Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:30059856-30259864

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tyms 5 30058202 to 30073617 15415 - protein coding gene thymidylate synthase
D5Mit176 5 30068614 to 30068701 87 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 176
Tssr50473 5 30072364 to 30072368 4 - TSS region transcription start site region 50473
Cpgi15671 5 30073181 to 30073741 560 CpG island CpG island 15671
Tssr50474 5 30073554 to 30073609 55 - TSS region transcription start site region 50474
Gm4961 5 30092940 to 30097686 4746 + pseudogene predicted pseudogene 4961
Gm21019 5 30096038 to 30097262 1224 - pseudogene predicted gene, 21019
3110082J24Rik 5 30103584 to 30106086 2502 - protein coding gene RIKEN cDNA 3110082J24 gene
Cpgi15672 5 30104844 to 30105936 1092 CpG island CpG island 15672
Tssr45570 5 30105177 to 30105219 42 + TSS region transcription start site region 45570
Garem2 5 30105196 to 30118380 13184 + protein coding gene GRB2 associated regulator of MAPK1 subtype 2
Tssr50475 5 30106075 to 30106105 30 - TSS region transcription start site region 50475
Cpgi15673 5 30111196 to 30111480 284 CpG island CpG island 15673
Cpgi15674 5 30113582 to 30115334 1752 CpG island CpG island 15674
Tssr50476 5 30114645 to 30114652 7 - TSS region transcription start site region 50476
Hadha 5 30118304 to 30154980 36676 - protein coding gene hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit
Tssr50477 5 30119794 to 30119810 16 - TSS region transcription start site region 50477
Tssr50478 5 30120225 to 30120238 13 - TSS region transcription start site region 50478
Tssr50479 5 30120771 to 30120785 14 - TSS region transcription start site region 50479
Tssr45571 5 30144225 to 30144249 24 + TSS region transcription start site region 45571
Tssr50480 5 30144259 to 30144308 49 - TSS region transcription start site region 50480
Tssr50481 5 30148016 to 30148025 9 - TSS region transcription start site region 50481
Cpgi15675 5 30154540 to 30155805 1265 CpG island CpG island 15675
Tssr50482 5 30154956 to 30154986 30 - TSS region transcription start site region 50482
Tssr50483 5 30155101 to 30155112 11 - TSS region transcription start site region 50483
Tssr1442 5 30155115 to 30155126 11 - TSS region transcription start site region 1442
Tssr45572 5 30155243 to 30155311 68 + TSS region transcription start site region 45572
Hadhb 5 30155253 to 30184593 29340 + protein coding gene hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit
Tssr45573 5 30155315 to 30155336 21 + TSS region transcription start site region 45573
Tssr50484 5 30155483 to 30155530 47 - TSS region transcription start site region 50484
Tssr45574 5 30156725 to 30156729 4 + TSS region transcription start site region 45574
Tssr45575 5 30159856 to 30159864 8 + TSS region transcription start site region 45575
Tssr45576 5 30159905 to 30159912 7 + TSS region transcription start site region 45576
Tssr45577 5 30159920 to 30159940 20 + TSS region transcription start site region 45577
Tssr45578 5 30166100 to 30166104 4 + TSS region transcription start site region 45578
Mir1960 5 30170739 to 30170816 77 + miRNA gene microRNA 1960
Tssr1443 5 30181803 to 30181805 2 + TSS region transcription start site region 1443
Adgrf3 5 30193431 to 30205722 12291 - protein coding gene adhesion G protein-coupled receptor F3
D5Mit3 5 30194084 to 30194245 161 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 3
Tssr50485 5 30198398 to 30198425 27 - TSS region transcription start site region 50485
D730001M18Rik 5 30206664 to 30207340 676 unclassified gene RIKEN cDNA D730001M18 gene
Cpgi15676 5 30232105 to 30233129 1024 CpG island CpG island 15676
Tssr50486 5 30232344 to 30232349 5 - TSS region transcription start site region 50486
Tssr50487 5 30232366 to 30232409 43 - TSS region transcription start site region 50487
Tssr45579 5 30232615 to 30232680 65 + TSS region transcription start site region 45579
Selenoi 5 30232618 to 30272430 39812 + protein coding gene selenoprotein I
Tssr45580 5 30232688 to 30232695 7 + TSS region transcription start site region 45580
Gm16288 5 30240082 to 30240448 366 - pseudogene predicted gene 16288