Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:26295955-28098868

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm18957 5 26355418 to 26357230 1812 + pseudogene predicted gene, 18957
Gm34536 5 26389284 to 26403860 14576 + lncRNA gene predicted gene, 34536
4930584F24Rik 5 26460070 to 26493314 33244 - lincRNA gene RIKEN cDNA 4930584F24 gene
Tssr50420 5 26492323 to 26492334 11 - TSS region transcription start site region 50420
Tssr50421 5 26493277 to 26493282 5 - TSS region transcription start site region 50421
Tssr50422 5 26493283 to 26493294 11 - TSS region transcription start site region 50422
Tssr50423 5 26493308 to 26493318 10 - TSS region transcription start site region 50423
Gm42844 5 26599438 to 26599549 111 + pseudogene predicted gene 42844
D5Mit73 5 26600987 to 26601099 112 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 73
Del(5D5Mit73-D5Mit351)1J 5 26600987 to 37019120 10418133 chromosomal deletion deletion Chr 5, Jackson 1
Del(5D5Mit73-D5Mit351)5Jcs 5 26600987 to 37019120 10418133 chromosomal deletion deletion, Chr 5, John C. Schimenti 5
D5Mit124 5 26672892 to 26673086 194 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 124
Cpgi15634 5 26742051 to 26742311 260 CpG island CpG island 15634
Cpgi15635 5 26817064 to 26818005 941 CpG island CpG island 15635
Dpp6 5 26817357 to 27727500 910143 + protein coding gene dipeptidylpeptidase 6
Tssr45480 5 26817409 to 26817428 19 + TSS region transcription start site region 45480
Gm29784 5 26828100 to 26828505 405 - pseudogene predicted gene, 29784
Gm16056 5 26859967 to 26860101 134 - pseudogene predicted gene 16056
Tssr45481 5 26881533 to 26881534 1 + TSS region transcription start site region 45481
Tssr45482 5 26904457 to 26904481 24 + TSS region transcription start site region 45482
Tssr45483 5 26904628 to 26904671 43 + TSS region transcription start site region 45483
Cpgi15636 5 26904668 to 26905037 369 CpG island CpG island 15636
Tssr45484 5 26904682 to 26904710 28 + TSS region transcription start site region 45484
Tssr45485 5 26904824 to 26904875 51 + TSS region transcription start site region 45485
Tssr45486 5 26904896 to 26904914 18 + TSS region transcription start site region 45486
D5Mit1004 5 26926291 to 26926433 142 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1004
Gm46944 5 26951145 to 26967885 16740 - lncRNA gene predicted gene, 46944
D5Mit251 5 26955395 to 26955532 137 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 251
Gm16057 5 27005940 to 27007621 1681 - pseudogene predicted gene 16057
Cpgi15637 5 27049161 to 27050053 892 CpG island CpG island 15637
Tssr45487 5 27049369 to 27049424 55 + TSS region transcription start site region 45487
Tssr45488 5 27049544 to 27049572 28 + TSS region transcription start site region 45488
D5Jcs89 5 27051293 to 27051446 153 DNA segment DNA segment, Chr 5, John C. Schimenti 89
Tssr45489 5 27057839 to 27057847 8 + TSS region transcription start site region 45489
Tssr45490 5 27072649 to 27072673 24 + TSS region transcription start site region 45490
Tssr45491 5 27111381 to 27111395 14 + TSS region transcription start site region 45491
Tssr50424 5 27139126 to 27139161 35 - TSS region transcription start site region 50424
Tssr45492 5 27160626 to 27160639 13 + TSS region transcription start site region 45492
Tssr45493 5 27181456 to 27181459 3 + TSS region transcription start site region 45493
Gm43776 5 27195955 to 27198868 2913 + unclassified gene predicted gene 43776
Gm43502 5 27218185 to 27220780 2595 + unclassified gene predicted gene 43502
Cpgi15638 5 27261754 to 27262120 366 CpG island CpG island 15638
Tssr45494 5 27261916 to 27261980 64 + TSS region transcription start site region 45494
Tssr45495 5 27261981 to 27262003 22 + TSS region transcription start site region 45495
Tssr45496 5 27262016 to 27262031 15 + TSS region transcription start site region 45496
Tssr45497 5 27262048 to 27262064 16 + TSS region transcription start site region 45497
Tssr45498 5 27262068 to 27262125 57 + TSS region transcription start site region 45498
Tssr45499 5 27262200 to 27262210 10 + TSS region transcription start site region 45499
Tssr45500 5 27262222 to 27262236 14 + TSS region transcription start site region 45500
Tssr45501 5 27262256 to 27262261 5 + TSS region transcription start site region 45501
Gm34600 5 27281438 to 27284360 2922 - lncRNA gene predicted gene, 34600
Tssr45502 5 27382764 to 27382768 4 + TSS region transcription start site region 45502
D5Jcs73 5 27484699 to 27484849 150 DNA segment DNA segment, Chr 5, John C. Schimenti 73
Speer4b 5 27495809 to 27501392 5583 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 4B
Tssr1440 5 27537847 to 27537881 34 + TSS region transcription start site region 1440
D5Jcs74 5 27540150 to 27540291 141 DNA segment DNA segment, Chr 5, John C. Schimenti 74
Gm16058 5 27552551 to 27553875 1324 - antisense lncRNA gene predicted gene 16058
Tssr45503 5 27598883 to 27598885 2 + TSS region transcription start site region 45503
Tssr45504 5 27709422 to 27709443 21 + TSS region transcription start site region 45504
D5Mit386 5 27722228 to 27722340 112 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 386
Paxip1 5 27740080 to 27791691 51611 - protein coding gene PAX interacting (with transcription-activation domain) protein 1
Tssr50425 5 27745575 to 27745581 6 - TSS region transcription start site region 50425
Cpgi15639 5 27790728 to 27792103 1375 CpG island CpG island 15639
Tssr50426 5 27791340 to 27791420 80 - TSS region transcription start site region 50426
Tssr50427 5 27791426 to 27791437 11 - TSS region transcription start site region 50427
Tssr50428 5 27791650 to 27791694 44 - TSS region transcription start site region 50428
Tssr45505 5 27791723 to 27791753 30 + TSS region transcription start site region 45505
Tssr45506 5 27791758 to 27791791 33 + TSS region transcription start site region 45506
Gm43433 5 27817490 to 27817970 480 + pseudogene predicted gene 43433
Tssr50429 5 27817826 to 27817827 1 - TSS region transcription start site region 50429
Gm20239 5 27820970 to 27821951 981 + pseudogene predicted gene, 20239
Cpgi15640 5 27841656 to 27842090 434 CpG island CpG island 15640
Htr5a 5 27842149 to 27855088 12939 + protein coding gene 5-hydroxytryptamine (serotonin) receptor 5A
Cpgi15641 5 27842519 to 27843161 642 CpG island CpG island 15641
Gm43096 5 27860018 to 27860438 420 - pseudogene predicted gene 43096
Gm5551 5 27860449 to 27861138 689 + pseudogene predicted gene 5551
Cpgi15642 5 27890323 to 27890618 295 CpG island CpG island 15642
Tssr50430 5 27919264 to 27919287 23 - TSS region transcription start site region 50430
Gm17695 5 27951975 to 27977335 25360 + protein coding gene predicted gene, 17695
Tssr45507 5 27952007 to 27952050 43 + TSS region transcription start site region 45507
Tssr45508 5 27994468 to 27994474 6 + TSS region transcription start site region 45508
Gm4865 5 27999998 to 28001306 1308 - pseudogene predicted gene 4865
Gm35223 5 28005942 to 28123931 117989 - lncRNA gene predicted gene, 35223
D5Jcs75 5 28017638 to 28017789 151 DNA segment DNA segment, Chr 5, John C. Schimenti 75
Gm43611 5 28032055 to 28036406 4351 - unclassified gene predicted gene 43611
Tssr45509 5 28032093 to 28032111 18 + TSS region transcription start site region 45509
Tssr45510 5 28032895 to 28032924 29 + TSS region transcription start site region 45510
Gm26608 5 28054947 to 28056032 1085 - lincRNA gene predicted gene, 26608
Tssr50431 5 28055440 to 28055464 24 - TSS region transcription start site region 50431
Cpgi15643 5 28070689 to 28072148 1459 CpG island CpG island 15643
Tssr45511 5 28071356 to 28071372 16 + TSS region transcription start site region 45511
Insig1 5 28071412 to 28078662 7250 + protein coding gene insulin induced gene 1
Tssr45512 5 28078078 to 28078089 11 + TSS region transcription start site region 45512