Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:27375575-28115581

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dpp6 5 26817357 to 27727500 910143 + protein coding gene dipeptidylpeptidase 6
Tssr45502 5 27382764 to 27382768 4 + TSS region transcription start site region 45502
D5Jcs73 5 27484699 to 27484849 150 DNA segment DNA segment, Chr 5, John C. Schimenti 73
Speer4b 5 27495809 to 27501392 5583 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 4B
Tssr1440 5 27537847 to 27537881 34 + TSS region transcription start site region 1440
D5Jcs74 5 27540150 to 27540291 141 DNA segment DNA segment, Chr 5, John C. Schimenti 74
Gm16058 5 27552551 to 27553875 1324 - antisense lncRNA gene predicted gene 16058
Tssr45503 5 27598883 to 27598885 2 + TSS region transcription start site region 45503
Tssr45504 5 27709422 to 27709443 21 + TSS region transcription start site region 45504
D5Mit386 5 27722228 to 27722340 112 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 386
Paxip1 5 27740080 to 27791691 51611 - protein coding gene PAX interacting (with transcription-activation domain) protein 1
Tssr50425 5 27745575 to 27745581 6 - TSS region transcription start site region 50425
Cpgi15639 5 27790728 to 27792103 1375 CpG island CpG island 15639
Tssr50426 5 27791340 to 27791420 80 - TSS region transcription start site region 50426
Tssr50427 5 27791426 to 27791437 11 - TSS region transcription start site region 50427
Tssr50428 5 27791650 to 27791694 44 - TSS region transcription start site region 50428
Tssr45505 5 27791723 to 27791753 30 + TSS region transcription start site region 45505
Tssr45506 5 27791758 to 27791791 33 + TSS region transcription start site region 45506
Gm43433 5 27817490 to 27817970 480 + pseudogene predicted gene 43433
Tssr50429 5 27817826 to 27817827 1 - TSS region transcription start site region 50429
Gm20239 5 27820970 to 27821951 981 + pseudogene predicted gene, 20239
Cpgi15640 5 27841656 to 27842090 434 CpG island CpG island 15640
Htr5a 5 27842149 to 27855088 12939 + protein coding gene 5-hydroxytryptamine (serotonin) receptor 5A
Cpgi15641 5 27842519 to 27843161 642 CpG island CpG island 15641
Gm43096 5 27860018 to 27860438 420 - pseudogene predicted gene 43096
Gm5551 5 27860449 to 27861138 689 + pseudogene predicted gene 5551
Cpgi15642 5 27890323 to 27890618 295 CpG island CpG island 15642
Tssr50430 5 27919264 to 27919287 23 - TSS region transcription start site region 50430
Gm17695 5 27951975 to 27977335 25360 + protein coding gene predicted gene, 17695
Tssr45507 5 27952007 to 27952050 43 + TSS region transcription start site region 45507
Tssr45508 5 27994468 to 27994474 6 + TSS region transcription start site region 45508
Gm4865 5 27999998 to 28001306 1308 - pseudogene predicted gene 4865
Gm35223 5 28005942 to 28123931 117989 - lncRNA gene predicted gene, 35223
D5Jcs75 5 28017638 to 28017789 151 DNA segment DNA segment, Chr 5, John C. Schimenti 75
Gm43611 5 28032055 to 28036406 4351 - unclassified gene predicted gene 43611
Tssr45509 5 28032093 to 28032111 18 + TSS region transcription start site region 45509
Tssr45510 5 28032895 to 28032924 29 + TSS region transcription start site region 45510
Gm26608 5 28054947 to 28056032 1085 - lincRNA gene predicted gene, 26608
Tssr50431 5 28055440 to 28055464 24 - TSS region transcription start site region 50431
Cpgi15643 5 28070689 to 28072148 1459 CpG island CpG island 15643
Tssr45511 5 28071356 to 28071372 16 + TSS region transcription start site region 45511
Insig1 5 28071412 to 28078662 7250 + protein coding gene insulin induced gene 1
Tssr45512 5 28078078 to 28078089 11 + TSS region transcription start site region 45512