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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:26164628-27644671

Filter by:
63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm34067 5 26142867 to 26166842 23975 + lncRNA gene predicted gene, 34067
D5Jcs61 5 26165382 to 26165520 138 DNA segment DNA segment, Chr 5, John C. Schimenti 61
D5Mit125 5 26236236 to 26236380 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 125
Gm7361 5 26257691 to 26264308 6617 + protein coding gene predicted gene 7361
Gm18957 5 26355418 to 26357230 1812 + pseudogene predicted gene, 18957
Gm34536 5 26389284 to 26403860 14576 + lncRNA gene predicted gene, 34536
4930584F24Rik 5 26460070 to 26493314 33244 - lincRNA gene RIKEN cDNA 4930584F24 gene
Tssr50420 5 26492323 to 26492334 11 - TSS region transcription start site region 50420
Tssr50421 5 26493277 to 26493282 5 - TSS region transcription start site region 50421
Tssr50422 5 26493283 to 26493294 11 - TSS region transcription start site region 50422
Tssr50423 5 26493308 to 26493318 10 - TSS region transcription start site region 50423
Gm42844 5 26599438 to 26599549 111 + pseudogene predicted gene 42844
D5Mit73 5 26600987 to 26601099 112 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 73
Del(5D5Mit73-D5Mit351)1J 5 26600987 to 37019120 10418133 chromosomal deletion deletion Chr 5, Jackson 1
Del(5D5Mit73-D5Mit351)5Jcs 5 26600987 to 37019120 10418133 chromosomal deletion deletion, Chr 5, John C. Schimenti 5
D5Mit124 5 26672892 to 26673086 194 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 124
Cpgi15634 5 26742051 to 26742311 260 CpG island CpG island 15634
Cpgi15635 5 26817064 to 26818005 941 CpG island CpG island 15635
Dpp6 5 26817357 to 27727500 910143 + protein coding gene dipeptidylpeptidase 6
Tssr45480 5 26817409 to 26817428 19 + TSS region transcription start site region 45480
Gm29784 5 26828100 to 26828505 405 - pseudogene predicted gene, 29784
Gm16056 5 26859967 to 26860101 134 - pseudogene predicted gene 16056
Tssr45481 5 26881533 to 26881534 1 + TSS region transcription start site region 45481
Tssr45482 5 26904457 to 26904481 24 + TSS region transcription start site region 45482
Tssr45483 5 26904628 to 26904671 43 + TSS region transcription start site region 45483
Cpgi15636 5 26904668 to 26905037 369 CpG island CpG island 15636
Tssr45484 5 26904682 to 26904710 28 + TSS region transcription start site region 45484
Tssr45485 5 26904824 to 26904875 51 + TSS region transcription start site region 45485
Tssr45486 5 26904896 to 26904914 18 + TSS region transcription start site region 45486
D5Mit1004 5 26926291 to 26926433 142 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1004
Gm46944 5 26951145 to 26967885 16740 - lncRNA gene predicted gene, 46944
D5Mit251 5 26955395 to 26955532 137 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 251
Gm16057 5 27005940 to 27007621 1681 - pseudogene predicted gene 16057
Cpgi15637 5 27049161 to 27050053 892 CpG island CpG island 15637
Tssr45487 5 27049369 to 27049424 55 + TSS region transcription start site region 45487
Tssr45488 5 27049544 to 27049572 28 + TSS region transcription start site region 45488
D5Jcs89 5 27051293 to 27051446 153 DNA segment DNA segment, Chr 5, John C. Schimenti 89
Tssr45489 5 27057839 to 27057847 8 + TSS region transcription start site region 45489
Tssr45490 5 27072649 to 27072673 24 + TSS region transcription start site region 45490
Tssr45491 5 27111381 to 27111395 14 + TSS region transcription start site region 45491
Tssr50424 5 27139126 to 27139161 35 - TSS region transcription start site region 50424
Tssr45492 5 27160626 to 27160639 13 + TSS region transcription start site region 45492
Tssr45493 5 27181456 to 27181459 3 + TSS region transcription start site region 45493
Gm43776 5 27195955 to 27198868 2913 + unclassified gene predicted gene 43776
Gm43502 5 27218185 to 27220780 2595 + unclassified gene predicted gene 43502
Cpgi15638 5 27261754 to 27262120 366 CpG island CpG island 15638
Tssr45494 5 27261916 to 27261980 64 + TSS region transcription start site region 45494
Tssr45495 5 27261981 to 27262003 22 + TSS region transcription start site region 45495
Tssr45496 5 27262016 to 27262031 15 + TSS region transcription start site region 45496
Tssr45497 5 27262048 to 27262064 16 + TSS region transcription start site region 45497
Tssr45498 5 27262068 to 27262125 57 + TSS region transcription start site region 45498
Tssr45499 5 27262200 to 27262210 10 + TSS region transcription start site region 45499
Tssr45500 5 27262222 to 27262236 14 + TSS region transcription start site region 45500
Tssr45501 5 27262256 to 27262261 5 + TSS region transcription start site region 45501
Gm34600 5 27281438 to 27284360 2922 - lncRNA gene predicted gene, 34600
Tssr45502 5 27382764 to 27382768 4 + TSS region transcription start site region 45502
D5Jcs73 5 27484699 to 27484849 150 DNA segment DNA segment, Chr 5, John C. Schimenti 73
Speer4b 5 27495809 to 27501392 5583 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 4B
Tssr1440 5 27537847 to 27537881 34 + TSS region transcription start site region 1440
D5Jcs74 5 27540150 to 27540291 141 DNA segment DNA segment, Chr 5, John C. Schimenti 74
Gm16058 5 27552551 to 27553875 1324 - antisense lncRNA gene predicted gene 16058
Tssr45503 5 27598883 to 27598885 2 + TSS region transcription start site region 45503
Rvfs3 5 138457140 to 26236236 -112220904 QTL Rift Valley fever susceptibility 3