Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:24894812-26625732

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkag2 5 24862744 to 25100642 237898 - protein coding gene protein kinase, AMP-activated, gamma 2 non-catalytic subunit
Tssr50376 5 24902445 to 24902456 11 - TSS region transcription start site region 50376
Prkag2os1 5 24902569 to 24906849 4280 + antisense lncRNA gene protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1
2900019A20Rik 5 24903367 to 24904159 792 unclassified gene RIKEN cDNA 2900019A20 gene
Cpgi15623 5 24907712 to 24909096 1384 CpG island CpG island 15623
Tssr50377 5 24908374 to 24908428 54 - TSS region transcription start site region 50377
Tssr50378 5 24908430 to 24908482 52 - TSS region transcription start site region 50378
Tssr50379 5 24908560 to 24908583 23 - TSS region transcription start site region 50379
Tssr50380 5 24908671 to 24908683 12 - TSS region transcription start site region 50380
Tssr50381 5 24908763 to 24908777 14 - TSS region transcription start site region 50381
Imrfq1 5 24919119 to 24919241 122 QTL immune response to Factor IX QTL 1
Del(5D5Mit348-D5Mit389)6Jcs 5 24919119 to 30647294 5728175 complex/cluster/region deletion, Chr 5, John C. Schimenti 6
D5Mit348 5 24919119 to 24919241 122 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 348
Tssr45451 5 24919587 to 24919592 5 + TSS region transcription start site region 45451
Tssr50382 5 24925383 to 24925397 14 - TSS region transcription start site region 50382
Tssr50383 5 24925406 to 24925420 14 - TSS region transcription start site region 50383
D5Mit349 5 24969162 to 24969301 139 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 349
Tssr45452 5 24985840 to 24985862 22 + TSS region transcription start site region 45452
1500035N22Rik 5 24985842 to 24998168 12326 + lincRNA gene RIKEN cDNA 1500035N22 gene
Tssr50384 5 24995676 to 24995681 5 - TSS region transcription start site region 50384
Tssr50385 5 24995693 to 24995707 14 - TSS region transcription start site region 50385
Tssr50386 5 24995748 to 24995759 11 - TSS region transcription start site region 50386
Tssr50387 5 24995800 to 24995811 11 - TSS region transcription start site region 50387
Tssr50388 5 24995859 to 24995866 7 - TSS region transcription start site region 50388
Tssr50389 5 24995884 to 24995919 35 - TSS region transcription start site region 50389
Tssr45453 5 24996033 to 24996050 17 + TSS region transcription start site region 45453
D5Mit74 5 25029769 to 25029984 215 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 74
Tssr50390 5 25059442 to 25059453 11 - TSS region transcription start site region 50390
Tssr50391 5 25059617 to 25059627 10 - TSS region transcription start site region 50391
Cpgi15624 5 25081649 to 25081878 229 CpG island CpG island 15624
Gm42232 5 25097747 to 25100004 2257 - lncRNA gene predicted gene, 42232
Cpgi15625 5 25099356 to 25101535 2179 CpG island CpG island 15625
Tssr50392 5 25100189 to 25100212 23 - TSS region transcription start site region 50392
Tssr50393 5 25100220 to 25100232 12 - TSS region transcription start site region 50393
Tssr50394 5 25100400 to 25100457 57 - TSS region transcription start site region 50394
Tssr50395 5 25100579 to 25100586 7 - TSS region transcription start site region 50395
Tssr50396 5 25100596 to 25100614 18 - TSS region transcription start site region 50396
Tssr50397 5 25100624 to 25100657 33 - TSS region transcription start site region 50397
Tssr45454 5 25100700 to 25100759 59 + TSS region transcription start site region 45454
Tssr50398 5 25100890 to 25100932 42 - TSS region transcription start site region 50398
Tssr45455 5 25100923 to 25100988 65 + TSS region transcription start site region 45455
2900005J15Rik 5 25100975 to 25103007 2032 + lncRNA gene RIKEN cDNA 2900005J15 gene
Tssr50399 5 25101052 to 25101064 12 - TSS region transcription start site region 50399
Gm42233 5 25119371 to 25128316 8945 + lncRNA gene predicted gene, 42233
Gm19088 5 25126153 to 25126706 553 + pseudogene predicted gene, 19088
Gm33836 5 25167831 to 25175413 7582 + lncRNA gene predicted gene, 33836
Gm26051 5 25168372 to 25168464 92 - miRNA gene predicted gene, 26051
Tssr45456 5 25181459 to 25181463 4 + TSS region transcription start site region 45456
Galntl5 5 25181460 to 25220297 38837 + protein coding gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5
Tssr1439 5 25181470 to 25181475 5 + TSS region transcription start site region 1439
Tssr45457 5 25181491 to 25181512 21 + TSS region transcription start site region 45457
Gm26356 5 25188361 to 25188643 282 - unclassified non-coding RNA gene predicted gene, 26356
D5Jcs71 5 25195374 to 25195535 161 DNA segment DNA segment, Chr 5, John C. Schimenti 71
Cpgi15626 5 25222690 to 25223314 624 CpG island CpG island 15626
Tssr45458 5 25222844 to 25222855 11 + TSS region transcription start site region 45458
E130116L18Rik 5 25222848 to 25223153 305 - protein coding gene RIKEN cDNA E130116L18 gene
Tssr45459 5 25222862 to 25222951 89 + TSS region transcription start site region 45459
Galnt11 5 25222893 to 25265918 43025 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 11
Tssr45460 5 25246775 to 25246802 27 + TSS region transcription start site region 45460
Tssr45461 5 25247344 to 25247356 12 + TSS region transcription start site region 45461
Tssr45462 5 25247370 to 25247381 11 + TSS region transcription start site region 45462
Tssr45463 5 25247385 to 25247409 24 + TSS region transcription start site region 45463
Tssr45464 5 25248478 to 25248481 3 + TSS region transcription start site region 45464
Tssr45465 5 25249983 to 25250001 18 + TSS region transcription start site region 45465
Tssr50400 5 25270071 to 25270075 4 - TSS region transcription start site region 50400
Kmt2c 5 25271798 to 25498783 226985 - protein coding gene lysine (K)-specific methyltransferase 2C
Tssr50401 5 25299577 to 25299589 12 - TSS region transcription start site region 50401
Tssr50402 5 25330630 to 25330636 6 - TSS region transcription start site region 50402
Gm42585 5 25369020 to 25373039 4019 + unclassified gene predicted gene 42585
Hspe1-ps3 5 25391608 to 25391884 276 + pseudogene heat shock protein 1 (chaperonin 10), pseudogene 3
D5Ertd121e 5 25401772 to 25402015 243 DNA segment DNA segment, Chr 5, ERATO Doi 121, expressed
Gm20432 5 25433036 to 25433285 249 - pseudogene predicted gene 20432
Tssr50403 5 25436344 to 25436347 3 - TSS region transcription start site region 50403
D5Jcs72 5 25446946 to 25447050 104 DNA segment DNA segment, Chr 5, John C. Schimenti 72
Gm18343 5 25450305 to 25450908 603 + pseudogene predicted gene, 18343
Tssr50404 5 25472523 to 25472528 5 - TSS region transcription start site region 50404
Tssr50405 5 25485728 to 25485732 4 - TSS region transcription start site region 50405
Tssr50406 5 25496369 to 25496373 4 - TSS region transcription start site region 50406
Cpgi15627 5 25497577 to 25500471 2894 CpG island CpG island 15627
Tssr50407 5 25498722 to 25498744 22 - TSS region transcription start site region 50407
Tssr50408 5 25498748 to 25498772 24 - TSS region transcription start site region 50408
Tssr50409 5 25498774 to 25498812 38 - TSS region transcription start site region 50409
4831440E17Rik 5 25499067 to 25501541 2474 + lincRNA gene RIKEN cDNA 4831440E17 gene
Gm22656 5 25510865 to 25511035 170 + snRNA gene predicted gene, 22656
Tssr45466 5 25510866 to 25510867 1 + TSS region transcription start site region 45466
Tssr45467 5 25516039 to 25516048 9 + TSS region transcription start site region 45467
Tssr45468 5 25516057 to 25516058 1 + TSS region transcription start site region 45468
Tssr45469 5 25516061 to 25516102 41 + TSS region transcription start site region 45469
Cct8l1 5 25516067 to 25518027 1960 + protein coding gene chaperonin containing TCP1, subunit 8 (theta)-like 1
Cpgi15628 5 25529348 to 25530476 1128 CpG island CpG island 15628
Tssr50410 5 25529511 to 25529524 13 - TSS region transcription start site region 50410
Tssr50411 5 25529577 to 25529604 27 - TSS region transcription start site region 50411
Tssr50412 5 25529622 to 25529639 17 - TSS region transcription start site region 50412
Tssr45470 5 25529829 to 25529873 44 + TSS region transcription start site region 45470
Tssr45471 5 25529967 to 25530049 82 + TSS region transcription start site region 45471
1700096K18Rik 5 25530018 to 25531466 1448 + lincRNA gene RIKEN cDNA 1700096K18 gene
Gm43141 5 25532158 to 25532431 273 - pseudogene predicted gene 43141
Tssr50413 5 25532552 to 25532586 34 - TSS region transcription start site region 50413
Tssr50414 5 25533289 to 25533292 3 - TSS region transcription start site region 50414
Tssr45472 5 25555926 to 25555954 28 + TSS region transcription start site region 45472
Gm46903 5 25607367 to 25631445 24078 - lncRNA gene predicted gene, 46903
Gm42235 5 25614461 to 25626940 12479 + lncRNA gene predicted gene, 42235
Gm42234 5 25639850 to 25648323 8473 + lncRNA gene predicted gene, 42234
Gm43972 5 25659809 to 25661275 1466 + lincRNA gene predicted gene, 43972
Gm10062 5 25659809 to 25661275 1466 - lincRNA gene predicted gene 10062
Tssr50415 5 25665749 to 25665752 3 - TSS region transcription start site region 50415
Cpgi15629 5 25672242 to 25672422 180 CpG island CpG island 15629
A630024J24Rik 5 25677726 to 25681202 3476 unclassified gene RIKEN cDNA A630024J24 gene
Gm43143 5 25687373 to 25689395 2022 - unclassified gene predicted gene 43143
Xrcc2 5 25689814 to 25705797 15983 - protein coding gene X-ray repair complementing defective repair in Chinese hamster cells 2
Cpgi15630 5 25705374 to 25705977 603 CpG island CpG island 15630
Tssr50416 5 25705763 to 25705787 24 - TSS region transcription start site region 50416
Tssr50417 5 25705791 to 25705829 38 - TSS region transcription start site region 50417
Gm43142 5 25710226 to 25710586 360 + pseudogene predicted gene 43142
Tssr50418 5 25713192 to 25713203 11 - TSS region transcription start site region 50418
Tssr50419 5 25740514 to 25740551 37 - TSS region transcription start site region 50419
Tssr45473 5 25753580 to 25753595 15 + TSS region transcription start site region 45473
Cpgi15631 5 25759812 to 25760732 920 CpG island CpG island 15631
Tssr45474 5 25759940 to 25759984 44 + TSS region transcription start site region 45474
Tssr45475 5 25759987 to 25760044 57 + TSS region transcription start site region 45475
Actr3b 5 25759997 to 25850688 90691 + protein coding gene ARP3 actin-related protein 3B
Gm42237 5 25767701 to 25777312 9611 + lncRNA gene predicted gene, 42237
Tssr45476 5 25768502 to 25768515 13 + TSS region transcription start site region 45476
Cpgi15632 5 25768785 to 25769232 447 CpG island CpG island 15632
Tssr45477 5 25774965 to 25774968 3 + TSS region transcription start site region 45477
Tssr45478 5 25848310 to 25848325 15 + TSS region transcription start site region 45478
Tssr45479 5 25848355 to 25848364 9 + TSS region transcription start site region 45479
D5Mit170 5 25874907 to 25875050 143 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 170
Gm21655 5 25919861 to 25926215 6354 - unclassified non-coding RNA gene predicted gene, 21655
Gm21663 5 25936984 to 25942530 5546 - protein coding gene predicted gene, 21663
Gm21671 5 25949797 to 25954344 4547 - protein coding gene predicted gene, 21671
Gm21168 5 25956626 to 25957721 1095 + pseudogene predicted gene, 21168
E330037M01Rik 5 25963847 to 26098363 134516 unclassified gene RIKEN cDNA E330037M01 gene
Gm21680 5 25965961 to 25972663 6702 - protein coding gene predicted gene, 21680
Gm46904 5 25969093 to 25974592 5499 + lncRNA gene predicted gene, 46904
Gm21698 5 25982026 to 25988579 6553 - protein coding gene predicted gene, 21698
Gm1979 5 26000172 to 26004727 4555 - protein coding gene predicted gene 1979
Cpgi15633 5 26006874 to 26007722 848 CpG island CpG island 15633
Gm5067 5 26007027 to 26008035 1008 + pseudogene predicted gene 5067
Tssr164687 5 26007241 to 26007267 26 + TSS region transcription start site region 164687
Tssr164688 5 26007455 to 26007467 12 + TSS region transcription start site region 164688
Tssr164689 5 26007671 to 26007701 30 + TSS region transcription start site region 164689
Gm5862 5 26018421 to 26022891 4470 - protein coding gene predicted gene 5862
Speer4a 5 26034270 to 26039505 5235 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 4A
Gm7347 5 26053137 to 26058538 5401 - protein coding gene predicted gene 7347
Gm6089 5 26070537 to 26071474 937 + pseudogene predicted gene 6089
Gm10471 5 26082574 to 26089291 6717 - protein coding gene predicted gene 10471
5031410I06Rik 5 26098668 to 26105314 6646 - protein coding gene RIKEN cDNA 5031410I06 gene
Gm46905 5 26104162 to 26109638 5476 + lncRNA gene predicted gene, 46905
Gm10220 5 26114764 to 26121421 6657 - protein coding gene predicted gene 10220
Gm46906 5 26120144 to 26124267 4123 + lncRNA gene predicted gene, 46906
Gm34067 5 26142867 to 26166842 23975 + lncRNA gene predicted gene, 34067
D5Jcs61 5 26165382 to 26165520 138 DNA segment DNA segment, Chr 5, John C. Schimenti 61
D5Mit125 5 26236236 to 26236380 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 125
Gm7361 5 26257691 to 26264308 6617 + protein coding gene predicted gene 7361
Gm18957 5 26355418 to 26357230 1812 + pseudogene predicted gene, 18957
Gm34536 5 26389284 to 26403860 14576 + lncRNA gene predicted gene, 34536
4930584F24Rik 5 26460070 to 26493314 33244 - lincRNA gene RIKEN cDNA 4930584F24 gene
Tssr50420 5 26492323 to 26492334 11 - TSS region transcription start site region 50420
Tssr50421 5 26493277 to 26493282 5 - TSS region transcription start site region 50421
Tssr50422 5 26493283 to 26493294 11 - TSS region transcription start site region 50422
Tssr50423 5 26493308 to 26493318 10 - TSS region transcription start site region 50423
Gm42844 5 26599438 to 26599549 111 + pseudogene predicted gene 42844
Del(5D5Mit73-D5Mit351)1J 5 26600987 to 37019120 10418133 chromosomal deletion deletion Chr 5, Jackson 1
Del(5D5Mit73-D5Mit351)5Jcs 5 26600987 to 37019120 10418133 chromosomal deletion deletion, Chr 5, John C. Schimenti 5
D5Mit73 5 26600987 to 26601099 112 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 73
Rvfs3 5 138457140 to 26236236 -112220904 QTL Rift Valley fever susceptibility 3