Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:30279158-31069173

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193 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5D5Mit348-D5Mit389)6Jcs 5 24919119 to 30647294 5728175 complex/cluster/region deletion, Chr 5, John C. Schimenti 6
Cpgi15677 5 30281299 to 30281666 367 CpG island CpG island 15677
Tssr45582 5 30281377 to 30281447 70 + TSS region transcription start site region 45582
Drc1 5 30281388 to 30366695 85307 + protein coding gene dynein regulatory complex subunit 1
Cpgi15678 5 30342779 to 30342938 159 CpG island CpG island 15678
Tssr50488 5 30355228 to 30355275 47 - TSS region transcription start site region 50488
Gm43755 5 30366046 to 30366490 444 + sense intronic lncRNA gene predicted gene 43755
Otof 5 30367062 to 30461932 94870 - protein coding gene otoferlin
D5Jcs300 5 30406323 to 30406473 150 DNA segment DNA segment, Chr 5, John C. Schimenti 300
Tssr50489 5 30408030 to 30408033 3 - TSS region transcription start site region 50489
Tssr50490 5 30408043 to 30408067 24 - TSS region transcription start site region 50490
Tssr50491 5 30408082 to 30408091 9 - TSS region transcription start site region 50491
Tssr1444 5 30461839 to 30461861 22 - TSS region transcription start site region 1444
Tssr50492 5 30461909 to 30461942 33 - TSS region transcription start site region 50492
Tssr1445 5 30461952 to 30461969 17 - TSS region transcription start site region 1445
Cpgi15679 5 30465928 to 30466288 360 CpG island CpG island 15679
Tssr45583 5 30466044 to 30466092 48 + TSS region transcription start site region 45583
1700001C02Rik 5 30466047 to 30484088 18041 + protein coding gene RIKEN cDNA 1700001C02 gene
D5Jcs301 5 30471729 to 30471960 231 DNA segment DNA segment, Chr 5, John C. Schimenti 301
D5Dcr37 5 30471842 to 30471938 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 37
Cib4 5 30485583 to 30545836 60253 - protein coding gene calcium and integrin binding family member 4
Gm25666 5 30514578 to 30514684 106 - snRNA gene predicted gene, 25666
Gm42765 5 30529457 to 30543830 14373 + antisense lncRNA gene predicted gene 42765
Tssr50493 5 30545810 to 30545822 12 - TSS region transcription start site region 50493
Tssr50494 5 30545836 to 30545852 16 - TSS region transcription start site region 50494
Gm40272 5 30546249 to 30552754 6505 + lncRNA gene predicted gene, 40272
Gm9899 5 30573987 to 30588619 14632 - lncRNA gene predicted gene 9899
Tssr45584 5 30587393 to 30587406 13 + TSS region transcription start site region 45584
Cpgi15680 5 30587477 to 30589232 1755 CpG island CpG island 15680
Tssr45585 5 30588040 to 30588051 11 + TSS region transcription start site region 45585
Tssr45586 5 30588078 to 30588171 93 + TSS region transcription start site region 45586
Kcnk3 5 30588170 to 30625270 37100 + protein coding gene potassium channel, subfamily K, member 3
Tssr45587 5 30588174 to 30588185 11 + TSS region transcription start site region 45587
Tssr45588 5 30588190 to 30588220 30 + TSS region transcription start site region 45588
Tssr50495 5 30588466 to 30588479 13 - TSS region transcription start site region 50495
Tssr50496 5 30588738 to 30588751 13 - TSS region transcription start site region 50496
Tssr50497 5 30588760 to 30588775 15 - TSS region transcription start site region 50497
Tssr45589 5 30590056 to 30590069 13 + TSS region transcription start site region 45589
D5Jcs302 5 30592069 to 30592268 199 DNA segment DNA segment, Chr 5, John C. Schimenti 302
Tssr45590 5 30596006 to 30596024 18 + TSS region transcription start site region 45590
Cpgi15681 5 30621828 to 30623015 1187 CpG island CpG island 15681
Tssr45591 5 30622040 to 30622055 15 + TSS region transcription start site region 45591
Tssr45592 5 30622453 to 30622467 14 + TSS region transcription start site region 45592
Tssr45593 5 30622504 to 30622527 23 + TSS region transcription start site region 45593
Tssr45594 5 30622693 to 30622704 11 + TSS region transcription start site region 45594
Tssr45595 5 30622943 to 30622954 11 + TSS region transcription start site region 45595
Tssr45596 5 30623161 to 30623183 22 + TSS region transcription start site region 45596
Tssr45597 5 30623193 to 30623206 13 + TSS region transcription start site region 45597
Tssr45598 5 30623283 to 30623309 26 + TSS region transcription start site region 45598
Tssr50498 5 30623475 to 30623485 10 - TSS region transcription start site region 50498
Tssr45599 5 30623494 to 30623531 37 + TSS region transcription start site region 45599
Tssr45600 5 30623837 to 30623844 7 + TSS region transcription start site region 45600
Tssr50499 5 30625466 to 30625506 40 - TSS region transcription start site region 50499
Tssr45601 5 30628029 to 30628043 14 + TSS region transcription start site region 45601
Tssr45602 5 30628056 to 30628063 7 + TSS region transcription start site region 45602
D5Dcr38 5 30635698 to 30635793 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 38
D5Jcs66 5 30636181 to 30636338 157 DNA segment DNA segment, Chr 5, John C. Schimenti 66
D5Mit389 5 30647188 to 30647294 106 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 389
Cpgi15682 5 30647733 to 30648369 636 CpG island CpG island 15682
Tssr45603 5 30647921 to 30647932 11 + TSS region transcription start site region 45603
Tssr45604 5 30647935 to 30647998 63 + TSS region transcription start site region 45604
Mir5625 5 30647936 to 30648015 79 + miRNA gene microRNA 5625
Slc35f6 5 30647939 to 30659729 11790 + protein coding gene solute carrier family 35, member F6
Tssr45605 5 30648005 to 30648029 24 + TSS region transcription start site region 45605
Cpgi15683 5 30666808 to 30667351 543 CpG island CpG island 15683
Cenpa 5 30666886 to 30674837 7951 + protein coding gene centromere protein A
Tssr45606 5 30666890 to 30666963 73 + TSS region transcription start site region 45606
Tssr45607 5 30674158 to 30674173 15 + TSS region transcription start site region 45607
Gm18389 5 30687601 to 30688167 566 + pseudogene predicted gene, 18389
Cpgi15684 5 30711174 to 30713793 2619 CpG island CpG island 15684
Dpysl5 5 30711569 to 30799369 87800 + protein coding gene dihydropyrimidinase-like 5
Tssr45608 5 30711577 to 30711586 9 + TSS region transcription start site region 45608
Tssr45609 5 30711590 to 30711597 7 + TSS region transcription start site region 45609
Tssr45610 5 30711602 to 30711612 10 + TSS region transcription start site region 45610
Tssr45611 5 30711849 to 30711905 56 + TSS region transcription start site region 45611
D5Jcs303 5 30730444 to 30730596 152 DNA segment DNA segment, Chr 5, John C. Schimenti 303
Tssr45612 5 30746110 to 30746116 6 + TSS region transcription start site region 45612
Gm42764 5 30759032 to 30760477 1445 + sense intronic lncRNA gene predicted gene 42764
Cpgi15685 5 30774973 to 30775264 291 CpG island CpG island 15685
Tssr45613 5 30778099 to 30778121 22 + TSS region transcription start site region 45613
Tssr45614 5 30778862 to 30778888 26 + TSS region transcription start site region 45614
Tssr45615 5 30796887 to 30796914 27 + TSS region transcription start site region 45615
Tssr45616 5 30797187 to 30797205 18 + TSS region transcription start site region 45616
Tssr45617 5 30797528 to 30797540 12 + TSS region transcription start site region 45617
Tssr45618 5 30797892 to 30797899 7 + TSS region transcription start site region 45618
Tssr45619 5 30798070 to 30798087 17 + TSS region transcription start site region 45619
Tssr45620 5 30798266 to 30798326 60 + TSS region transcription start site region 45620
Tssr45621 5 30798573 to 30798623 50 + TSS region transcription start site region 45621
Gm46907 5 30799235 to 30814589 15354 - lncRNA gene predicted gene, 46907
D5Dcr40 5 30805178 to 30805277 99 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 40
Cpgi15686 5 30814366 to 30815383 1017 CpG island CpG island 15686
Tssr45622 5 30814571 to 30814617 46 + TSS region transcription start site region 45622
Mapre3 5 30814641 to 30866106 51465 + protein coding gene microtubule-associated protein, RP/EB family, member 3
Tssr50500 5 30814645 to 30814655 10 - TSS region transcription start site region 50500
Tssr45623 5 30814722 to 30814776 54 + TSS region transcription start site region 45623
Tssr45624 5 30814784 to 30814800 16 + TSS region transcription start site region 45624
Tssr45625 5 30815049 to 30815060 11 + TSS region transcription start site region 45625
Gm19409 5 30815620 to 30818477 2857 + sense intronic lncRNA gene predicted gene, 19409
Gm15461 5 30817977 to 30822612 4635 - antisense lncRNA gene predicted gene 15461
Tssr50501 5 30822919 to 30822946 27 - TSS region transcription start site region 50501
Tssr45626 5 30853788 to 30853794 6 + TSS region transcription start site region 45626
Tssr45627 5 30853796 to 30853801 5 + TSS region transcription start site region 45627
Tssr45628 5 30853808 to 30853848 40 + TSS region transcription start site region 45628
Gm43808 5 30868764 to 30870828 2064 - unclassified gene predicted gene 43808
Cpgi15687 5 30869171 to 30870105 934 CpG island CpG island 15687
Tssr45629 5 30869577 to 30869580 3 + TSS region transcription start site region 45629
Tssr45630 5 30869598 to 30869620 22 + TSS region transcription start site region 45630
Tssr45631 5 30869623 to 30869664 41 + TSS region transcription start site region 45631
Tmem214 5 30869647 to 30877469 7822 + protein coding gene transmembrane protein 214
Tssr45632 5 30873066 to 30873100 34 + TSS region transcription start site region 45632
Gm35795 5 30886165 to 30888890 2725 - lncRNA gene predicted gene, 35795
Cpgi15688 5 30887493 to 30888140 647 CpG island CpG island 15688
Tssr45633 5 30887518 to 30887531 13 + TSS region transcription start site region 45633
Tssr45634 5 30887608 to 30887612 4 + TSS region transcription start site region 45634
n-TYgta9 5 30888083 to 30888171 88 + tRNA gene nuclear encoded tRNA tyrosine 9 (anticodon GTA)
Agbl5 5 30888492 to 30906666 18174 + protein coding gene ATP/GTP binding protein-like 5
n-TAagc15 5 30888515 to 30888587 72 + tRNA gene nuclear encoded tRNA alanine 15 (anticodon AGC)
Cpgi15689 5 30888566 to 30889612 1046 CpG island CpG island 15689
Tssr50502 5 30888786 to 30888796 10 - TSS region transcription start site region 50502
Tssr45635 5 30888927 to 30888997 70 + TSS region transcription start site region 45635
Tssr45636 5 30889151 to 30889192 41 + TSS region transcription start site region 45636
Tssr45637 5 30889296 to 30889320 24 + TSS region transcription start site region 45637
Tssr45638 5 30889328 to 30889406 78 + TSS region transcription start site region 45638
Tssr45639 5 30889413 to 30889425 12 + TSS region transcription start site region 45639
5930420M18Rik 5 30897300 to 30899580 2280 + unclassified gene RIKEN cDNA 5930420M18 gene
Ost4 5 30906516 to 30907810 1294 - protein coding gene oligosaccharyltransferase complex subunit 4 (non-catalytic)
Cpgi15690 5 30907238 to 30908366 1128 CpG island CpG island 15690
Tssr50503 5 30907680 to 30907691 11 - TSS region transcription start site region 50503
Tssr50504 5 30907692 to 30907753 61 - TSS region transcription start site region 50504
Tssr45640 5 30907934 to 30907955 21 + TSS region transcription start site region 45640
Tssr45641 5 30913398 to 30913403 5 + TSS region transcription start site region 45641
Emilin1 5 30913402 to 30921277 7875 + protein coding gene elastin microfibril interfacer 1
Tssr45642 5 30913418 to 30913439 21 + TSS region transcription start site region 45642
Tssr45643 5 30913454 to 30913487 33 + TSS region transcription start site region 45643
Tssr45644 5 30913504 to 30913515 11 + TSS region transcription start site region 45644
Tssr45645 5 30913574 to 30913585 11 + TSS region transcription start site region 45645
Tssr45646 5 30913586 to 30913628 42 + TSS region transcription start site region 45646
Tssr45647 5 30913687 to 30913792 105 + TSS region transcription start site region 45647
Cpgi15691 5 30920680 to 30922084 1404 CpG island CpG island 15691
Khk 5 30921436 to 30931248 9812 + protein coding gene ketohexokinase
Tssr45648 5 30921524 to 30921550 26 + TSS region transcription start site region 45648
Tssr45649 5 30921567 to 30921583 16 + TSS region transcription start site region 45649
Tssr45650 5 30921825 to 30921866 41 + TSS region transcription start site region 45650
Tssr45651 5 30921867 to 30921896 29 + TSS region transcription start site region 45651
Cgref1 5 30933143 to 30945480 12337 - protein coding gene cell growth regulator with EF hand domain 1
Tssr50505 5 30933872 to 30933882 10 - TSS region transcription start site region 50505
D5Jcs305 5 30943423 to 30943579 156 DNA segment DNA segment, Chr 5, John C. Schimenti 305
Cpgi15692 5 30945135 to 30945753 618 CpG island CpG island 15692
Tssr50506 5 30945393 to 30945455 62 - TSS region transcription start site region 50506
Tssr1446 5 30945475 to 30945484 9 - TSS region transcription start site region 1446
Tssr50507 5 30945506 to 30945587 81 - TSS region transcription start site region 50507
Tssr50508 5 30945596 to 30945622 26 - TSS region transcription start site region 50508
Tssr50509 5 30945654 to 30945663 9 - TSS region transcription start site region 50509
Tssr50510 5 30945671 to 30945676 5 - TSS region transcription start site region 50510
Cpgi15693 5 30949748 to 30950206 458 CpG island CpG island 15693
Tssr50511 5 30949921 to 30949941 20 - TSS region transcription start site region 50511
Tssr45652 5 30950046 to 30950133 87 + TSS region transcription start site region 45652
Abhd1 5 30950066 to 30955091 5025 + protein coding gene abhydrolase domain containing 1
Tssr45653 5 30950135 to 30950147 12 + TSS region transcription start site region 45653
Preb 5 30951667 to 30960356 8689 - protein coding gene prolactin regulatory element binding
Tssr50512 5 30957977 to 30958000 23 - TSS region transcription start site region 50512
Cpgi15694 5 30959682 to 30960687 1005 CpG island CpG island 15694
Tssr50513 5 30960170 to 30960182 12 - TSS region transcription start site region 50513
Tssr50514 5 30960198 to 30960209 11 - TSS region transcription start site region 50514
Tssr50515 5 30960217 to 30960228 11 - TSS region transcription start site region 50515
Tssr1447 5 30960233 to 30960236 3 - TSS region transcription start site region 1447
Tssr50516 5 30960236 to 30960320 84 - TSS region transcription start site region 50516
Tssr50517 5 30960326 to 30960339 13 - TSS region transcription start site region 50517
Tssr1448 5 30960520 to 30960531 11 + TSS region transcription start site region 1448
Tssr50518 5 30961372 to 30961386 14 - TSS region transcription start site region 50518
Tssr45654 5 30968604 to 30968615 11 + TSS region transcription start site region 45654
Tssr45655 5 30968637 to 30968646 9 + TSS region transcription start site region 45655
Tssr45656 5 30968655 to 30968667 12 + TSS region transcription start site region 45656
Tcf23 5 30968662 to 30977018 8356 + protein coding gene transcription factor 23
Tssr45657 5 30969770 to 30969787 17 + TSS region transcription start site region 45657
Cpgi15695 5 30970026 to 30970396 370 CpG island CpG island 15695
Slc5a6 5 31036036 to 31048924 12888 - protein coding gene solute carrier family 5 (sodium-dependent vitamin transporter), member 6
Tssr50519 5 31038262 to 31038276 14 - TSS region transcription start site region 50519
D5Jcs306 5 31046083 to 31046276 193 DNA segment DNA segment, Chr 5, John C. Schimenti 306
Cpgi15696 5 31047735 to 31048883 1148 CpG island CpG island 15696
Tssr50520 5 31047858 to 31047867 9 - TSS region transcription start site region 50520
Tssr50521 5 31047879 to 31047886 7 - TSS region transcription start site region 50521
Tssr50522 5 31047998 to 31048009 11 - TSS region transcription start site region 50522
Tssr50523 5 31048014 to 31048038 24 - TSS region transcription start site region 50523
Tssr50524 5 31048236 to 31048276 40 - TSS region transcription start site region 50524
Tssr45658 5 31048627 to 31048673 46 + TSS region transcription start site region 45658
Atraid 5 31048640 to 31054633 5993 + protein coding gene all-trans retinoic acid induced differentiation factor
Tssr45659 5 31049029 to 31049034 5 + TSS region transcription start site region 45659
Cpgi15697 5 31054392 to 31055513 1121 CpG island CpG island 15697
Tssr45660 5 31054766 to 31054809 43 + TSS region transcription start site region 45660
Cad 5 31054780 to 31078479 23699 + protein coding gene carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
Tssr45661 5 31054821 to 31054865 44 + TSS region transcription start site region 45661
Tssr45662 5 31056526 to 31056542 16 + TSS region transcription start site region 45662