Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:28149088-31879105

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612 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5D5Mit348-D5Mit389)6Jcs 5 24919119 to 30647294 5728175 complex/cluster/region deletion, Chr 5, John C. Schimenti 6
Cpgi15646 5 28157899 to 28158623 724 CpG island CpG island 15646
Cpgi15647 5 28159124 to 28159516 392 CpG island CpG island 15647
Cpgi15648 5 28161739 to 28162489 750 CpG island CpG island 15648
Cpgi15649 5 28165038 to 28167342 2304 CpG island CpG island 15649
Tssr45514 5 28165359 to 28165370 11 + TSS region transcription start site region 45514
Tssr50436 5 28165463 to 28165474 11 - TSS region transcription start site region 50436
Tssr45515 5 28165690 to 28165717 27 + TSS region transcription start site region 45515
En2 5 28165696 to 28172166 6470 + protein coding gene engrailed 2
Mym 5 28168475 to 28168839 364 unclassified gene myocyte maintenance
Gm43610 5 28168476 to 28168840 364 - unclassified gene predicted gene 43610
Cpgi15650 5 28168601 to 28169165 564 CpG island CpG island 15650
Cpgi15651 5 28170331 to 28170496 165 CpG island CpG island 15651
Cpgi15652 5 28170952 to 28171321 369 CpG island CpG island 15652
Cpgi15653 5 28175374 to 28175551 177 CpG island CpG island 15653
Gm42242 5 28178207 to 28187954 9747 + lncRNA gene predicted gene, 42242
Gm35395 5 28189566 to 28200736 11170 + lncRNA gene predicted gene, 35395
Cnpy1 5 28200819 to 28245788 44969 - protein coding gene canopy FGF signaling regulator 1
Cpgi15654 5 28209265 to 28210478 1213 CpG island CpG island 15654
Tssr50437 5 28209747 to 28209764 17 - TSS region transcription start site region 50437
Tssr50438 5 28209818 to 28209829 11 - TSS region transcription start site region 50438
Tssr50439 5 28209843 to 28209862 19 - TSS region transcription start site region 50439
Tssr50440 5 28209904 to 28209914 10 - TSS region transcription start site region 50440
Tssr50441 5 28209916 to 28209935 19 - TSS region transcription start site region 50441
Tssr50442 5 28209961 to 28209979 18 - TSS region transcription start site region 50442
Tssr50443 5 28210031 to 28210034 3 - TSS region transcription start site region 50443
Tssr50444 5 28210047 to 28210055 8 - TSS region transcription start site region 50444
Tssr50445 5 28210067 to 28210082 15 - TSS region transcription start site region 50445
Tssr50446 5 28210087 to 28210100 13 - TSS region transcription start site region 50446
Tssr45516 5 28210122 to 28210133 11 + TSS region transcription start site region 45516
Tssr50447 5 28210170 to 28210179 9 - TSS region transcription start site region 50447
Tssr50448 5 28210392 to 28210396 4 - TSS region transcription start site region 50448
Tssr50449 5 28210398 to 28210405 7 - TSS region transcription start site region 50449
Tssr50450 5 28210414 to 28210428 14 - TSS region transcription start site region 50450
Tssr50451 5 28237879 to 28237888 9 - TSS region transcription start site region 50451
Gm35524 5 28289690 to 28293353 3663 - lncRNA gene predicted gene, 35524
Gm35602 5 28297370 to 28316726 19356 - lncRNA gene predicted gene, 35602
Cpgi15655 5 28316502 to 28317748 1246 CpG island CpG island 15655
Tssr45517 5 28316844 to 28316920 76 + TSS region transcription start site region 45517
Tssr45518 5 28316928 to 28317008 80 + TSS region transcription start site region 45518
Rbm33 5 28317121 to 28419239 102118 + protein coding gene RNA binding motif protein 33
Tssr45519 5 28317153 to 28317220 67 + TSS region transcription start site region 45519
Tssr45520 5 28317886 to 28317890 4 + TSS region transcription start site region 45520
B930032E21Rik 5 28322471 to 28327016 4545 unclassified gene RIKEN cDNA B930032E21 gene
Tssr45521 5 28324442 to 28324446 4 + TSS region transcription start site region 45521
Tssr45522 5 28354848 to 28354853 5 + TSS region transcription start site region 45522
Tssr45523 5 28368240 to 28368284 44 + TSS region transcription start site region 45523
Tssr45524 5 28373088 to 28373092 4 + TSS region transcription start site region 45524
Tssr50452 5 28413813 to 28413821 8 - TSS region transcription start site region 50452
Shh 5 28456840 to 28467101 10261 - protein coding gene sonic hedgehog
Cpgi15656 5 28457770 to 28459390 1620 CpG island CpG island 15656
Tssr50453 5 28458842 to 28458854 12 - TSS region transcription start site region 50453
Tssr50454 5 28458896 to 28458910 14 - TSS region transcription start site region 50454
Tssr50455 5 28458942 to 28458958 16 - TSS region transcription start site region 50455
Cpgi15657 5 28459848 to 28460246 398 CpG island CpG island 15657
Cpgi15658 5 28462871 to 28463414 543 CpG island CpG island 15658
Cpgi15659 5 28463720 to 28465870 2150 CpG island CpG island 15659
Gm26894 5 28466374 to 28480973 14599 + lincRNA gene predicted gene, 26894
Cpgi15660 5 28466603 to 28467145 542 CpG island CpG island 15660
9530036O11Rik 5 28466984 to 28719209 252225 + antisense lncRNA gene RIKEN cDNA 9530036O11Rik
Tssr50456 5 28467044 to 28467050 6 - TSS region transcription start site region 50456
Tssr50457 5 28467093 to 28467109 16 - TSS region transcription start site region 50457
Gm10290 5 28538570 to 28539568 998 + pseudogene predicted pseudogene 10290
Gm43161 5 28577273 to 28578960 1687 + unclassified gene predicted gene 43161
Gm42243 5 28840656 to 28858429 17773 + lncRNA gene predicted gene, 42243
D5Mit195 5 28875393 to 28875495 102 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 195
Gm35688 5 28890378 to 29004724 114346 - lncRNA gene predicted gene, 35688
Tssr45525 5 28914032 to 28914034 2 + TSS region transcription start site region 45525
Gm35881 5 29008447 to 29010527 2080 + lncRNA gene predicted gene, 35881
Rnf32 5 29195185 to 29227635 32450 + protein coding gene ring finger protein 32
Cpgi15661 5 29195380 to 29196502 1122 CpG island CpG island 15661
Tssr50458 5 29195795 to 29195827 32 - TSS region transcription start site region 50458
Tssr45526 5 29195983 to 29196032 49 + TSS region transcription start site region 45526
Tssr45527 5 29196033 to 29196063 30 + TSS region transcription start site region 45527
Tssr45528 5 29196070 to 29196085 15 + TSS region transcription start site region 45528
Tssr45529 5 29196101 to 29196123 22 + TSS region transcription start site region 45529
Gm7420 5 29217724 to 29218565 841 + pseudogene predicted gene 7420
Tssr45530 5 29223948 to 29223949 1 + TSS region transcription start site region 45530
4921534E14Rik 5 29226289 to 29228456 2167 unclassified gene RIKEN cDNA 4921534E14 gene
Lmbr1 5 29229802 to 29378390 148588 - protein coding gene limb region 1
Gm42244 5 29271762 to 29274134 2372 - lncRNA gene predicted gene, 42244
C79130 5 29276002 to 29280297 4295 - protein coding gene expressed sequence C79130
Gm23801 5 29336780 to 29336846 66 - miRNA gene predicted gene, 23801
Tssr50459 5 29365092 to 29365100 8 - TSS region transcription start site region 50459
Tssr50460 5 29365147 to 29365151 4 - TSS region transcription start site region 50460
D5Jcs62 5 29366546 to 29366696 150 DNA segment DNA segment, Chr 5, John C. Schimenti 62
Cpgi15662 5 29377716 to 29378912 1196 CpG island CpG island 15662
Tssr45531 5 29377774 to 29377810 36 + TSS region transcription start site region 45531
Tssr50461 5 29378319 to 29378335 16 - TSS region transcription start site region 50461
Tssr50462 5 29378337 to 29378401 64 - TSS region transcription start site region 50462
Tssr45532 5 29378604 to 29378607 3 + TSS region transcription start site region 45532
4632411P08Rik 5 29378699 to 29390488 11789 + lincRNA gene RIKEN cDNA 4632411P08 gene
Gm36086 5 29386860 to 29388302 1442 - lncRNA gene predicted gene, 36086
Cpgi15663 5 29434589 to 29435487 898 CpG island CpG island 15663
Nom1 5 29434659 to 29452169 17510 + protein coding gene nucleolar protein with MIF4G domain 1
Tssr45533 5 29434669 to 29434745 76 + TSS region transcription start site region 45533
Cpgi15664 5 29467644 to 29468342 698 CpG island CpG island 15664
Cpgi15665 5 29471188 to 29471450 262 CpG island CpG island 15665
Cpgi15666 5 29473816 to 29475033 1217 CpG island CpG island 15666
Mnx1 5 29473823 to 29478470 4647 - protein coding gene motor neuron and pancreas homeobox 1
Cpgi15667 5 29477397 to 29479016 1619 CpG island CpG island 15667
Tssr50463 5 29478578 to 29478597 19 - TSS region transcription start site region 50463
Tssr50464 5 29478630 to 29478638 8 - TSS region transcription start site region 50464
Gm24538 5 29481525 to 29481631 106 - snRNA gene predicted gene, 24538
Cpgi15668 5 29485494 to 29486048 554 CpG island CpG island 15668
D5Jcs63 5 29524175 to 29524318 143 DNA segment DNA segment, Chr 5, John C. Schimenti 63
Tssr45534 5 29538089 to 29538095 6 + TSS region transcription start site region 45534
Gm6083 5 29538153 to 29538509 356 + pseudogene predicted gene 6083
Cpgi15669 5 29568831 to 29570067 1236 CpG island CpG island 15669
Tssr45535 5 29569208 to 29569267 59 + TSS region transcription start site region 45535
Ube3c 5 29569242 to 29676077 106835 + protein coding gene ubiquitin protein ligase E3C
Tssr45536 5 29569342 to 29569354 12 + TSS region transcription start site region 45536
Tssr45537 5 29569438 to 29569448 10 + TSS region transcription start site region 45537
Tssr45538 5 29569449 to 29569459 10 + TSS region transcription start site region 45538
Tssr45539 5 29569463 to 29569481 18 + TSS region transcription start site region 45539
Tssr45540 5 29569490 to 29569499 9 + TSS region transcription start site region 45540
Tssr45541 5 29569820 to 29569830 10 + TSS region transcription start site region 45541
Tssr45542 5 29569838 to 29569853 15 + TSS region transcription start site region 45542
Tssr45543 5 29587566 to 29587567 1 + TSS region transcription start site region 45543
Tssr50465 5 29609905 to 29609911 6 - TSS region transcription start site region 50465
Tssr1441 5 29636696 to 29636708 12 + TSS region transcription start site region 1441
Tssr45544 5 29658999 to 29659002 3 + TSS region transcription start site region 45544
Tssr45545 5 29676528 to 29676532 4 + TSS region transcription start site region 45545
Gm42245 5 29684782 to 29699989 15207 - lncRNA gene predicted gene, 42245
Gm42570 5 29691422 to 29691713 291 + pseudogene predicted gene 42570
D5Jcs64 5 29693269 to 29693426 157 DNA segment DNA segment, Chr 5, John C. Schimenti 64
Gm26346 5 29709634 to 29709962 328 + unclassified non-coding RNA gene predicted gene, 26346
Gm43117 5 29719328 to 29719706 378 - pseudogene predicted gene 43117
Cpgi15670 5 29735513 to 29736656 1143 CpG island CpG island 15670
Gm5129 5 29735637 to 29735936 299 - unclassified gene predicted gene 5129
Dnajb6 5 29735693 to 29786478 50785 + protein coding gene DnaJ heat shock protein family (Hsp40) member B6
Tssr45546 5 29735725 to 29735737 12 + TSS region transcription start site region 45546
Tssr45547 5 29735739 to 29735751 12 + TSS region transcription start site region 45547
Tssr45548 5 29735822 to 29735831 9 + TSS region transcription start site region 45548
Tssr45549 5 29735837 to 29735850 13 + TSS region transcription start site region 45549
Tssr50466 5 29735883 to 29735893 10 - TSS region transcription start site region 50466
Tssr50467 5 29735902 to 29735925 23 - TSS region transcription start site region 50467
Tssr50468 5 29735928 to 29735945 17 - TSS region transcription start site region 50468
Tssr45550 5 29735967 to 29735989 22 + TSS region transcription start site region 45550
Tssr45551 5 29735991 to 29736011 20 + TSS region transcription start site region 45551
Tssr45552 5 29736112 to 29736140 28 + TSS region transcription start site region 45552
Tssr50469 5 29736412 to 29736428 16 - TSS region transcription start site region 50469
Tssr45553 5 29736451 to 29736460 9 + TSS region transcription start site region 45553
C130031E09Rik 5 29787687 to 29789384 1697 unclassified gene RIKEN cDNA C130031E09 gene
Gm5552 5 29794523 to 29795037 514 - pseudogene predicted gene 5552
Tssr50470 5 29795214 to 29795220 6 - TSS region transcription start site region 50470
Gm2213 5 29807471 to 29808158 687 - pseudogene predicted gene 2213
Gm1969 5 29832088 to 29833307 1219 - pseudogene predicted gene 1969
D5Jcs65 5 29863795 to 29863944 149 DNA segment DNA segment, Chr 5, John C. Schimenti 65
Gm42450 5 29886728 to 29891964 5236 - lincRNA gene predicted gene 42450
Tssr45554 5 29936387 to 29936395 8 + TSS region transcription start site region 45554
Gm43386 5 29946718 to 29950718 4000 - unclassified gene predicted gene 43386
Gm10469 5 29946719 to 29950717 3998 protein coding gene predicted gene 10469
A230098N10Rik 5 29996141 to 30008798 12657 - lincRNA gene RIKEN cDNA A230098N10 gene
Tssr50471 5 30008836 to 30008845 9 - TSS region transcription start site region 50471
D5Mit410 5 30012635 to 30012765 130 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 410
Tssr45555 5 30013084 to 30013089 5 + TSS region transcription start site region 45555
Il6 5 30013114 to 30019975 6861 + protein coding gene interleukin 6
Tssr45556 5 30013141 to 30013143 2 + TSS region transcription start site region 45556
Tssr45557 5 30013272 to 30013277 5 + TSS region transcription start site region 45557
Tssr45558 5 30013280 to 30013323 43 + TSS region transcription start site region 45558
Tssr45559 5 30013333 to 30013373 40 + TSS region transcription start site region 45559
Tssr45560 5 30013383 to 30013395 12 + TSS region transcription start site region 45560
Tssr45561 5 30013558 to 30013564 6 + TSS region transcription start site region 45561
Tssr45562 5 30013795 to 30013805 10 + TSS region transcription start site region 45562
Tssr45563 5 30013834 to 30013846 12 + TSS region transcription start site region 45563
D5Mit44 5 30013860 to 30014133 273 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 44
Tssr45564 5 30013910 to 30013915 5 + TSS region transcription start site region 45564
D5Nds8 5 30013962 to 30014079 117 DNA segment DNA segment, Chr 5, Nuffield Department of Surgery 8
Tssr45565 5 30013970 to 30013979 9 + TSS region transcription start site region 45565
Tssr45566 5 30014088 to 30014105 17 + TSS region transcription start site region 45566
Tssr50472 5 30014190 to 30014194 4 - TSS region transcription start site region 50472
Tssr45567 5 30017928 to 30017932 4 + TSS region transcription start site region 45567
Tssr45568 5 30019546 to 30019556 10 + TSS region transcription start site region 45568
Tssr45569 5 30020855 to 30020858 3 + TSS region transcription start site region 45569
C330025O08Rik 5 30038467 to 30039280 813 unclassified gene RIKEN cDNA C330025O08 gene
Tyms 5 30058202 to 30073617 15415 - protein coding gene thymidylate synthase
D5Mit176 5 30068614 to 30068701 87 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 176
Tssr50473 5 30072364 to 30072368 4 - TSS region transcription start site region 50473
Cpgi15671 5 30073181 to 30073741 560 CpG island CpG island 15671
Tssr50474 5 30073554 to 30073609 55 - TSS region transcription start site region 50474
Gm4961 5 30092940 to 30097686 4746 + pseudogene predicted pseudogene 4961
Gm21019 5 30096038 to 30097262 1224 - pseudogene predicted gene, 21019
3110082J24Rik 5 30103584 to 30106086 2502 - protein coding gene RIKEN cDNA 3110082J24 gene
Cpgi15672 5 30104844 to 30105936 1092 CpG island CpG island 15672
Tssr45570 5 30105177 to 30105219 42 + TSS region transcription start site region 45570
Garem2 5 30105196 to 30118380 13184 + protein coding gene GRB2 associated regulator of MAPK1 subtype 2
Tssr50475 5 30106075 to 30106105 30 - TSS region transcription start site region 50475
Cpgi15673 5 30111196 to 30111480 284 CpG island CpG island 15673
Cpgi15674 5 30113582 to 30115334 1752 CpG island CpG island 15674
Tssr50476 5 30114645 to 30114652 7 - TSS region transcription start site region 50476
Hadha 5 30118304 to 30154980 36676 - protein coding gene hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit
Tssr50477 5 30119794 to 30119810 16 - TSS region transcription start site region 50477
Tssr50478 5 30120225 to 30120238 13 - TSS region transcription start site region 50478
Tssr50479 5 30120771 to 30120785 14 - TSS region transcription start site region 50479
Tssr45571 5 30144225 to 30144249 24 + TSS region transcription start site region 45571
Tssr50480 5 30144259 to 30144308 49 - TSS region transcription start site region 50480
Tssr50481 5 30148016 to 30148025 9 - TSS region transcription start site region 50481
Cpgi15675 5 30154540 to 30155805 1265 CpG island CpG island 15675
Tssr50482 5 30154956 to 30154986 30 - TSS region transcription start site region 50482