Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:26065955-28328868

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157 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
E330037M01Rik 5 25963847 to 26098363 134516 unclassified gene RIKEN cDNA E330037M01 gene
Gm6089 5 26070537 to 26071474 937 + pseudogene predicted gene 6089
Gm10471 5 26082574 to 26089291 6717 - protein coding gene predicted gene 10471
5031410I06Rik 5 26098668 to 26105314 6646 - protein coding gene RIKEN cDNA 5031410I06 gene
Gm46905 5 26104162 to 26109638 5476 + lncRNA gene predicted gene, 46905
Gm10220 5 26114764 to 26121421 6657 - protein coding gene predicted gene 10220
Gm46906 5 26120144 to 26124267 4123 + lncRNA gene predicted gene, 46906
Gm34067 5 26142867 to 26166842 23975 + lncRNA gene predicted gene, 34067
D5Jcs61 5 26165382 to 26165520 138 DNA segment DNA segment, Chr 5, John C. Schimenti 61
D5Mit125 5 26236236 to 26236380 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 125
Gm7361 5 26257691 to 26264308 6617 + protein coding gene predicted gene 7361
Gm18957 5 26355418 to 26357230 1812 + pseudogene predicted gene, 18957
Gm34536 5 26389284 to 26403860 14576 + lncRNA gene predicted gene, 34536
4930584F24Rik 5 26460070 to 26493314 33244 - lincRNA gene RIKEN cDNA 4930584F24 gene
Tssr50420 5 26492323 to 26492334 11 - TSS region transcription start site region 50420
Tssr50421 5 26493277 to 26493282 5 - TSS region transcription start site region 50421
Tssr50422 5 26493283 to 26493294 11 - TSS region transcription start site region 50422
Tssr50423 5 26493308 to 26493318 10 - TSS region transcription start site region 50423
Gm42844 5 26599438 to 26599549 111 + pseudogene predicted gene 42844
Del(5D5Mit73-D5Mit351)5Jcs 5 26600987 to 37019120 10418133 chromosomal deletion deletion, Chr 5, John C. Schimenti 5
D5Mit73 5 26600987 to 26601099 112 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 73
Del(5D5Mit73-D5Mit351)1J 5 26600987 to 37019120 10418133 chromosomal deletion deletion Chr 5, Jackson 1
D5Mit124 5 26672892 to 26673086 194 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 124
Cpgi15634 5 26742051 to 26742311 260 CpG island CpG island 15634
Cpgi15635 5 26817064 to 26818005 941 CpG island CpG island 15635
Dpp6 5 26817357 to 27727500 910143 + protein coding gene dipeptidylpeptidase 6
Tssr45480 5 26817409 to 26817428 19 + TSS region transcription start site region 45480
Gm29784 5 26828100 to 26828505 405 - pseudogene predicted gene, 29784
Gm16056 5 26859967 to 26860101 134 - pseudogene predicted gene 16056
Tssr45481 5 26881533 to 26881534 1 + TSS region transcription start site region 45481
Tssr45482 5 26904457 to 26904481 24 + TSS region transcription start site region 45482
Tssr45483 5 26904628 to 26904671 43 + TSS region transcription start site region 45483
Cpgi15636 5 26904668 to 26905037 369 CpG island CpG island 15636
Tssr45484 5 26904682 to 26904710 28 + TSS region transcription start site region 45484
Tssr45485 5 26904824 to 26904875 51 + TSS region transcription start site region 45485
Tssr45486 5 26904896 to 26904914 18 + TSS region transcription start site region 45486
D5Mit1004 5 26926291 to 26926433 142 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 1004
Gm46944 5 26951145 to 26967885 16740 - lncRNA gene predicted gene, 46944
D5Mit251 5 26955395 to 26955532 137 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 251
Gm16057 5 27005940 to 27007621 1681 - pseudogene predicted gene 16057
Cpgi15637 5 27049161 to 27050053 892 CpG island CpG island 15637
Tssr45487 5 27049369 to 27049424 55 + TSS region transcription start site region 45487
Tssr45488 5 27049544 to 27049572 28 + TSS region transcription start site region 45488
D5Jcs89 5 27051293 to 27051446 153 DNA segment DNA segment, Chr 5, John C. Schimenti 89
Tssr45489 5 27057839 to 27057847 8 + TSS region transcription start site region 45489
Tssr45490 5 27072649 to 27072673 24 + TSS region transcription start site region 45490
Tssr45491 5 27111381 to 27111395 14 + TSS region transcription start site region 45491
Tssr50424 5 27139126 to 27139161 35 - TSS region transcription start site region 50424
Tssr45492 5 27160626 to 27160639 13 + TSS region transcription start site region 45492
Tssr45493 5 27181456 to 27181459 3 + TSS region transcription start site region 45493
Gm43776 5 27195955 to 27198868 2913 + unclassified gene predicted gene 43776
Gm43502 5 27218185 to 27220780 2595 + unclassified gene predicted gene 43502
Cpgi15638 5 27261754 to 27262120 366 CpG island CpG island 15638
Tssr45494 5 27261916 to 27261980 64 + TSS region transcription start site region 45494
Tssr45495 5 27261981 to 27262003 22 + TSS region transcription start site region 45495
Tssr45496 5 27262016 to 27262031 15 + TSS region transcription start site region 45496
Tssr45497 5 27262048 to 27262064 16 + TSS region transcription start site region 45497
Tssr45498 5 27262068 to 27262125 57 + TSS region transcription start site region 45498
Tssr45499 5 27262200 to 27262210 10 + TSS region transcription start site region 45499
Tssr45500 5 27262222 to 27262236 14 + TSS region transcription start site region 45500
Tssr45501 5 27262256 to 27262261 5 + TSS region transcription start site region 45501
Gm34600 5 27281438 to 27284360 2922 - lncRNA gene predicted gene, 34600
Tssr45502 5 27382764 to 27382768 4 + TSS region transcription start site region 45502
D5Jcs73 5 27484699 to 27484849 150 DNA segment DNA segment, Chr 5, John C. Schimenti 73
Speer4b 5 27495809 to 27501392 5583 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 4B
Tssr1440 5 27537847 to 27537881 34 + TSS region transcription start site region 1440
D5Jcs74 5 27540150 to 27540291 141 DNA segment DNA segment, Chr 5, John C. Schimenti 74
Gm16058 5 27552551 to 27553875 1324 - antisense lncRNA gene predicted gene 16058
Tssr45503 5 27598883 to 27598885 2 + TSS region transcription start site region 45503
Tssr45504 5 27709422 to 27709443 21 + TSS region transcription start site region 45504
D5Mit386 5 27722228 to 27722340 112 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 386
Paxip1 5 27740080 to 27791691 51611 - protein coding gene PAX interacting (with transcription-activation domain) protein 1
Tssr50425 5 27745575 to 27745581 6 - TSS region transcription start site region 50425
Cpgi15639 5 27790728 to 27792103 1375 CpG island CpG island 15639
Tssr50426 5 27791340 to 27791420 80 - TSS region transcription start site region 50426
Tssr50427 5 27791426 to 27791437 11 - TSS region transcription start site region 50427
Tssr50428 5 27791650 to 27791694 44 - TSS region transcription start site region 50428
Tssr45505 5 27791723 to 27791753 30 + TSS region transcription start site region 45505
Tssr45506 5 27791758 to 27791791 33 + TSS region transcription start site region 45506
Gm43433 5 27817490 to 27817970 480 + pseudogene predicted gene 43433
Tssr50429 5 27817826 to 27817827 1 - TSS region transcription start site region 50429
Gm20239 5 27820970 to 27821951 981 + pseudogene predicted gene, 20239
Cpgi15640 5 27841656 to 27842090 434 CpG island CpG island 15640
Htr5a 5 27842149 to 27855088 12939 + protein coding gene 5-hydroxytryptamine (serotonin) receptor 5A
Cpgi15641 5 27842519 to 27843161 642 CpG island CpG island 15641
Gm43096 5 27860018 to 27860438 420 - pseudogene predicted gene 43096
Gm5551 5 27860449 to 27861138 689 + pseudogene predicted gene 5551
Cpgi15642 5 27890323 to 27890618 295 CpG island CpG island 15642
Tssr50430 5 27919264 to 27919287 23 - TSS region transcription start site region 50430
Gm17695 5 27951975 to 27977335 25360 + protein coding gene predicted gene, 17695
Tssr45507 5 27952007 to 27952050 43 + TSS region transcription start site region 45507
Tssr45508 5 27994468 to 27994474 6 + TSS region transcription start site region 45508
Gm4865 5 27999998 to 28001306 1308 - pseudogene predicted gene 4865
Gm35223 5 28005942 to 28123931 117989 - lncRNA gene predicted gene, 35223
D5Jcs75 5 28017638 to 28017789 151 DNA segment DNA segment, Chr 5, John C. Schimenti 75
Gm43611 5 28032055 to 28036406 4351 - unclassified gene predicted gene 43611
Tssr45509 5 28032093 to 28032111 18 + TSS region transcription start site region 45509
Tssr45510 5 28032895 to 28032924 29 + TSS region transcription start site region 45510
Gm26608 5 28054947 to 28056032 1085 - lincRNA gene predicted gene, 26608
Tssr50431 5 28055440 to 28055464 24 - TSS region transcription start site region 50431
Cpgi15643 5 28070689 to 28072148 1459 CpG island CpG island 15643
Tssr45511 5 28071356 to 28071372 16 + TSS region transcription start site region 45511
Insig1 5 28071412 to 28078662 7250 + protein coding gene insulin induced gene 1
Tssr45512 5 28078078 to 28078089 11 + TSS region transcription start site region 45512
Gm35055 5 28116779 to 28121652 4873 + lncRNA gene predicted gene, 35055
Cpgi15644 5 28118013 to 28118855 842 CpG island CpG island 15644
Cpgi15645 5 28123130 to 28123343 213 CpG island CpG island 15645
Tssr50432 5 28123648 to 28123660 12 - TSS region transcription start site region 50432
Tssr50433 5 28123706 to 28123718 12 - TSS region transcription start site region 50433
Tssr50434 5 28124038 to 28124046 8 - TSS region transcription start site region 50434
Tssr50435 5 28124051 to 28124064 13 - TSS region transcription start site region 50435
Tssr45513 5 28124562 to 28124573 11 + TSS region transcription start site region 45513
Cpgi15646 5 28157899 to 28158623 724 CpG island CpG island 15646
Cpgi15647 5 28159124 to 28159516 392 CpG island CpG island 15647
Cpgi15648 5 28161739 to 28162489 750 CpG island CpG island 15648
Cpgi15649 5 28165038 to 28167342 2304 CpG island CpG island 15649
Tssr45514 5 28165359 to 28165370 11 + TSS region transcription start site region 45514
Tssr50436 5 28165463 to 28165474 11 - TSS region transcription start site region 50436
Tssr45515 5 28165690 to 28165717 27 + TSS region transcription start site region 45515
En2 5 28165696 to 28172166 6470 + protein coding gene engrailed 2
Mym 5 28168475 to 28168839 364 unclassified gene myocyte maintenance
Gm43610 5 28168476 to 28168840 364 - unclassified gene predicted gene 43610
Cpgi15650 5 28168601 to 28169165 564 CpG island CpG island 15650
Cpgi15651 5 28170331 to 28170496 165 CpG island CpG island 15651
Cpgi15652 5 28170952 to 28171321 369 CpG island CpG island 15652
Cpgi15653 5 28175374 to 28175551 177 CpG island CpG island 15653
Gm42242 5 28178207 to 28187954 9747 + lncRNA gene predicted gene, 42242
Gm35395 5 28189566 to 28200736 11170 + lncRNA gene predicted gene, 35395
Cnpy1 5 28200819 to 28245788 44969 - protein coding gene canopy FGF signaling regulator 1
Cpgi15654 5 28209265 to 28210478 1213 CpG island CpG island 15654
Tssr50437 5 28209747 to 28209764 17 - TSS region transcription start site region 50437
Tssr50438 5 28209818 to 28209829 11 - TSS region transcription start site region 50438
Tssr50439 5 28209843 to 28209862 19 - TSS region transcription start site region 50439
Tssr50440 5 28209904 to 28209914 10 - TSS region transcription start site region 50440
Tssr50441 5 28209916 to 28209935 19 - TSS region transcription start site region 50441
Tssr50442 5 28209961 to 28209979 18 - TSS region transcription start site region 50442
Tssr50443 5 28210031 to 28210034 3 - TSS region transcription start site region 50443
Tssr50444 5 28210047 to 28210055 8 - TSS region transcription start site region 50444
Tssr50445 5 28210067 to 28210082 15 - TSS region transcription start site region 50445
Tssr50446 5 28210087 to 28210100 13 - TSS region transcription start site region 50446
Tssr45516 5 28210122 to 28210133 11 + TSS region transcription start site region 45516
Tssr50447 5 28210170 to 28210179 9 - TSS region transcription start site region 50447
Tssr50448 5 28210392 to 28210396 4 - TSS region transcription start site region 50448
Tssr50449 5 28210398 to 28210405 7 - TSS region transcription start site region 50449
Tssr50450 5 28210414 to 28210428 14 - TSS region transcription start site region 50450
Tssr50451 5 28237879 to 28237888 9 - TSS region transcription start site region 50451
Gm35524 5 28289690 to 28293353 3663 - lncRNA gene predicted gene, 35524
Gm35602 5 28297370 to 28316726 19356 - lncRNA gene predicted gene, 35602
Cpgi15655 5 28316502 to 28317748 1246 CpG island CpG island 15655
Tssr45517 5 28316844 to 28316920 76 + TSS region transcription start site region 45517
Tssr45518 5 28316928 to 28317008 80 + TSS region transcription start site region 45518
Rbm33 5 28317121 to 28419239 102118 + protein coding gene RNA binding motif protein 33
Tssr45519 5 28317153 to 28317220 67 + TSS region transcription start site region 45519
Tssr45520 5 28317886 to 28317890 4 + TSS region transcription start site region 45520
B930032E21Rik 5 28322471 to 28327016 4545 unclassified gene RIKEN cDNA B930032E21 gene
Tssr45521 5 28324442 to 28324446 4 + TSS region transcription start site region 45521
Rvfs3 5 138457140 to 26236236 -112220904 QTL Rift Valley fever susceptibility 3