Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:24842744-25120642

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15622 5 24841731 to 24843395 1664 CpG island CpG island 15622
Tssr45450 5 24842988 to 24843001 13 + TSS region transcription start site region 45450
Prkag2 5 24862744 to 25100642 237898 - protein coding gene protein kinase, AMP-activated, gamma 2 non-catalytic subunit
Prkag2os2 5 24873544 to 24875934 2390 + antisense lncRNA gene protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 2
Tssr50375 5 24889914 to 24889927 13 - TSS region transcription start site region 50375
Tssr50376 5 24902445 to 24902456 11 - TSS region transcription start site region 50376
Prkag2os1 5 24902569 to 24906849 4280 + antisense lncRNA gene protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1
2900019A20Rik 5 24903367 to 24904159 792 unclassified gene RIKEN cDNA 2900019A20 gene
Cpgi15623 5 24907712 to 24909096 1384 CpG island CpG island 15623
Tssr50377 5 24908374 to 24908428 54 - TSS region transcription start site region 50377
Tssr50378 5 24908430 to 24908482 52 - TSS region transcription start site region 50378
Tssr50379 5 24908560 to 24908583 23 - TSS region transcription start site region 50379
Tssr50380 5 24908671 to 24908683 12 - TSS region transcription start site region 50380
Tssr50381 5 24908763 to 24908777 14 - TSS region transcription start site region 50381
Del(5D5Mit348-D5Mit389)6Jcs 5 24919119 to 30647294 5728175 complex/cluster/region deletion, Chr 5, John C. Schimenti 6
Imrfq1 5 24919119 to 24919241 122 QTL immune response to Factor IX QTL 1
D5Mit348 5 24919119 to 24919241 122 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 348
Tssr45451 5 24919587 to 24919592 5 + TSS region transcription start site region 45451
Tssr50382 5 24925383 to 24925397 14 - TSS region transcription start site region 50382
Tssr50383 5 24925406 to 24925420 14 - TSS region transcription start site region 50383
D5Mit349 5 24969162 to 24969301 139 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 349
Tssr45452 5 24985840 to 24985862 22 + TSS region transcription start site region 45452
1500035N22Rik 5 24985842 to 24998168 12326 + lincRNA gene RIKEN cDNA 1500035N22 gene
Tssr50384 5 24995676 to 24995681 5 - TSS region transcription start site region 50384
Tssr50385 5 24995693 to 24995707 14 - TSS region transcription start site region 50385
Tssr50386 5 24995748 to 24995759 11 - TSS region transcription start site region 50386
Tssr50387 5 24995800 to 24995811 11 - TSS region transcription start site region 50387
Tssr50388 5 24995859 to 24995866 7 - TSS region transcription start site region 50388
Tssr50389 5 24995884 to 24995919 35 - TSS region transcription start site region 50389
Tssr45453 5 24996033 to 24996050 17 + TSS region transcription start site region 45453
D5Mit74 5 25029769 to 25029984 215 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 74
Tssr50390 5 25059442 to 25059453 11 - TSS region transcription start site region 50390
Tssr50391 5 25059617 to 25059627 10 - TSS region transcription start site region 50391
Cpgi15624 5 25081649 to 25081878 229 CpG island CpG island 15624
Gm42232 5 25097747 to 25100004 2257 - lncRNA gene predicted gene, 42232
Cpgi15625 5 25099356 to 25101535 2179 CpG island CpG island 15625
Tssr50392 5 25100189 to 25100212 23 - TSS region transcription start site region 50392
Tssr50393 5 25100220 to 25100232 12 - TSS region transcription start site region 50393
Tssr50394 5 25100400 to 25100457 57 - TSS region transcription start site region 50394
Tssr50395 5 25100579 to 25100586 7 - TSS region transcription start site region 50395
Tssr50396 5 25100596 to 25100614 18 - TSS region transcription start site region 50396
Tssr50397 5 25100624 to 25100657 33 - TSS region transcription start site region 50397
Tssr45454 5 25100700 to 25100759 59 + TSS region transcription start site region 45454
Tssr50398 5 25100890 to 25100932 42 - TSS region transcription start site region 50398
Tssr45455 5 25100923 to 25100988 65 + TSS region transcription start site region 45455
2900005J15Rik 5 25100975 to 25103007 2032 + lncRNA gene RIKEN cDNA 2900005J15 gene
Tssr50399 5 25101052 to 25101064 12 - TSS region transcription start site region 50399
Gm42233 5 25119371 to 25128316 8945 + lncRNA gene predicted gene, 42233