Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:25523310-26173325

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15628 5 25529348 to 25530476 1128 CpG island CpG island 15628
Tssr50410 5 25529511 to 25529524 13 - TSS region transcription start site region 50410
Tssr50411 5 25529577 to 25529604 27 - TSS region transcription start site region 50411
Tssr50412 5 25529622 to 25529639 17 - TSS region transcription start site region 50412
Tssr45470 5 25529829 to 25529873 44 + TSS region transcription start site region 45470
Tssr45471 5 25529967 to 25530049 82 + TSS region transcription start site region 45471
1700096K18Rik 5 25530018 to 25531466 1448 + lincRNA gene RIKEN cDNA 1700096K18 gene
Gm43141 5 25532158 to 25532431 273 - pseudogene predicted gene 43141
Tssr50413 5 25532552 to 25532586 34 - TSS region transcription start site region 50413
Tssr50414 5 25533289 to 25533292 3 - TSS region transcription start site region 50414
Tssr45472 5 25555926 to 25555954 28 + TSS region transcription start site region 45472
Gm46903 5 25607367 to 25631445 24078 - lncRNA gene predicted gene, 46903
Gm42235 5 25614461 to 25626940 12479 + lncRNA gene predicted gene, 42235
Gm42234 5 25639850 to 25648323 8473 + lncRNA gene predicted gene, 42234
Gm43972 5 25659809 to 25661275 1466 + lincRNA gene predicted gene, 43972
Gm10062 5 25659809 to 25661275 1466 - lincRNA gene predicted gene 10062
Tssr50415 5 25665749 to 25665752 3 - TSS region transcription start site region 50415
Cpgi15629 5 25672242 to 25672422 180 CpG island CpG island 15629
A630024J24Rik 5 25677726 to 25681202 3476 unclassified gene RIKEN cDNA A630024J24 gene
Gm43143 5 25687373 to 25689395 2022 - unclassified gene predicted gene 43143
Xrcc2 5 25689814 to 25705797 15983 - protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 2
Cpgi15630 5 25705374 to 25705977 603 CpG island CpG island 15630
Tssr50416 5 25705763 to 25705787 24 - TSS region transcription start site region 50416
Tssr50417 5 25705791 to 25705829 38 - TSS region transcription start site region 50417
Gm43142 5 25710226 to 25710586 360 + pseudogene predicted gene 43142
Tssr50418 5 25713192 to 25713203 11 - TSS region transcription start site region 50418
Tssr50419 5 25740514 to 25740551 37 - TSS region transcription start site region 50419
Tssr45473 5 25753580 to 25753595 15 + TSS region transcription start site region 45473
Cpgi15631 5 25759812 to 25760732 920 CpG island CpG island 15631
Tssr45474 5 25759940 to 25759984 44 + TSS region transcription start site region 45474
Tssr45475 5 25759987 to 25760044 57 + TSS region transcription start site region 45475
Actr3b 5 25759997 to 25850688 90691 + protein coding gene ARP3 actin-related protein 3B
Gm42237 5 25767701 to 25777312 9611 + lncRNA gene predicted gene, 42237
Tssr45476 5 25768502 to 25768515 13 + TSS region transcription start site region 45476
Cpgi15632 5 25768785 to 25769232 447 CpG island CpG island 15632
Tssr45477 5 25774965 to 25774968 3 + TSS region transcription start site region 45477
Tssr45478 5 25848310 to 25848325 15 + TSS region transcription start site region 45478
Tssr45479 5 25848355 to 25848364 9 + TSS region transcription start site region 45479
D5Mit170 5 25874907 to 25875050 143 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 170
Gm21655 5 25919861 to 25926215 6354 - unclassified non-coding RNA gene predicted gene, 21655
Gm21663 5 25936984 to 25942530 5546 - protein coding gene predicted gene, 21663
Gm21671 5 25949797 to 25954344 4547 - protein coding gene predicted gene, 21671
Gm21168 5 25956626 to 25957721 1095 + pseudogene predicted gene, 21168
E330037M01Rik 5 25963847 to 26098363 134516 unclassified gene RIKEN cDNA E330037M01 gene
Gm21680 5 25965961 to 25972663 6702 - protein coding gene predicted gene, 21680
Gm46904 5 25969093 to 25974592 5499 + lncRNA gene predicted gene, 46904
Gm21698 5 25982026 to 25988579 6553 - protein coding gene predicted gene, 21698
Gm1979 5 26000172 to 26004727 4555 - protein coding gene predicted gene 1979
Cpgi15633 5 26006874 to 26007722 848 CpG island CpG island 15633
Gm5067 5 26007027 to 26008035 1008 + pseudogene predicted gene 5067
Tssr164687 5 26007241 to 26007267 26 + TSS region transcription start site region 164687
Tssr164688 5 26007455 to 26007467 12 + TSS region transcription start site region 164688
Tssr164689 5 26007671 to 26007701 30 + TSS region transcription start site region 164689
Gm5862 5 26018421 to 26022891 4470 - protein coding gene predicted gene 5862
Speer4a 5 26034270 to 26039505 5235 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 4A
Gm7347 5 26053137 to 26058538 5401 - protein coding gene predicted gene 7347
Gm6089 5 26070537 to 26071474 937 + pseudogene predicted gene 6089
Gm10471 5 26082574 to 26089291 6717 - protein coding gene predicted gene 10471
5031410I06Rik 5 26098668 to 26105314 6646 - protein coding gene RIKEN cDNA 5031410I06 gene
Gm46905 5 26104162 to 26109638 5476 + lncRNA gene predicted gene, 46905
Gm10220 5 26114764 to 26121421 6657 - protein coding gene predicted gene 10220
Gm46906 5 26120144 to 26124267 4123 + lncRNA gene predicted gene, 46906
Gm34067 5 26142867 to 26166842 23975 + lncRNA gene predicted gene, 34067
D5Jcs61 5 26165382 to 26165520 138 DNA segment DNA segment, Chr 5, John C. Schimenti 61