Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:30335928-30596288

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Drc1 5 30281388 to 30366695 85307 + protein coding gene dynein regulatory complex subunit 1
Cpgi15678 5 30342779 to 30342938 159 CpG island CpG island 15678
Tssr50488 5 30355228 to 30355275 47 - TSS region transcription start site region 50488
Gm43755 5 30366046 to 30366490 444 + sense intronic lncRNA gene predicted gene 43755
Otof 5 30367062 to 30461932 94870 - protein coding gene otoferlin
D5Jcs300 5 30406323 to 30406473 150 DNA segment DNA segment, Chr 5, John C. Schimenti 300
Tssr50489 5 30408030 to 30408033 3 - TSS region transcription start site region 50489
Tssr50490 5 30408043 to 30408067 24 - TSS region transcription start site region 50490
Tssr50491 5 30408082 to 30408091 9 - TSS region transcription start site region 50491
Tssr1444 5 30461839 to 30461861 22 - TSS region transcription start site region 1444
Tssr50492 5 30461909 to 30461942 33 - TSS region transcription start site region 50492
Tssr1445 5 30461952 to 30461969 17 - TSS region transcription start site region 1445
Cpgi15679 5 30465928 to 30466288 360 CpG island CpG island 15679
Tssr45583 5 30466044 to 30466092 48 + TSS region transcription start site region 45583
1700001C02Rik 5 30466047 to 30484088 18041 + protein coding gene RIKEN cDNA 1700001C02 gene
D5Jcs301 5 30471729 to 30471960 231 DNA segment DNA segment, Chr 5, John C. Schimenti 301
D5Dcr37 5 30471842 to 30471938 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 37
Cib4 5 30485583 to 30545836 60253 - protein coding gene calcium and integrin binding family member 4
Gm25666 5 30514578 to 30514684 106 - snRNA gene predicted gene, 25666
Gm42765 5 30529457 to 30543830 14373 + antisense lncRNA gene predicted gene 42765
Tssr50493 5 30545810 to 30545822 12 - TSS region transcription start site region 50493
Tssr50494 5 30545836 to 30545852 16 - TSS region transcription start site region 50494
Gm40272 5 30546249 to 30552754 6505 + lncRNA gene predicted gene, 40272
Gm9899 5 30573987 to 30588619 14632 - lncRNA gene predicted gene 9899
Tssr45584 5 30587393 to 30587406 13 + TSS region transcription start site region 45584
Cpgi15680 5 30587477 to 30589232 1755 CpG island CpG island 15680
Tssr45585 5 30588040 to 30588051 11 + TSS region transcription start site region 45585
Tssr45586 5 30588078 to 30588171 93 + TSS region transcription start site region 45586
Kcnk3 5 30588170 to 30625270 37100 + protein coding gene potassium channel, subfamily K, member 3
Tssr45587 5 30588174 to 30588185 11 + TSS region transcription start site region 45587
Tssr45588 5 30588190 to 30588220 30 + TSS region transcription start site region 45588
Tssr50495 5 30588466 to 30588479 13 - TSS region transcription start site region 50495
Tssr50496 5 30588738 to 30588751 13 - TSS region transcription start site region 50496
Tssr50497 5 30588760 to 30588775 15 - TSS region transcription start site region 50497
Tssr45589 5 30590056 to 30590069 13 + TSS region transcription start site region 45589
D5Jcs302 5 30592069 to 30592268 199 DNA segment DNA segment, Chr 5, John C. Schimenti 302
Tssr45590 5 30596006 to 30596024 18 + TSS region transcription start site region 45590