Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:28228720-28700870

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cnpy1 5 28200819 to 28245788 44969 - protein coding gene canopy FGF signaling regulator 1
Tssr50451 5 28237879 to 28237888 9 - TSS region transcription start site region 50451
Gm35524 5 28289690 to 28293353 3663 - lncRNA gene predicted gene, 35524
Gm35602 5 28297370 to 28316726 19356 - lncRNA gene predicted gene, 35602
Cpgi15655 5 28316502 to 28317748 1246 CpG island CpG island 15655
Tssr45517 5 28316844 to 28316920 76 + TSS region transcription start site region 45517
Tssr45518 5 28316928 to 28317008 80 + TSS region transcription start site region 45518
Rbm33 5 28317121 to 28419239 102118 + protein coding gene RNA binding motif protein 33
Tssr45519 5 28317153 to 28317220 67 + TSS region transcription start site region 45519
Tssr45520 5 28317886 to 28317890 4 + TSS region transcription start site region 45520
B930032E21Rik 5 28322471 to 28327016 4545 unclassified gene RIKEN cDNA B930032E21 gene
Tssr45521 5 28324442 to 28324446 4 + TSS region transcription start site region 45521
Tssr45522 5 28354848 to 28354853 5 + TSS region transcription start site region 45522
Tssr45523 5 28368240 to 28368284 44 + TSS region transcription start site region 45523
Tssr45524 5 28373088 to 28373092 4 + TSS region transcription start site region 45524
Tssr50452 5 28413813 to 28413821 8 - TSS region transcription start site region 50452
Shh 5 28456840 to 28467101 10261 - protein coding gene sonic hedgehog
Cpgi15656 5 28457770 to 28459390 1620 CpG island CpG island 15656
Tssr50453 5 28458842 to 28458854 12 - TSS region transcription start site region 50453
Tssr50454 5 28458896 to 28458910 14 - TSS region transcription start site region 50454
Tssr50455 5 28458942 to 28458958 16 - TSS region transcription start site region 50455
Cpgi15657 5 28459848 to 28460246 398 CpG island CpG island 15657
Cpgi15658 5 28462871 to 28463414 543 CpG island CpG island 15658
Cpgi15659 5 28463720 to 28465870 2150 CpG island CpG island 15659
Gm26894 5 28466374 to 28480973 14599 + lincRNA gene predicted gene, 26894
Cpgi15660 5 28466603 to 28467145 542 CpG island CpG island 15660
9530036O11Rik 5 28466984 to 28719209 252225 + antisense lncRNA gene RIKEN cDNA 9530036O11Rik
Tssr50456 5 28467044 to 28467050 6 - TSS region transcription start site region 50456
Tssr50457 5 28467093 to 28467109 16 - TSS region transcription start site region 50457
Gm10290 5 28538570 to 28539568 998 + pseudogene predicted pseudogene 10290
Gm43161 5 28577273 to 28578960 1687 + unclassified gene predicted gene 43161