Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:28444208-30694267

Filter by:
245 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5D5Mit348-D5Mit389)6Jcs 5 24919119 to 30647294 5728175 complex/cluster/region deletion, Chr 5, John C. Schimenti 6
Shh 5 28456840 to 28467101 10261 - protein coding gene sonic hedgehog
Cpgi15656 5 28457770 to 28459390 1620 CpG island CpG island 15656
Tssr50453 5 28458842 to 28458854 12 - TSS region transcription start site region 50453
Tssr50454 5 28458896 to 28458910 14 - TSS region transcription start site region 50454
Tssr50455 5 28458942 to 28458958 16 - TSS region transcription start site region 50455
Cpgi15657 5 28459848 to 28460246 398 CpG island CpG island 15657
Cpgi15658 5 28462871 to 28463414 543 CpG island CpG island 15658
Cpgi15659 5 28463720 to 28465870 2150 CpG island CpG island 15659
Gm26894 5 28466374 to 28480973 14599 + lincRNA gene predicted gene, 26894
Cpgi15660 5 28466603 to 28467145 542 CpG island CpG island 15660
9530036O11Rik 5 28466984 to 28719209 252225 + antisense lncRNA gene RIKEN cDNA 9530036O11Rik
Tssr50456 5 28467044 to 28467050 6 - TSS region transcription start site region 50456
Tssr50457 5 28467093 to 28467109 16 - TSS region transcription start site region 50457
Gm10290 5 28538570 to 28539568 998 + pseudogene predicted pseudogene 10290
Gm43161 5 28577273 to 28578960 1687 + unclassified gene predicted gene 43161
Gm42243 5 28840656 to 28858429 17773 + lncRNA gene predicted gene, 42243
D5Mit195 5 28875393 to 28875495 102 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 195
Gm35688 5 28890378 to 29004724 114346 - lncRNA gene predicted gene, 35688
Tssr45525 5 28914032 to 28914034 2 + TSS region transcription start site region 45525
Gm35881 5 29008447 to 29010527 2080 + lncRNA gene predicted gene, 35881
Rnf32 5 29195185 to 29227635 32450 + protein coding gene ring finger protein 32
Cpgi15661 5 29195380 to 29196502 1122 CpG island CpG island 15661
Tssr50458 5 29195795 to 29195827 32 - TSS region transcription start site region 50458
Tssr45526 5 29195983 to 29196032 49 + TSS region transcription start site region 45526
Tssr45527 5 29196033 to 29196063 30 + TSS region transcription start site region 45527
Tssr45528 5 29196070 to 29196085 15 + TSS region transcription start site region 45528
Tssr45529 5 29196101 to 29196123 22 + TSS region transcription start site region 45529
Gm7420 5 29217724 to 29218565 841 + pseudogene predicted gene 7420
Tssr45530 5 29223948 to 29223949 1 + TSS region transcription start site region 45530
4921534E14Rik 5 29226289 to 29228456 2167 unclassified gene RIKEN cDNA 4921534E14 gene
Lmbr1 5 29229802 to 29378390 148588 - protein coding gene limb region 1
Gm42244 5 29271762 to 29274134 2372 - lncRNA gene predicted gene, 42244
C79130 5 29276002 to 29280297 4295 - protein coding gene expressed sequence C79130
Gm23801 5 29336780 to 29336846 66 - miRNA gene predicted gene, 23801
Tssr50459 5 29365092 to 29365100 8 - TSS region transcription start site region 50459
Tssr50460 5 29365147 to 29365151 4 - TSS region transcription start site region 50460
D5Jcs62 5 29366546 to 29366696 150 DNA segment DNA segment, Chr 5, John C. Schimenti 62
Cpgi15662 5 29377716 to 29378912 1196 CpG island CpG island 15662
Tssr45531 5 29377774 to 29377810 36 + TSS region transcription start site region 45531
Tssr50461 5 29378319 to 29378335 16 - TSS region transcription start site region 50461
Tssr50462 5 29378337 to 29378401 64 - TSS region transcription start site region 50462
Tssr45532 5 29378604 to 29378607 3 + TSS region transcription start site region 45532
4632411P08Rik 5 29378699 to 29390488 11789 + lincRNA gene RIKEN cDNA 4632411P08 gene
Gm36086 5 29386860 to 29388302 1442 - lncRNA gene predicted gene, 36086
Cpgi15663 5 29434589 to 29435487 898 CpG island CpG island 15663
Nom1 5 29434659 to 29452169 17510 + protein coding gene nucleolar protein with MIF4G domain 1
Tssr45533 5 29434669 to 29434745 76 + TSS region transcription start site region 45533
Cpgi15664 5 29467644 to 29468342 698 CpG island CpG island 15664
Cpgi15665 5 29471188 to 29471450 262 CpG island CpG island 15665
Cpgi15666 5 29473816 to 29475033 1217 CpG island CpG island 15666
Mnx1 5 29473823 to 29478470 4647 - protein coding gene motor neuron and pancreas homeobox 1
Cpgi15667 5 29477397 to 29479016 1619 CpG island CpG island 15667
Tssr50463 5 29478578 to 29478597 19 - TSS region transcription start site region 50463
Tssr50464 5 29478630 to 29478638 8 - TSS region transcription start site region 50464
Gm24538 5 29481525 to 29481631 106 - snRNA gene predicted gene, 24538
Cpgi15668 5 29485494 to 29486048 554 CpG island CpG island 15668
D5Jcs63 5 29524175 to 29524318 143 DNA segment DNA segment, Chr 5, John C. Schimenti 63
Tssr45534 5 29538089 to 29538095 6 + TSS region transcription start site region 45534
Gm6083 5 29538153 to 29538509 356 + pseudogene predicted gene 6083
Cpgi15669 5 29568831 to 29570067 1236 CpG island CpG island 15669
Tssr45535 5 29569208 to 29569267 59 + TSS region transcription start site region 45535
Ube3c 5 29569242 to 29676077 106835 + protein coding gene ubiquitin protein ligase E3C
Tssr45536 5 29569342 to 29569354 12 + TSS region transcription start site region 45536
Tssr45537 5 29569438 to 29569448 10 + TSS region transcription start site region 45537
Tssr45538 5 29569449 to 29569459 10 + TSS region transcription start site region 45538
Tssr45539 5 29569463 to 29569481 18 + TSS region transcription start site region 45539
Tssr45540 5 29569490 to 29569499 9 + TSS region transcription start site region 45540
Tssr45541 5 29569820 to 29569830 10 + TSS region transcription start site region 45541
Tssr45542 5 29569838 to 29569853 15 + TSS region transcription start site region 45542
Tssr45543 5 29587566 to 29587567 1 + TSS region transcription start site region 45543
Tssr50465 5 29609905 to 29609911 6 - TSS region transcription start site region 50465
Tssr1441 5 29636696 to 29636708 12 + TSS region transcription start site region 1441
Tssr45544 5 29658999 to 29659002 3 + TSS region transcription start site region 45544
Tssr45545 5 29676528 to 29676532 4 + TSS region transcription start site region 45545
Gm42245 5 29684782 to 29699989 15207 - lncRNA gene predicted gene, 42245
Gm42570 5 29691422 to 29691713 291 + pseudogene predicted gene 42570
D5Jcs64 5 29693269 to 29693426 157 DNA segment DNA segment, Chr 5, John C. Schimenti 64
Gm26346 5 29709634 to 29709962 328 + unclassified non-coding RNA gene predicted gene, 26346
Gm43117 5 29719328 to 29719706 378 - pseudogene predicted gene 43117
Cpgi15670 5 29735513 to 29736656 1143 CpG island CpG island 15670
Gm5129 5 29735637 to 29735936 299 - unclassified gene predicted gene 5129
Dnajb6 5 29735693 to 29786478 50785 + protein coding gene DnaJ heat shock protein family (Hsp40) member B6
Tssr45546 5 29735725 to 29735737 12 + TSS region transcription start site region 45546
Tssr45547 5 29735739 to 29735751 12 + TSS region transcription start site region 45547
Tssr45548 5 29735822 to 29735831 9 + TSS region transcription start site region 45548
Tssr45549 5 29735837 to 29735850 13 + TSS region transcription start site region 45549
Tssr50466 5 29735883 to 29735893 10 - TSS region transcription start site region 50466
Tssr50467 5 29735902 to 29735925 23 - TSS region transcription start site region 50467
Tssr50468 5 29735928 to 29735945 17 - TSS region transcription start site region 50468
Tssr45550 5 29735967 to 29735989 22 + TSS region transcription start site region 45550
Tssr45551 5 29735991 to 29736011 20 + TSS region transcription start site region 45551
Tssr45552 5 29736112 to 29736140 28 + TSS region transcription start site region 45552
Tssr50469 5 29736412 to 29736428 16 - TSS region transcription start site region 50469
Tssr45553 5 29736451 to 29736460 9 + TSS region transcription start site region 45553
C130031E09Rik 5 29787687 to 29789384 1697 unclassified gene RIKEN cDNA C130031E09 gene
Gm5552 5 29794523 to 29795037 514 - pseudogene predicted gene 5552
Tssr50470 5 29795214 to 29795220 6 - TSS region transcription start site region 50470
Gm2213 5 29807471 to 29808158 687 - pseudogene predicted gene 2213
Gm1969 5 29832088 to 29833307 1219 - pseudogene predicted gene 1969
D5Jcs65 5 29863795 to 29863944 149 DNA segment DNA segment, Chr 5, John C. Schimenti 65
Gm42450 5 29886728 to 29891964 5236 - lincRNA gene predicted gene 42450
Tssr45554 5 29936387 to 29936395 8 + TSS region transcription start site region 45554
Gm43386 5 29946718 to 29950718 4000 - unclassified gene predicted gene 43386
Gm10469 5 29946719 to 29950717 3998 protein coding gene predicted gene 10469
A230098N10Rik 5 29996141 to 30008798 12657 - lincRNA gene RIKEN cDNA A230098N10 gene
Tssr50471 5 30008836 to 30008845 9 - TSS region transcription start site region 50471
D5Mit410 5 30012635 to 30012765 130 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 410
Tssr45555 5 30013084 to 30013089 5 + TSS region transcription start site region 45555
Il6 5 30013114 to 30019975 6861 + protein coding gene interleukin 6
Tssr45556 5 30013141 to 30013143 2 + TSS region transcription start site region 45556
Tssr45557 5 30013272 to 30013277 5 + TSS region transcription start site region 45557
Tssr45558 5 30013280 to 30013323 43 + TSS region transcription start site region 45558
Tssr45559 5 30013333 to 30013373 40 + TSS region transcription start site region 45559
Tssr45560 5 30013383 to 30013395 12 + TSS region transcription start site region 45560
Tssr45561 5 30013558 to 30013564 6 + TSS region transcription start site region 45561
Tssr45562 5 30013795 to 30013805 10 + TSS region transcription start site region 45562
Tssr45563 5 30013834 to 30013846 12 + TSS region transcription start site region 45563
D5Mit44 5 30013860 to 30014133 273 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 44
Tssr45564 5 30013910 to 30013915 5 + TSS region transcription start site region 45564
D5Nds8 5 30013962 to 30014079 117 DNA segment DNA segment, Chr 5, Nuffield Department of Surgery 8
Tssr45565 5 30013970 to 30013979 9 + TSS region transcription start site region 45565
Tssr45566 5 30014088 to 30014105 17 + TSS region transcription start site region 45566
Tssr50472 5 30014190 to 30014194 4 - TSS region transcription start site region 50472
Tssr45567 5 30017928 to 30017932 4 + TSS region transcription start site region 45567
Tssr45568 5 30019546 to 30019556 10 + TSS region transcription start site region 45568
Tssr45569 5 30020855 to 30020858 3 + TSS region transcription start site region 45569
C330025O08Rik 5 30038467 to 30039280 813 unclassified gene RIKEN cDNA C330025O08 gene
Tyms 5 30058202 to 30073617 15415 - protein coding gene thymidylate synthase
D5Mit176 5 30068614 to 30068701 87 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 176
Tssr50473 5 30072364 to 30072368 4 - TSS region transcription start site region 50473
Cpgi15671 5 30073181 to 30073741 560 CpG island CpG island 15671
Tssr50474 5 30073554 to 30073609 55 - TSS region transcription start site region 50474
Gm4961 5 30092940 to 30097686 4746 + pseudogene predicted pseudogene 4961
Gm21019 5 30096038 to 30097262 1224 - pseudogene predicted gene, 21019
3110082J24Rik 5 30103584 to 30106086 2502 - protein coding gene RIKEN cDNA 3110082J24 gene
Cpgi15672 5 30104844 to 30105936 1092 CpG island CpG island 15672
Tssr45570 5 30105177 to 30105219 42 + TSS region transcription start site region 45570
Garem2 5 30105196 to 30118380 13184 + protein coding gene GRB2 associated regulator of MAPK1 subtype 2
Tssr50475 5 30106075 to 30106105 30 - TSS region transcription start site region 50475
Cpgi15673 5 30111196 to 30111480 284 CpG island CpG island 15673
Cpgi15674 5 30113582 to 30115334 1752 CpG island CpG island 15674
Tssr50476 5 30114645 to 30114652 7 - TSS region transcription start site region 50476
Hadha 5 30118304 to 30154980 36676 - protein coding gene hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit
Tssr50477 5 30119794 to 30119810 16 - TSS region transcription start site region 50477
Tssr50478 5 30120225 to 30120238 13 - TSS region transcription start site region 50478
Tssr50479 5 30120771 to 30120785 14 - TSS region transcription start site region 50479
Tssr45571 5 30144225 to 30144249 24 + TSS region transcription start site region 45571
Tssr50480 5 30144259 to 30144308 49 - TSS region transcription start site region 50480
Tssr50481 5 30148016 to 30148025 9 - TSS region transcription start site region 50481
Cpgi15675 5 30154540 to 30155805 1265 CpG island CpG island 15675
Tssr50482 5 30154956 to 30154986 30 - TSS region transcription start site region 50482
Tssr50483 5 30155101 to 30155112 11 - TSS region transcription start site region 50483
Tssr1442 5 30155115 to 30155126 11 - TSS region transcription start site region 1442
Tssr45572 5 30155243 to 30155311 68 + TSS region transcription start site region 45572
Hadhb 5 30155253 to 30184593 29340 + protein coding gene hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit
Tssr45573 5 30155315 to 30155336 21 + TSS region transcription start site region 45573
Tssr50484 5 30155483 to 30155530 47 - TSS region transcription start site region 50484
Tssr45574 5 30156725 to 30156729 4 + TSS region transcription start site region 45574
Tssr45575 5 30159856 to 30159864 8 + TSS region transcription start site region 45575
Tssr45576 5 30159905 to 30159912 7 + TSS region transcription start site region 45576
Tssr45577 5 30159920 to 30159940 20 + TSS region transcription start site region 45577
Tssr45578 5 30166100 to 30166104 4 + TSS region transcription start site region 45578
Mir1960 5 30170739 to 30170816 77 + miRNA gene microRNA 1960
Tssr1443 5 30181803 to 30181805 2 + TSS region transcription start site region 1443
Adgrf3 5 30193431 to 30205722 12291 - protein coding gene adhesion G protein-coupled receptor F3
D5Mit3 5 30194084 to 30194245 161 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 3
Tssr50485 5 30198398 to 30198425 27 - TSS region transcription start site region 50485
D730001M18Rik 5 30206664 to 30207340 676 unclassified gene RIKEN cDNA D730001M18 gene
Cpgi15676 5 30232105 to 30233129 1024 CpG island CpG island 15676
Tssr50486 5 30232344 to 30232349 5 - TSS region transcription start site region 50486
Tssr50487 5 30232366 to 30232409 43 - TSS region transcription start site region 50487
Tssr45579 5 30232615 to 30232680 65 + TSS region transcription start site region 45579
Selenoi 5 30232618 to 30272430 39812 + protein coding gene selenoprotein I
Tssr45580 5 30232688 to 30232695 7 + TSS region transcription start site region 45580
Gm16288 5 30240082 to 30240448 366 - pseudogene predicted gene 16288
Tssr45581 5 30263537 to 30263549 12 + TSS region transcription start site region 45581
Cpgi15677 5 30281299 to 30281666 367 CpG island CpG island 15677
Tssr45582 5 30281377 to 30281447 70 + TSS region transcription start site region 45582
Drc1 5 30281388 to 30366695 85307 + protein coding gene dynein regulatory complex subunit 1
Cpgi15678 5 30342779 to 30342938 159 CpG island CpG island 15678
Tssr50488 5 30355228 to 30355275 47 - TSS region transcription start site region 50488
Gm43755 5 30366046 to 30366490 444 + sense intronic lncRNA gene predicted gene 43755
Otof 5 30367062 to 30461932 94870 - protein coding gene otoferlin
D5Jcs300 5 30406323 to 30406473 150 DNA segment DNA segment, Chr 5, John C. Schimenti 300
Tssr50489 5 30408030 to 30408033 3 - TSS region transcription start site region 50489
Tssr50490 5 30408043 to 30408067 24 - TSS region transcription start site region 50490
Tssr50491 5 30408082 to 30408091 9 - TSS region transcription start site region 50491
Tssr1444 5 30461839 to 30461861 22 - TSS region transcription start site region 1444
Tssr50492 5 30461909 to 30461942 33 - TSS region transcription start site region 50492
Tssr1445 5 30461952 to 30461969 17 - TSS region transcription start site region 1445
Cpgi15679 5 30465928 to 30466288 360 CpG island CpG island 15679
Tssr45583 5 30466044 to 30466092 48 + TSS region transcription start site region 45583
1700001C02Rik 5 30466047 to 30484088 18041 + protein coding gene RIKEN cDNA 1700001C02 gene
D5Jcs301 5 30471729 to 30471960 231 DNA segment DNA segment, Chr 5, John C. Schimenti 301
D5Dcr37 5 30471842 to 30471938 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 37
Cib4 5 30485583 to 30545836 60253 - protein coding gene calcium and integrin binding family member 4
Gm25666 5 30514578 to 30514684 106 - snRNA gene predicted gene, 25666
Gm42765 5 30529457 to 30543830 14373 + antisense lncRNA gene predicted gene 42765
Tssr50493 5 30545810 to 30545822 12 - TSS region transcription start site region 50493