
D5Jcs302	5	30592069 to 30592268	199		DNA segment	DNA segment, Chr 5, John C. Schimenti 302
Tssr45590	5	30596006 to 30596024	18	+	TSS region	transcription start site region 45590