Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Del(5D5Mit348-D5Mit389)6Jcs | 5 | 5728175 | complex/cluster/region | deletion, Chr 5, John C. Schimenti 6 | ||
Hadha | 5 | 36676 | - | protein coding gene | hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit | |
Cpgi15675 | 5 | 1265 | CpG island | CpG island 15675 | ||
Tssr50482 | 5 | 30 | - | TSS region | transcription start site region 50482 | |
Tssr50483 | 5 | 11 | - | TSS region | transcription start site region 50483 | |
Tssr1442 | 5 | 11 | - | TSS region | transcription start site region 1442 | |
Tssr45572 | 5 | 68 | + | TSS region | transcription start site region 45572 | |
Hadhb | 5 | 29340 | + | protein coding gene | hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit | |
Tssr45573 | 5 | 21 | + | TSS region | transcription start site region 45573 | |
Tssr50484 | 5 | 47 | - | TSS region | transcription start site region 50484 | |
Tssr45574 | 5 | 4 | + | TSS region | transcription start site region 45574 | |
Tssr45575 | 5 | 8 | + | TSS region | transcription start site region 45575 | |
Tssr45576 | 5 | 7 | + | TSS region | transcription start site region 45576 | |
Tssr45577 | 5 | 20 | + | TSS region | transcription start site region 45577 | |
Tssr45578 | 5 | 4 | + | TSS region | transcription start site region 45578 | |
Mir1960 | 5 | 77 | + | miRNA gene | microRNA 1960 | |
Tssr1443 | 5 | 2 | + | TSS region | transcription start site region 1443 | |
Adgrf3 | 5 | 12291 | - | protein coding gene | adhesion G protein-coupled receptor F3 | |
D5Mit3 | 5 | 161 | DNA segment | DNA segment, Chr 5, Massachusetts Institute of Technology 3 | ||
Tssr50485 | 5 | 27 | - | TSS region | transcription start site region 50485 | |
D730001M18Rik | 5 | 676 | unclassified gene | RIKEN cDNA D730001M18 gene | ||
Cpgi15676 | 5 | 1024 | CpG island | CpG island 15676 | ||
Tssr50486 | 5 | 5 | - | TSS region | transcription start site region 50486 | |
Tssr50487 | 5 | 43 | - | TSS region | transcription start site region 50487 | |
Tssr45579 | 5 | 65 | + | TSS region | transcription start site region 45579 | |
Selenoi | 5 | 39812 | + | protein coding gene | selenoprotein I | |
Tssr45580 | 5 | 7 | + | TSS region | transcription start site region 45580 | |
Gm16288 | 5 | 366 | - | pseudogene | predicted gene 16288 | |
Tssr45581 | 5 | 12 | + | TSS region | transcription start site region 45581 | |
Cpgi15677 | 5 | 367 | CpG island | CpG island 15677 | ||
Tssr45582 | 5 | 70 | + | TSS region | transcription start site region 45582 | |
Drc1 | 5 | 85307 | + | protein coding gene | dynein regulatory complex subunit 1 | |
Cpgi15678 | 5 | 159 | CpG island | CpG island 15678 | ||
Tssr50488 | 5 | 47 | - | TSS region | transcription start site region 50488 | |
Gm43755 | 5 | 444 | + | sense intronic lncRNA gene | predicted gene 43755 | |
Otof | 5 | 94870 | - | protein coding gene | otoferlin | |
D5Jcs300 | 5 | 150 | DNA segment | DNA segment, Chr 5, John C. Schimenti 300 | ||
Tssr50489 | 5 | 3 | - | TSS region | transcription start site region 50489 | |
Tssr50490 | 5 | 24 | - | TSS region | transcription start site region 50490 | |
Tssr50491 | 5 | 9 | - | TSS region | transcription start site region 50491 | |
Tssr1444 | 5 | 22 | - | TSS region | transcription start site region 1444 | |
Tssr50492 | 5 | 33 | - | TSS region | transcription start site region 50492 | |
Tssr1445 | 5 | 17 | - | TSS region | transcription start site region 1445 | |
Cpgi15679 | 5 | 360 | CpG island | CpG island 15679 | ||
Tssr45583 | 5 | 48 | + | TSS region | transcription start site region 45583 | |
1700001C02Rik | 5 | 18041 | + | protein coding gene | RIKEN cDNA 1700001C02 gene | |
D5Jcs301 | 5 | 231 | DNA segment | DNA segment, Chr 5, John C. Schimenti 301 | ||
D5Dcr37 | 5 | 96 | DNA segment | DNA Segment, Chr 5, Derry C. Roopenian 37 | ||
Cib4 | 5 | 60253 | - | protein coding gene | calcium and integrin binding family member 4 | |
Gm25666 | 5 | 106 | - | snRNA gene | predicted gene, 25666 | |
Gm42765 | 5 | 14373 | + | antisense lncRNA gene | predicted gene 42765 | |
Tssr50493 | 5 | 12 | - | TSS region | transcription start site region 50493 | |
Tssr50494 | 5 | 16 | - | TSS region | transcription start site region 50494 | |
Gm40272 | 5 | 6505 | + | lncRNA gene | predicted gene, 40272 | |
Gm9899 | 5 | 14632 | - | lncRNA gene | predicted gene 9899 | |
Tssr45584 | 5 | 13 | + | TSS region | transcription start site region 45584 | |
Cpgi15680 | 5 | 1755 | CpG island | CpG island 15680 | ||
Tssr45585 | 5 | 11 | + | TSS region | transcription start site region 45585 | |
Tssr45586 | 5 | 93 | + | TSS region | transcription start site region 45586 | |
Kcnk3 | 5 | 37100 | + | protein coding gene | potassium channel, subfamily K, member 3 | |
Tssr45587 | 5 | 11 | + | TSS region | transcription start site region 45587 | |
Tssr45588 | 5 | 30 | + | TSS region | transcription start site region 45588 | |
Tssr50495 | 5 | 13 | - | TSS region | transcription start site region 50495 | |
Tssr50496 | 5 | 13 | - | TSS region | transcription start site region 50496 | |
Tssr50497 | 5 | 15 | - | TSS region | transcription start site region 50497 | |
Tssr45589 | 5 | 13 | + | TSS region | transcription start site region 45589 | |
D5Jcs302 | 5 | 199 | DNA segment | DNA segment, Chr 5, John C. Schimenti 302 | ||
Tssr45590 | 5 | 18 | + | TSS region | transcription start site region 45590 | |
Cpgi15681 | 5 | 1187 | CpG island | CpG island 15681 | ||
Tssr45591 | 5 | 15 | + | TSS region | transcription start site region 45591 | |
Tssr45592 | 5 | 14 | + | TSS region | transcription start site region 45592 | |
Tssr45593 | 5 | 23 | + | TSS region | transcription start site region 45593 | |
Tssr45594 | 5 | 11 | + | TSS region | transcription start site region 45594 | |
Tssr45595 | 5 | 11 | + | TSS region | transcription start site region 45595 | |
Tssr45596 | 5 | 22 | + | TSS region | transcription start site region 45596 | |
Tssr45597 | 5 | 13 | + | TSS region | transcription start site region 45597 | |
Tssr45598 | 5 | 26 | + | TSS region | transcription start site region 45598 | |
Tssr50498 | 5 | 10 | - | TSS region | transcription start site region 50498 | |
Tssr45599 | 5 | 37 | + | TSS region | transcription start site region 45599 | |
Tssr45600 | 5 | 7 | + | TSS region | transcription start site region 45600 | |
Tssr50499 | 5 | 40 | - | TSS region | transcription start site region 50499 | |
Tssr45601 | 5 | 14 | + | TSS region | transcription start site region 45601 | |
Tssr45602 | 5 | 7 | + | TSS region | transcription start site region 45602 | |
D5Dcr38 | 5 | 95 | DNA segment | DNA Segment, Chr 5, Derry C. Roopenian 38 | ||
D5Jcs66 | 5 | 157 | DNA segment | DNA segment, Chr 5, John C. Schimenti 66 | ||
D5Mit389 | 5 | 106 | DNA segment | DNA Segment, Chr 5 Massachusetts Institute of Technology 389 | ||
Cpgi15682 | 5 | 636 | CpG island | CpG island 15682 | ||
Tssr45603 | 5 | 11 | + | TSS region | transcription start site region 45603 | |
Tssr45604 | 5 | 63 | + | TSS region | transcription start site region 45604 | |
Mir5625 | 5 | 79 | + | miRNA gene | microRNA 5625 | |
Slc35f6 | 5 | 11790 | + | protein coding gene | solute carrier family 35, member F6 | |
Tssr45605 | 5 | 24 | + | TSS region | transcription start site region 45605 | |
Cpgi15683 | 5 | 543 | CpG island | CpG island 15683 | ||
Cenpa | 5 | 7951 | + | protein coding gene | centromere protein A | |
Tssr45606 | 5 | 73 | + | TSS region | transcription start site region 45606 | |
Tssr45607 | 5 | 15 | + | TSS region | transcription start site region 45607 | |
Gm18389 | 5 | 566 | + | pseudogene | predicted gene, 18389 | |
Cpgi15684 | 5 | 2619 | CpG island | CpG island 15684 | ||
Dpysl5 | 5 | 87800 | + | protein coding gene | dihydropyrimidinase-like 5 | |
Tssr45608 | 5 | 9 | + | TSS region | transcription start site region 45608 | |
Tssr45609 | 5 | 7 | + | TSS region | transcription start site region 45609 | |
Tssr45610 | 5 | 10 | + | TSS region | transcription start site region 45610 | |
Tssr45611 | 5 | 56 | + | TSS region | transcription start site region 45611 | |
D5Jcs303 | 5 | 152 | DNA segment | DNA segment, Chr 5, John C. Schimenti 303 | ||
Tssr45612 | 5 | 6 | + | TSS region | transcription start site region 45612 | |
Gm42764 | 5 | 1445 | + | sense intronic lncRNA gene | predicted gene 42764 | |
Cpgi15685 | 5 | 291 | CpG island | CpG island 15685 | ||
Tssr45613 | 5 | 22 | + | TSS region | transcription start site region 45613 | |
Tssr45614 | 5 | 26 | + | TSS region | transcription start site region 45614 | |
Tssr45615 | 5 | 27 | + | TSS region | transcription start site region 45615 | |
Tssr45616 | 5 | 18 | + | TSS region | transcription start site region 45616 | |
Tssr45617 | 5 | 12 | + | TSS region | transcription start site region 45617 | |
Tssr45618 | 5 | 7 | + | TSS region | transcription start site region 45618 | |
Tssr45619 | 5 | 17 | + | TSS region | transcription start site region 45619 | |
Tssr45620 | 5 | 60 | + | TSS region | transcription start site region 45620 | |
Tssr45621 | 5 | 50 | + | TSS region | transcription start site region 45621 | |
Gm46907 | 5 | 15354 | - | lncRNA gene | predicted gene, 46907 | |
D5Dcr40 | 5 | 99 | DNA segment | DNA Segment, Chr 5, Derry C. Roopenian 40 | ||
Cpgi15686 | 5 | 1017 | CpG island | CpG island 15686 | ||
Tssr45622 | 5 | 46 | + | TSS region | transcription start site region 45622 | |
Mapre3 | 5 | 51465 | + | protein coding gene | microtubule-associated protein, RP/EB family, member 3 | |
Tssr50500 | 5 | 10 | - | TSS region | transcription start site region 50500 | |
Tssr45623 | 5 | 54 | + | TSS region | transcription start site region 45623 | |
Tssr45624 | 5 | 16 | + | TSS region | transcription start site region 45624 | |
Tssr45625 | 5 | 11 | + | TSS region | transcription start site region 45625 | |
Gm19409 | 5 | 2857 | + | sense intronic lncRNA gene | predicted gene, 19409 | |
Gm15461 | 5 | 4635 | - | antisense lncRNA gene | predicted gene 15461 | |
Tssr50501 | 5 | 27 | - | TSS region | transcription start site region 50501 | |
Tssr45626 | 5 | 6 | + | TSS region | transcription start site region 45626 | |
Tssr45627 | 5 | 5 | + | TSS region | transcription start site region 45627 | |
Tssr45628 | 5 | 40 | + | TSS region | transcription start site region 45628 | |
Gm43808 | 5 | 2064 | - | unclassified gene | predicted gene 43808 | |
Cpgi15687 | 5 | 934 | CpG island | CpG island 15687 | ||
Tssr45629 | 5 | 3 | + | TSS region | transcription start site region 45629 | |
Tssr45630 | 5 | 22 | + | TSS region | transcription start site region 45630 | |
Tssr45631 | 5 | 41 | + | TSS region | transcription start site region 45631 | |
Tmem214 | 5 | 7822 | + | protein coding gene | transmembrane protein 214 | |
Tssr45632 | 5 | 34 | + | TSS region | transcription start site region 45632 | |
Gm35795 | 5 | 2725 | - | lncRNA gene | predicted gene, 35795 | |
Cpgi15688 | 5 | 647 | CpG island | CpG island 15688 | ||
Tssr45633 | 5 | 13 | + | TSS region | transcription start site region 45633 | |
Tssr45634 | 5 | 4 | + | TSS region | transcription start site region 45634 | |
n-TYgta9 | 5 | 88 | + | tRNA gene | nuclear encoded tRNA tyrosine 9 (anticodon GTA) | |
Agbl5 | 5 | 18174 | + | protein coding gene | ATP/GTP binding protein-like 5 | |
n-TAagc15 | 5 | 72 | + | tRNA gene | nuclear encoded tRNA alanine 15 (anticodon AGC) | |
Cpgi15689 | 5 | 1046 | CpG island | CpG island 15689 | ||
Tssr50502 | 5 | 10 | - | TSS region | transcription start site region 50502 | |
Tssr45635 | 5 | 70 | + | TSS region | transcription start site region 45635 | |
Tssr45636 | 5 | 41 | + | TSS region | transcription start site region 45636 | |
Tssr45637 | 5 | 24 | + | TSS region | transcription start site region 45637 | |
Tssr45638 | 5 | 78 | + | TSS region | transcription start site region 45638 | |
Tssr45639 | 5 | 12 | + | TSS region | transcription start site region 45639 | |
5930420M18Rik | 5 | 2280 | + | unclassified gene | RIKEN cDNA 5930420M18 gene | |
Ost4 | 5 | 1294 | - | protein coding gene | oligosaccharyltransferase complex subunit 4 (non-catalytic) | |
Cpgi15690 | 5 | 1128 | CpG island | CpG island 15690 | ||
Tssr50503 | 5 | 11 | - | TSS region | transcription start site region 50503 | |
Tssr50504 | 5 | 61 | - | TSS region | transcription start site region 50504 | |
Tssr45640 | 5 | 21 | + | TSS region | transcription start site region 45640 | |
Tssr45641 | 5 | 5 | + | TSS region | transcription start site region 45641 | |
Emilin1 | 5 | 7875 | + | protein coding gene | elastin microfibril interfacer 1 | |
Tssr45642 | 5 | 21 | + | TSS region | transcription start site region 45642 | |
Tssr45643 | 5 | 33 | + | TSS region | transcription start site region 45643 | |
Tssr45644 | 5 | 11 | + | TSS region | transcription start site region 45644 | |
Tssr45645 | 5 | 11 | + | TSS region | transcription start site region 45645 | |
Tssr45646 | 5 | 42 | + | TSS region | transcription start site region 45646 | |
Tssr45647 | 5 | 105 | + | TSS region | transcription start site region 45647 |