Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:30446890-30886963

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5D5Mit348-D5Mit389)6Jcs 5 24919119 to 30647294 5728175 complex/cluster/region deletion, Chr 5, John C. Schimenti 6
Otof 5 30367062 to 30461932 94870 - protein coding gene otoferlin
Tssr1444 5 30461839 to 30461861 22 - TSS region transcription start site region 1444
Tssr50492 5 30461909 to 30461942 33 - TSS region transcription start site region 50492
Tssr1445 5 30461952 to 30461969 17 - TSS region transcription start site region 1445
Cpgi15679 5 30465928 to 30466288 360 CpG island CpG island 15679
Tssr45583 5 30466044 to 30466092 48 + TSS region transcription start site region 45583
1700001C02Rik 5 30466047 to 30484088 18041 + protein coding gene RIKEN cDNA 1700001C02 gene
D5Jcs301 5 30471729 to 30471960 231 DNA segment DNA segment, Chr 5, John C. Schimenti 301
D5Dcr37 5 30471842 to 30471938 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 37
Cib4 5 30485583 to 30545836 60253 - protein coding gene calcium and integrin binding family member 4
Gm25666 5 30514578 to 30514684 106 - snRNA gene predicted gene, 25666
Gm42765 5 30529457 to 30543830 14373 + antisense lncRNA gene predicted gene 42765
Tssr50493 5 30545810 to 30545822 12 - TSS region transcription start site region 50493
Tssr50494 5 30545836 to 30545852 16 - TSS region transcription start site region 50494
Gm40272 5 30546249 to 30552754 6505 + lncRNA gene predicted gene, 40272
Gm9899 5 30573987 to 30588619 14632 - lncRNA gene predicted gene 9899
Tssr45584 5 30587393 to 30587406 13 + TSS region transcription start site region 45584
Cpgi15680 5 30587477 to 30589232 1755 CpG island CpG island 15680
Tssr45585 5 30588040 to 30588051 11 + TSS region transcription start site region 45585
Tssr45586 5 30588078 to 30588171 93 + TSS region transcription start site region 45586
Kcnk3 5 30588170 to 30625270 37100 + protein coding gene potassium channel, subfamily K, member 3
Tssr45587 5 30588174 to 30588185 11 + TSS region transcription start site region 45587
Tssr45588 5 30588190 to 30588220 30 + TSS region transcription start site region 45588
Tssr50495 5 30588466 to 30588479 13 - TSS region transcription start site region 50495
Tssr50496 5 30588738 to 30588751 13 - TSS region transcription start site region 50496
Tssr50497 5 30588760 to 30588775 15 - TSS region transcription start site region 50497
Tssr45589 5 30590056 to 30590069 13 + TSS region transcription start site region 45589
D5Jcs302 5 30592069 to 30592268 199 DNA segment DNA segment, Chr 5, John C. Schimenti 302
Tssr45590 5 30596006 to 30596024 18 + TSS region transcription start site region 45590
Cpgi15681 5 30621828 to 30623015 1187 CpG island CpG island 15681
Tssr45591 5 30622040 to 30622055 15 + TSS region transcription start site region 45591
Tssr45592 5 30622453 to 30622467 14 + TSS region transcription start site region 45592
Tssr45593 5 30622504 to 30622527 23 + TSS region transcription start site region 45593
Tssr45594 5 30622693 to 30622704 11 + TSS region transcription start site region 45594
Tssr45595 5 30622943 to 30622954 11 + TSS region transcription start site region 45595
Tssr45596 5 30623161 to 30623183 22 + TSS region transcription start site region 45596
Tssr45597 5 30623193 to 30623206 13 + TSS region transcription start site region 45597
Tssr45598 5 30623283 to 30623309 26 + TSS region transcription start site region 45598
Tssr50498 5 30623475 to 30623485 10 - TSS region transcription start site region 50498
Tssr45599 5 30623494 to 30623531 37 + TSS region transcription start site region 45599
Tssr45600 5 30623837 to 30623844 7 + TSS region transcription start site region 45600
Tssr50499 5 30625466 to 30625506 40 - TSS region transcription start site region 50499
Tssr45601 5 30628029 to 30628043 14 + TSS region transcription start site region 45601
Tssr45602 5 30628056 to 30628063 7 + TSS region transcription start site region 45602
D5Dcr38 5 30635698 to 30635793 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 38
D5Jcs66 5 30636181 to 30636338 157 DNA segment DNA segment, Chr 5, John C. Schimenti 66
D5Mit389 5 30647188 to 30647294 106 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 389
Cpgi15682 5 30647733 to 30648369 636 CpG island CpG island 15682
Tssr45603 5 30647921 to 30647932 11 + TSS region transcription start site region 45603
Tssr45604 5 30647935 to 30647998 63 + TSS region transcription start site region 45604
Mir5625 5 30647936 to 30648015 79 + miRNA gene microRNA 5625
Slc35f6 5 30647939 to 30659729 11790 + protein coding gene solute carrier family 35, member F6
Tssr45605 5 30648005 to 30648029 24 + TSS region transcription start site region 45605
Cpgi15683 5 30666808 to 30667351 543 CpG island CpG island 15683
Cenpa 5 30666886 to 30674837 7951 + protein coding gene centromere protein A
Tssr45606 5 30666890 to 30666963 73 + TSS region transcription start site region 45606
Tssr45607 5 30674158 to 30674173 15 + TSS region transcription start site region 45607
Gm18389 5 30687601 to 30688167 566 + pseudogene predicted gene, 18389
Cpgi15684 5 30711174 to 30713793 2619 CpG island CpG island 15684
Dpysl5 5 30711569 to 30799369 87800 + protein coding gene dihydropyrimidinase-like 5
Tssr45608 5 30711577 to 30711586 9 + TSS region transcription start site region 45608
Tssr45609 5 30711590 to 30711597 7 + TSS region transcription start site region 45609
Tssr45610 5 30711602 to 30711612 10 + TSS region transcription start site region 45610
Tssr45611 5 30711849 to 30711905 56 + TSS region transcription start site region 45611
D5Jcs303 5 30730444 to 30730596 152 DNA segment DNA segment, Chr 5, John C. Schimenti 303
Tssr45612 5 30746110 to 30746116 6 + TSS region transcription start site region 45612
Gm42764 5 30759032 to 30760477 1445 + sense intronic lncRNA gene predicted gene 42764
Cpgi15685 5 30774973 to 30775264 291 CpG island CpG island 15685
Tssr45613 5 30778099 to 30778121 22 + TSS region transcription start site region 45613
Tssr45614 5 30778862 to 30778888 26 + TSS region transcription start site region 45614
Tssr45615 5 30796887 to 30796914 27 + TSS region transcription start site region 45615
Tssr45616 5 30797187 to 30797205 18 + TSS region transcription start site region 45616
Tssr45617 5 30797528 to 30797540 12 + TSS region transcription start site region 45617
Tssr45618 5 30797892 to 30797899 7 + TSS region transcription start site region 45618
Tssr45619 5 30798070 to 30798087 17 + TSS region transcription start site region 45619
Tssr45620 5 30798266 to 30798326 60 + TSS region transcription start site region 45620
Tssr45621 5 30798573 to 30798623 50 + TSS region transcription start site region 45621
Gm46907 5 30799235 to 30814589 15354 - lncRNA gene predicted gene, 46907
D5Dcr40 5 30805178 to 30805277 99 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 40
Cpgi15686 5 30814366 to 30815383 1017 CpG island CpG island 15686
Tssr45622 5 30814571 to 30814617 46 + TSS region transcription start site region 45622
Mapre3 5 30814641 to 30866106 51465 + protein coding gene microtubule-associated protein, RP/EB family, member 3
Tssr50500 5 30814645 to 30814655 10 - TSS region transcription start site region 50500
Tssr45623 5 30814722 to 30814776 54 + TSS region transcription start site region 45623
Tssr45624 5 30814784 to 30814800 16 + TSS region transcription start site region 45624
Tssr45625 5 30815049 to 30815060 11 + TSS region transcription start site region 45625
Gm19409 5 30815620 to 30818477 2857 + sense intronic lncRNA gene predicted gene, 19409
Gm15461 5 30817977 to 30822612 4635 - antisense lncRNA gene predicted gene 15461
Tssr50501 5 30822919 to 30822946 27 - TSS region transcription start site region 50501
Tssr45626 5 30853788 to 30853794 6 + TSS region transcription start site region 45626
Tssr45627 5 30853796 to 30853801 5 + TSS region transcription start site region 45627
Tssr45628 5 30853808 to 30853848 40 + TSS region transcription start site region 45628
Gm43808 5 30868764 to 30870828 2064 - unclassified gene predicted gene 43808
Cpgi15687 5 30869171 to 30870105 934 CpG island CpG island 15687
Tssr45629 5 30869577 to 30869580 3 + TSS region transcription start site region 45629
Tssr45630 5 30869598 to 30869620 22 + TSS region transcription start site region 45630
Tssr45631 5 30869623 to 30869664 41 + TSS region transcription start site region 45631
Tmem214 5 30869647 to 30877469 7822 + protein coding gene transmembrane protein 214
Tssr45632 5 30873066 to 30873100 34 + TSS region transcription start site region 45632
Gm35795 5 30886165 to 30888890 2725 - lncRNA gene predicted gene, 35795