Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:27971412-28178662

37 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm17695	5	27951975 to 27977335	25360	+	protein coding gene	predicted gene, 17695
Tssr45508	5	27994468 to 27994474	6	+	TSS region	transcription start site region 45508
Gm4865	5	27999998 to 28001306	1308	-	pseudogene	predicted gene 4865
Gm35223	5	28005942 to 28123931	117989	-	lncRNA gene	predicted gene, 35223
D5Jcs75	5	28017638 to 28017789	151		DNA segment	DNA segment, Chr 5, John C. Schimenti 75
Gm43611	5	28032055 to 28036406	4351	-	unclassified gene	predicted gene 43611
Tssr45509	5	28032093 to 28032111	18	+	TSS region	transcription start site region 45509
Tssr45510	5	28032895 to 28032924	29	+	TSS region	transcription start site region 45510
Gm26608	5	28054947 to 28056032	1085	-	lincRNA gene	predicted gene, 26608
Tssr50431	5	28055440 to 28055464	24	-	TSS region	transcription start site region 50431
Cpgi15643	5	28070689 to 28072148	1459		CpG island	CpG island 15643
Tssr45511	5	28071356 to 28071372	16	+	TSS region	transcription start site region 45511
Insig1	5	28071412 to 28078662	7250	+	protein coding gene	insulin induced gene 1
Tssr45512	5	28078078 to 28078089	11	+	TSS region	transcription start site region 45512
Gm35055	5	28116779 to 28121652	4873	+	lncRNA gene	predicted gene, 35055
Cpgi15644	5	28118013 to 28118855	842		CpG island	CpG island 15644
Cpgi15645	5	28123130 to 28123343	213		CpG island	CpG island 15645
Tssr50432	5	28123648 to 28123660	12	-	TSS region	transcription start site region 50432
Tssr50433	5	28123706 to 28123718	12	-	TSS region	transcription start site region 50433
Tssr50434	5	28124038 to 28124046	8	-	TSS region	transcription start site region 50434
Tssr50435	5	28124051 to 28124064	13	-	TSS region	transcription start site region 50435
Tssr45513	5	28124562 to 28124573	11	+	TSS region	transcription start site region 45513
Cpgi15646	5	28157899 to 28158623	724		CpG island	CpG island 15646
Cpgi15647	5	28159124 to 28159516	392		CpG island	CpG island 15647
Cpgi15648	5	28161739 to 28162489	750		CpG island	CpG island 15648
Cpgi15649	5	28165038 to 28167342	2304		CpG island	CpG island 15649
Tssr45514	5	28165359 to 28165370	11	+	TSS region	transcription start site region 45514
Tssr50436	5	28165463 to 28165474	11	-	TSS region	transcription start site region 50436
Tssr45515	5	28165690 to 28165717	27	+	TSS region	transcription start site region 45515
En2	5	28165696 to 28172166	6470	+	protein coding gene	engrailed 2
Mym	5	28168475 to 28168839	364		unclassified gene	myocyte maintenance
Gm43610	5	28168476 to 28168840	364	-	unclassified gene	predicted gene 43610
Cpgi15650	5	28168601 to 28169165	564		CpG island	CpG island 15650
Cpgi15651	5	28170331 to 28170496	165		CpG island	CpG island 15651
Cpgi15652	5	28170952 to 28171321	369		CpG island	CpG island 15652
Cpgi15653	5	28175374 to 28175551	177		CpG island	CpG island 15653
Gm42242	5	28178207 to 28187954	9747	+	lncRNA gene	predicted gene, 42242