Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:24577747-25620004

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15610 5 24576769 to 24578001 1232 CpG island CpG island 15610
Tssr45433 5 24577718 to 24577760 42 + TSS region transcription start site region 45433
Gm10221 5 24581554 to 24581862 308 - pseudogene predicted gene 10221
Cpgi15611 5 24586449 to 24587202 753 CpG island CpG island 15611
Tssr45434 5 24586707 to 24586718 11 + TSS region transcription start site region 45434
Tssr45435 5 24586721 to 24586794 73 + TSS region transcription start site region 45435
Chpf2 5 24586741 to 24594556 7815 + protein coding gene chondroitin polymerizing factor 2
Tssr45436 5 24586798 to 24586822 24 + TSS region transcription start site region 45436
Tssr45437 5 24587137 to 24587165 28 + TSS region transcription start site region 45437
Cpgi15612 5 24591200 to 24591907 707 CpG island CpG island 15612
Mir671 5 24592114 to 24592211 97 + miRNA gene microRNA 671
Smarcd3 5 24592622 to 24624456 31834 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
Cpgi15613 5 24598408 to 24599011 603 CpG island CpG island 15613
Tssr50342 5 24598634 to 24598654 20 - TSS region transcription start site region 50342
Tssr50343 5 24598722 to 24598766 44 - TSS region transcription start site region 50343
Tssr50344 5 24598904 to 24598918 14 - TSS region transcription start site region 50344
Tssr50345 5 24598919 to 24598929 10 - TSS region transcription start site region 50345
Tssr50346 5 24598933 to 24598955 22 - TSS region transcription start site region 50346
Cpgi15614 5 24601209 to 24602894 1685 CpG island CpG island 15614
Tssr50347 5 24601858 to 24601904 46 - TSS region transcription start site region 50347
Tssr50348 5 24601915 to 24601922 7 - TSS region transcription start site region 50348
Tssr50349 5 24601961 to 24602007 46 - TSS region transcription start site region 50349
Tssr50350 5 24602085 to 24602099 14 - TSS region transcription start site region 50350
Tssr50351 5 24602175 to 24602218 43 - TSS region transcription start site region 50351
Tssr50352 5 24602229 to 24602288 59 - TSS region transcription start site region 50352
Tssr50353 5 24603114 to 24603122 8 - TSS region transcription start site region 50353
Cpgi15615 5 24604218 to 24605266 1048 CpG island CpG island 15615
D5Mit180 5 24605715 to 24605857 142 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 180
Tssr50354 5 24606341 to 24606378 37 - TSS region transcription start site region 50354
Tssr50355 5 24622646 to 24622653 7 - TSS region transcription start site region 50355
Tssr50356 5 24622659 to 24622680 21 - TSS region transcription start site region 50356
Tssr50357 5 24623472 to 24623483 11 - TSS region transcription start site region 50357
Cpgi15616 5 24623915 to 24624705 790 CpG island CpG island 15616
Tssr50358 5 24624397 to 24624445 48 - TSS region transcription start site region 50358
Tssr45438 5 24645447 to 24645463 16 + TSS region transcription start site region 45438
1700022A21Rik 5 24645453 to 24648860 3407 + pseudogene RIKEN cDNA 1700022A21 gene
Tssr45439 5 24645465 to 24645470 5 + TSS region transcription start site region 45439
Tssr45440 5 24645482 to 24645483 1 + TSS region transcription start site region 45440
Tssr45441 5 24645494 to 24645500 6 + TSS region transcription start site region 45441
Tssr45442 5 24645501 to 24645506 5 + TSS region transcription start site region 45442
Tssr50359 5 24685352 to 24685389 37 - TSS region transcription start site region 50359
Tssr50360 5 24685414 to 24685439 25 - TSS region transcription start site region 50360
Cpgi15617 5 24685444 to 24686366 922 CpG island CpG island 15617
Nub1 5 24685815 to 24710378 24563 + protein coding gene negative regulator of ubiquitin-like proteins 1
Tssr45443 5 24685815 to 24685819 4 + TSS region transcription start site region 45443
Tssr45444 5 24685833 to 24685853 20 + TSS region transcription start site region 45444
Tssr45445 5 24685954 to 24686004 50 + TSS region transcription start site region 45445
Gm26648 5 24696902 to 24704690 7788 - antisense lncRNA gene predicted gene, 26648
Tssr45446 5 24697076 to 24697094 18 + TSS region transcription start site region 45446
Tssr50361 5 24704656 to 24704671 15 - TSS region transcription start site region 50361
Tssr45447 5 24709062 to 24709079 17 + TSS region transcription start site region 45447
Tssr45448 5 24709567 to 24709591 24 + TSS region transcription start site region 45448
Wdr86 5 24711738 to 24730727 18989 - protein coding gene WD repeat domain 86
Cpgi15618 5 24729885 to 24731174 1289 CpG island CpG island 15618
Tssr50362 5 24730611 to 24730622 11 - TSS region transcription start site region 50362
Tssr50363 5 24730635 to 24730655 20 - TSS region transcription start site region 50363
Gm42231 5 24730948 to 24740820 9872 + lncRNA gene predicted gene, 42231
Cpgi15619 5 24750787 to 24751422 635 CpG island CpG island 15619
Tssr45449 5 24750897 to 24750918 21 + TSS region transcription start site region 45449
Crygn 5 24751002 to 24757843 6841 - protein coding gene crystallin, gamma N
Tssr50364 5 24752155 to 24752176 21 - TSS region transcription start site region 50364
Gm33591 5 24757042 to 24758814 1772 + lncRNA gene predicted gene, 33591
Cpgi15620 5 24757735 to 24758041 306 CpG island CpG island 15620
Tssr50365 5 24757843 to 24757856 13 - TSS region transcription start site region 50365
Cpgi15621 5 24778692 to 24779066 374 CpG island CpG island 15621
Rheb 5 24802823 to 24842361 39538 - protein coding gene Ras homolog enriched in brain
Tssr50366 5 24813993 to 24813998 5 - TSS region transcription start site region 50366
Gm25363 5 24820593 to 24820837 244 - unclassified non-coding RNA gene predicted gene, 25363
Tssr50367 5 24830048 to 24830055 7 - TSS region transcription start site region 50367
Cpgi15622 5 24841731 to 24843395 1664 CpG island CpG island 15622
Tssr50368 5 24842307 to 24842318 11 - TSS region transcription start site region 50368
Tssr50369 5 24842357 to 24842453 96 - TSS region transcription start site region 50369
Tssr50370 5 24842456 to 24842467 11 - TSS region transcription start site region 50370
Tssr50371 5 24842470 to 24842481 11 - TSS region transcription start site region 50371
Tssr50372 5 24842509 to 24842520 11 - TSS region transcription start site region 50372
Tssr50373 5 24842551 to 24842571 20 - TSS region transcription start site region 50373
Tssr50374 5 24842579 to 24842624 45 - TSS region transcription start site region 50374
Tssr45450 5 24842988 to 24843001 13 + TSS region transcription start site region 45450
Prkag2 5 24862744 to 25100642 237898 - protein coding gene protein kinase, AMP-activated, gamma 2 non-catalytic subunit
Prkag2os2 5 24873544 to 24875934 2390 + antisense lncRNA gene protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 2
Tssr50375 5 24889914 to 24889927 13 - TSS region transcription start site region 50375
Tssr50376 5 24902445 to 24902456 11 - TSS region transcription start site region 50376
Prkag2os1 5 24902569 to 24906849 4280 + antisense lncRNA gene protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1
2900019A20Rik 5 24903367 to 24904159 792 unclassified gene RIKEN cDNA 2900019A20 gene
Cpgi15623 5 24907712 to 24909096 1384 CpG island CpG island 15623
Tssr50377 5 24908374 to 24908428 54 - TSS region transcription start site region 50377
Tssr50378 5 24908430 to 24908482 52 - TSS region transcription start site region 50378
Tssr50379 5 24908560 to 24908583 23 - TSS region transcription start site region 50379
Tssr50380 5 24908671 to 24908683 12 - TSS region transcription start site region 50380
Tssr50381 5 24908763 to 24908777 14 - TSS region transcription start site region 50381
Del(5D5Mit348-D5Mit389)6Jcs 5 24919119 to 30647294 5728175 complex/cluster/region deletion, Chr 5, John C. Schimenti 6
D5Mit348 5 24919119 to 24919241 122 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 348
Imrfq1 5 24919119 to 24919241 122 QTL immune response to Factor IX QTL 1
Tssr45451 5 24919587 to 24919592 5 + TSS region transcription start site region 45451
Tssr50382 5 24925383 to 24925397 14 - TSS region transcription start site region 50382
Tssr50383 5 24925406 to 24925420 14 - TSS region transcription start site region 50383
D5Mit349 5 24969162 to 24969301 139 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 349
Tssr45452 5 24985840 to 24985862 22 + TSS region transcription start site region 45452
1500035N22Rik 5 24985842 to 24998168 12326 + lincRNA gene RIKEN cDNA 1500035N22 gene
Tssr50384 5 24995676 to 24995681 5 - TSS region transcription start site region 50384
Tssr50385 5 24995693 to 24995707 14 - TSS region transcription start site region 50385
Tssr50386 5 24995748 to 24995759 11 - TSS region transcription start site region 50386
Tssr50387 5 24995800 to 24995811 11 - TSS region transcription start site region 50387
Tssr50388 5 24995859 to 24995866 7 - TSS region transcription start site region 50388
Tssr50389 5 24995884 to 24995919 35 - TSS region transcription start site region 50389
Tssr45453 5 24996033 to 24996050 17 + TSS region transcription start site region 45453
D5Mit74 5 25029769 to 25029984 215 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 74
Tssr50390 5 25059442 to 25059453 11 - TSS region transcription start site region 50390
Tssr50391 5 25059617 to 25059627 10 - TSS region transcription start site region 50391
Cpgi15624 5 25081649 to 25081878 229 CpG island CpG island 15624
Gm42232 5 25097747 to 25100004 2257 - lncRNA gene predicted gene, 42232
Cpgi15625 5 25099356 to 25101535 2179 CpG island CpG island 15625
Tssr50392 5 25100189 to 25100212 23 - TSS region transcription start site region 50392
Tssr50393 5 25100220 to 25100232 12 - TSS region transcription start site region 50393
Tssr50394 5 25100400 to 25100457 57 - TSS region transcription start site region 50394
Tssr50395 5 25100579 to 25100586 7 - TSS region transcription start site region 50395
Tssr50396 5 25100596 to 25100614 18 - TSS region transcription start site region 50396
Tssr50397 5 25100624 to 25100657 33 - TSS region transcription start site region 50397
Tssr45454 5 25100700 to 25100759 59 + TSS region transcription start site region 45454
Tssr50398 5 25100890 to 25100932 42 - TSS region transcription start site region 50398
Tssr45455 5 25100923 to 25100988 65 + TSS region transcription start site region 45455
2900005J15Rik 5 25100975 to 25103007 2032 + lncRNA gene RIKEN cDNA 2900005J15 gene
Tssr50399 5 25101052 to 25101064 12 - TSS region transcription start site region 50399
Gm42233 5 25119371 to 25128316 8945 + lncRNA gene predicted gene, 42233
Gm19088 5 25126153 to 25126706 553 + pseudogene predicted gene, 19088
Gm33836 5 25167831 to 25175413 7582 + lncRNA gene predicted gene, 33836
Gm26051 5 25168372 to 25168464 92 - miRNA gene predicted gene, 26051
Tssr45456 5 25181459 to 25181463 4 + TSS region transcription start site region 45456
Galntl5 5 25181460 to 25220297 38837 + protein coding gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5
Tssr1439 5 25181470 to 25181475 5 + TSS region transcription start site region 1439
Tssr45457 5 25181491 to 25181512 21 + TSS region transcription start site region 45457
Gm26356 5 25188361 to 25188643 282 - unclassified non-coding RNA gene predicted gene, 26356
D5Jcs71 5 25195374 to 25195535 161 DNA segment DNA segment, Chr 5, John C. Schimenti 71
Cpgi15626 5 25222690 to 25223314 624 CpG island CpG island 15626
Tssr45458 5 25222844 to 25222855 11 + TSS region transcription start site region 45458
E130116L18Rik 5 25222848 to 25223153 305 - protein coding gene RIKEN cDNA E130116L18 gene
Tssr45459 5 25222862 to 25222951 89 + TSS region transcription start site region 45459
Galnt11 5 25222893 to 25265918 43025 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 11
Tssr45460 5 25246775 to 25246802 27 + TSS region transcription start site region 45460
Tssr45461 5 25247344 to 25247356 12 + TSS region transcription start site region 45461
Tssr45462 5 25247370 to 25247381 11 + TSS region transcription start site region 45462
Tssr45463 5 25247385 to 25247409 24 + TSS region transcription start site region 45463
Tssr45464 5 25248478 to 25248481 3 + TSS region transcription start site region 45464
Tssr45465 5 25249983 to 25250001 18 + TSS region transcription start site region 45465
Tssr50400 5 25270071 to 25270075 4 - TSS region transcription start site region 50400
Kmt2c 5 25271798 to 25498783 226985 - protein coding gene lysine (K)-specific methyltransferase 2C
Tssr50401 5 25299577 to 25299589 12 - TSS region transcription start site region 50401
Tssr50402 5 25330630 to 25330636 6 - TSS region transcription start site region 50402
Gm42585 5 25369020 to 25373039 4019 + unclassified gene predicted gene 42585
Hspe1-ps3 5 25391608 to 25391884 276 + pseudogene heat shock protein 1 (chaperonin 10), pseudogene 3
D5Ertd121e 5 25401772 to 25402015 243 DNA segment DNA segment, Chr 5, ERATO Doi 121, expressed
Gm20432 5 25433036 to 25433285 249 - pseudogene predicted gene 20432
Tssr50403 5 25436344 to 25436347 3 - TSS region transcription start site region 50403
D5Jcs72 5 25446946 to 25447050 104 DNA segment DNA segment, Chr 5, John C. Schimenti 72
Gm18343 5 25450305 to 25450908 603 + pseudogene predicted gene, 18343
Tssr50404 5 25472523 to 25472528 5 - TSS region transcription start site region 50404
Tssr50405 5 25485728 to 25485732 4 - TSS region transcription start site region 50405
Tssr50406 5 25496369 to 25496373 4 - TSS region transcription start site region 50406
Cpgi15627 5 25497577 to 25500471 2894 CpG island CpG island 15627
Tssr50407 5 25498722 to 25498744 22 - TSS region transcription start site region 50407
Tssr50408 5 25498748 to 25498772 24 - TSS region transcription start site region 50408
Tssr50409 5 25498774 to 25498812 38 - TSS region transcription start site region 50409
4831440E17Rik 5 25499067 to 25501541 2474 + lincRNA gene RIKEN cDNA 4831440E17 gene
Gm22656 5 25510865 to 25511035 170 + snRNA gene predicted gene, 22656
Tssr45466 5 25510866 to 25510867 1 + TSS region transcription start site region 45466
Tssr45467 5 25516039 to 25516048 9 + TSS region transcription start site region 45467
Tssr45468 5 25516057 to 25516058 1 + TSS region transcription start site region 45468
Tssr45469 5 25516061 to 25516102 41 + TSS region transcription start site region 45469
Cct8l1 5 25516067 to 25518027 1960 + protein coding gene chaperonin containing TCP1, subunit 8 (theta)-like 1
Cpgi15628 5 25529348 to 25530476 1128 CpG island CpG island 15628
Tssr50410 5 25529511 to 25529524 13 - TSS region transcription start site region 50410
Tssr50411 5 25529577 to 25529604 27 - TSS region transcription start site region 50411
Tssr50412 5 25529622 to 25529639 17 - TSS region transcription start site region 50412
Tssr45470 5 25529829 to 25529873 44 + TSS region transcription start site region 45470
Tssr45471 5 25529967 to 25530049 82 + TSS region transcription start site region 45471
1700096K18Rik 5 25530018 to 25531466 1448 + lincRNA gene RIKEN cDNA 1700096K18 gene
Gm43141 5 25532158 to 25532431 273 - pseudogene predicted gene 43141
Tssr50413 5 25532552 to 25532586 34 - TSS region transcription start site region 50413
Tssr50414 5 25533289 to 25533292 3 - TSS region transcription start site region 50414
Tssr45472 5 25555926 to 25555954 28 + TSS region transcription start site region 45472
Gm46903 5 25607367 to 25631445 24078 - lncRNA gene predicted gene, 46903
Gm42235 5 25614461 to 25626940 12479 + lncRNA gene predicted gene, 42235