Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:24605833-24765853

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smarcd3 5 24592622 to 24624456 31834 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
D5Mit180 5 24605715 to 24605857 142 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 180
Tssr50354 5 24606341 to 24606378 37 - TSS region transcription start site region 50354
Tssr50355 5 24622646 to 24622653 7 - TSS region transcription start site region 50355
Tssr50356 5 24622659 to 24622680 21 - TSS region transcription start site region 50356
Tssr50357 5 24623472 to 24623483 11 - TSS region transcription start site region 50357
Cpgi15616 5 24623915 to 24624705 790 CpG island CpG island 15616
Tssr50358 5 24624397 to 24624445 48 - TSS region transcription start site region 50358
Tssr45438 5 24645447 to 24645463 16 + TSS region transcription start site region 45438
1700022A21Rik 5 24645453 to 24648860 3407 + pseudogene RIKEN cDNA 1700022A21 gene
Tssr45439 5 24645465 to 24645470 5 + TSS region transcription start site region 45439
Tssr45440 5 24645482 to 24645483 1 + TSS region transcription start site region 45440
Tssr45441 5 24645494 to 24645500 6 + TSS region transcription start site region 45441
Tssr45442 5 24645501 to 24645506 5 + TSS region transcription start site region 45442
Tssr50359 5 24685352 to 24685389 37 - TSS region transcription start site region 50359
Tssr50360 5 24685414 to 24685439 25 - TSS region transcription start site region 50360
Cpgi15617 5 24685444 to 24686366 922 CpG island CpG island 15617
Nub1 5 24685815 to 24710378 24563 + protein coding gene negative regulator of ubiquitin-like proteins 1
Tssr45443 5 24685815 to 24685819 4 + TSS region transcription start site region 45443
Tssr45444 5 24685833 to 24685853 20 + TSS region transcription start site region 45444
Tssr45445 5 24685954 to 24686004 50 + TSS region transcription start site region 45445
Gm26648 5 24696902 to 24704690 7788 - antisense lncRNA gene predicted gene, 26648
Tssr45446 5 24697076 to 24697094 18 + TSS region transcription start site region 45446
Tssr50361 5 24704656 to 24704671 15 - TSS region transcription start site region 50361
Tssr45447 5 24709062 to 24709079 17 + TSS region transcription start site region 45447
Tssr45448 5 24709567 to 24709591 24 + TSS region transcription start site region 45448
Wdr86 5 24711738 to 24730727 18989 - protein coding gene WD repeat domain 86
Cpgi15618 5 24729885 to 24731174 1289 CpG island CpG island 15618
Tssr50362 5 24730611 to 24730622 11 - TSS region transcription start site region 50362
Tssr50363 5 24730635 to 24730655 20 - TSS region transcription start site region 50363
Gm42231 5 24730948 to 24740820 9872 + lncRNA gene predicted gene, 42231
Cpgi15619 5 24750787 to 24751422 635 CpG island CpG island 15619
Tssr45449 5 24750897 to 24750918 21 + TSS region transcription start site region 45449
Crygn 5 24751002 to 24757843 6841 - protein coding gene crystallin, gamma N
Tssr50364 5 24752155 to 24752176 21 - TSS region transcription start site region 50364
Gm33591 5 24757042 to 24758814 1772 + lncRNA gene predicted gene, 33591
Cpgi15620 5 24757735 to 24758041 306 CpG island CpG island 15620
Tssr50365 5 24757843 to 24757856 13 - TSS region transcription start site region 50365