MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 5:27790323-27990618

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19 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Paxip1	5	27740080 to 27791691	51611	-	protein coding gene	PAX interacting (with transcription-activation domain) protein 1
Cpgi15639	5	27790728 to 27792103	1375		CpG island	CpG island 15639
Tssr50426	5	27791340 to 27791420	80	-	TSS region	transcription start site region 50426
Tssr50427	5	27791426 to 27791437	11	-	TSS region	transcription start site region 50427
Tssr50428	5	27791650 to 27791694	44	-	TSS region	transcription start site region 50428
Tssr45505	5	27791723 to 27791753	30	+	TSS region	transcription start site region 45505
Tssr45506	5	27791758 to 27791791	33	+	TSS region	transcription start site region 45506
Gm43433	5	27817490 to 27817970	480	+	pseudogene	predicted gene 43433
Tssr50429	5	27817826 to 27817827	1	-	TSS region	transcription start site region 50429
Gm20239	5	27820970 to 27821951	981	+	pseudogene	predicted gene, 20239
Cpgi15640	5	27841656 to 27842090	434		CpG island	CpG island 15640
Htr5a	5	27842149 to 27855088	12939	+	protein coding gene	5-hydroxytryptamine (serotonin) receptor 5A
Cpgi15641	5	27842519 to 27843161	642		CpG island	CpG island 15641
Gm43096	5	27860018 to 27860438	420	-	pseudogene	predicted gene 43096
Gm5551	5	27860449 to 27861138	689	+	pseudogene	predicted gene 5551
Cpgi15642	5	27890323 to 27890618	295		CpG island	CpG island 15642
Tssr50430	5	27919264 to 27919287	23	-	TSS region	transcription start site region 50430
Gm17695	5	27951975 to 27977335	25360	+	protein coding gene	predicted gene, 17695
Tssr45507	5	27952007 to 27952050	43	+	TSS region	transcription start site region 45507