Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:28434032-29394034

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shh 5 28456840 to 28467101 10261 - protein coding gene sonic hedgehog
Cpgi15656 5 28457770 to 28459390 1620 CpG island CpG island 15656
Tssr50453 5 28458842 to 28458854 12 - TSS region transcription start site region 50453
Tssr50454 5 28458896 to 28458910 14 - TSS region transcription start site region 50454
Tssr50455 5 28458942 to 28458958 16 - TSS region transcription start site region 50455
Cpgi15657 5 28459848 to 28460246 398 CpG island CpG island 15657
Cpgi15658 5 28462871 to 28463414 543 CpG island CpG island 15658
Cpgi15659 5 28463720 to 28465870 2150 CpG island CpG island 15659
Gm26894 5 28466374 to 28480973 14599 + lincRNA gene predicted gene, 26894
Cpgi15660 5 28466603 to 28467145 542 CpG island CpG island 15660
9530036O11Rik 5 28466984 to 28719209 252225 + antisense lncRNA gene RIKEN cDNA 9530036O11Rik
Tssr50456 5 28467044 to 28467050 6 - TSS region transcription start site region 50456
Tssr50457 5 28467093 to 28467109 16 - TSS region transcription start site region 50457
Gm10290 5 28538570 to 28539568 998 + pseudogene predicted pseudogene 10290
Gm43161 5 28577273 to 28578960 1687 + unclassified gene predicted gene 43161
Gm42243 5 28840656 to 28858429 17773 + lncRNA gene predicted gene, 42243
D5Mit195 5 28875393 to 28875495 102 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 195
Gm35688 5 28890378 to 29004724 114346 - lncRNA gene predicted gene, 35688
Tssr45525 5 28914032 to 28914034 2 + TSS region transcription start site region 45525
Gm35881 5 29008447 to 29010527 2080 + lncRNA gene predicted gene, 35881
Rnf32 5 29195185 to 29227635 32450 + protein coding gene ring finger protein 32
Cpgi15661 5 29195380 to 29196502 1122 CpG island CpG island 15661
Tssr50458 5 29195795 to 29195827 32 - TSS region transcription start site region 50458
Tssr45526 5 29195983 to 29196032 49 + TSS region transcription start site region 45526
Tssr45527 5 29196033 to 29196063 30 + TSS region transcription start site region 45527
Tssr45528 5 29196070 to 29196085 15 + TSS region transcription start site region 45528
Tssr45529 5 29196101 to 29196123 22 + TSS region transcription start site region 45529
Gm7420 5 29217724 to 29218565 841 + pseudogene predicted gene 7420
Tssr45530 5 29223948 to 29223949 1 + TSS region transcription start site region 45530
4921534E14Rik 5 29226289 to 29228456 2167 unclassified gene RIKEN cDNA 4921534E14 gene
Lmbr1 5 29229802 to 29378390 148588 - protein coding gene limb region 1
Gm42244 5 29271762 to 29274134 2372 - lncRNA gene predicted gene, 42244
C79130 5 29276002 to 29280297 4295 - protein coding gene expressed sequence C79130
Gm23801 5 29336780 to 29336846 66 - miRNA gene predicted gene, 23801
Tssr50459 5 29365092 to 29365100 8 - TSS region transcription start site region 50459
Tssr50460 5 29365147 to 29365151 4 - TSS region transcription start site region 50460
D5Jcs62 5 29366546 to 29366696 150 DNA segment DNA segment, Chr 5, John C. Schimenti 62
Cpgi15662 5 29377716 to 29378912 1196 CpG island CpG island 15662
Tssr45531 5 29377774 to 29377810 36 + TSS region transcription start site region 45531
Tssr50461 5 29378319 to 29378335 16 - TSS region transcription start site region 50461
Tssr50462 5 29378337 to 29378401 64 - TSS region transcription start site region 50462
Tssr45532 5 29378604 to 29378607 3 + TSS region transcription start site region 45532
4632411P08Rik 5 29378699 to 29390488 11789 + lincRNA gene RIKEN cDNA 4632411P08 gene
Gm36086 5 29386860 to 29388302 1442 - lncRNA gene predicted gene, 36086