Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:25742691-26779308

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr45473 5 25753580 to 25753595 15 + TSS region transcription start site region 45473
Cpgi15631 5 25759812 to 25760732 920 CpG island CpG island 15631
Tssr45474 5 25759940 to 25759984 44 + TSS region transcription start site region 45474
Tssr45475 5 25759987 to 25760044 57 + TSS region transcription start site region 45475
Actr3b 5 25759997 to 25850688 90691 + protein coding gene ARP3 actin-related protein 3B
Gm42237 5 25767701 to 25777312 9611 + lncRNA gene predicted gene, 42237
Tssr45476 5 25768502 to 25768515 13 + TSS region transcription start site region 45476
Cpgi15632 5 25768785 to 25769232 447 CpG island CpG island 15632
Tssr45477 5 25774965 to 25774968 3 + TSS region transcription start site region 45477
Tssr45478 5 25848310 to 25848325 15 + TSS region transcription start site region 45478
Tssr45479 5 25848355 to 25848364 9 + TSS region transcription start site region 45479
D5Mit170 5 25874907 to 25875050 143 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 170
Gm21655 5 25919861 to 25926215 6354 - unclassified non-coding RNA gene predicted gene, 21655
Gm21663 5 25936984 to 25942530 5546 - protein coding gene predicted gene, 21663
Gm21671 5 25949797 to 25954344 4547 - protein coding gene predicted gene, 21671
Gm21168 5 25956626 to 25957721 1095 + pseudogene predicted gene, 21168
E330037M01Rik 5 25963847 to 26098363 134516 unclassified gene RIKEN cDNA E330037M01 gene
Gm21680 5 25965961 to 25972663 6702 - protein coding gene predicted gene, 21680
Gm46904 5 25969093 to 25974592 5499 + lncRNA gene predicted gene, 46904
Gm21698 5 25982026 to 25988579 6553 - protein coding gene predicted gene, 21698
Gm1979 5 26000172 to 26004727 4555 - protein coding gene predicted gene 1979
Cpgi15633 5 26006874 to 26007722 848 CpG island CpG island 15633
Gm5067 5 26007027 to 26008035 1008 + pseudogene predicted gene 5067
Tssr164687 5 26007241 to 26007267 26 + TSS region transcription start site region 164687
Tssr164688 5 26007455 to 26007467 12 + TSS region transcription start site region 164688
Tssr164689 5 26007671 to 26007701 30 + TSS region transcription start site region 164689
Gm5862 5 26018421 to 26022891 4470 - protein coding gene predicted gene 5862
Speer4a 5 26034270 to 26039505 5235 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 4A
Gm7347 5 26053137 to 26058538 5401 - protein coding gene predicted gene 7347
Gm6089 5 26070537 to 26071474 937 + pseudogene predicted gene 6089
Gm10471 5 26082574 to 26089291 6717 - protein coding gene predicted gene 10471
5031410I06Rik 5 26098668 to 26105314 6646 - protein coding gene RIKEN cDNA 5031410I06 gene
Gm46905 5 26104162 to 26109638 5476 + lncRNA gene predicted gene, 46905
Gm10220 5 26114764 to 26121421 6657 - protein coding gene predicted gene 10220
Gm46906 5 26120144 to 26124267 4123 + lncRNA gene predicted gene, 46906
Gm34067 5 26142867 to 26166842 23975 + lncRNA gene predicted gene, 34067
D5Jcs61 5 26165382 to 26165520 138 DNA segment DNA segment, Chr 5, John C. Schimenti 61
D5Mit125 5 26236236 to 26236380 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 125
Gm7361 5 26257691 to 26264308 6617 + protein coding gene predicted gene 7361
Gm18957 5 26355418 to 26357230 1812 + pseudogene predicted gene, 18957
Gm34536 5 26389284 to 26403860 14576 + lncRNA gene predicted gene, 34536
4930584F24Rik 5 26460070 to 26493314 33244 - lincRNA gene RIKEN cDNA 4930584F24 gene
Tssr50420 5 26492323 to 26492334 11 - TSS region transcription start site region 50420
Tssr50421 5 26493277 to 26493282 5 - TSS region transcription start site region 50421
Tssr50422 5 26493283 to 26493294 11 - TSS region transcription start site region 50422
Tssr50423 5 26493308 to 26493318 10 - TSS region transcription start site region 50423
Gm42844 5 26599438 to 26599549 111 + pseudogene predicted gene 42844
Del(5D5Mit73-D5Mit351)1J 5 26600987 to 37019120 10418133 chromosomal deletion deletion Chr 5, Jackson 1
Del(5D5Mit73-D5Mit351)5Jcs 5 26600987 to 37019120 10418133 chromosomal deletion deletion, Chr 5, John C. Schimenti 5
D5Mit73 5 26600987 to 26601099 112 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 73
D5Mit124 5 26672892 to 26673086 194 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 124
Cpgi15634 5 26742051 to 26742311 260 CpG island CpG island 15634
Rvfs3 5 138457140 to 26236236 -112220904 QTL Rift Valley fever susceptibility 3