Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:24472823-25172361

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Agap3 5 24452177 to 24502047 49870 + protein coding gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
Tssr45429 5 24473608 to 24473614 6 + TSS region transcription start site region 45429
Cpgi15604 5 24473946 to 24475622 1676 CpG island CpG island 15604
Tssr45430 5 24474155 to 24474184 29 + TSS region transcription start site region 45430
Tssr50328 5 24475598 to 24475610 12 - TSS region transcription start site region 50328
Tssr45431 5 24482769 to 24482774 5 + TSS region transcription start site region 45431
Tssr45432 5 24483904 to 24483921 17 + TSS region transcription start site region 45432
Gbx1 5 24504426 to 24526848 22422 - protein coding gene gastrulation brain homeobox 1
Cpgi15605 5 24504586 to 24505052 466 CpG island CpG island 15605
Cpgi15606 5 24525604 to 24527512 1908 CpG island CpG island 15606
Tssr50329 5 24526733 to 24526739 6 - TSS region transcription start site region 50329
Cpgi15607 5 24530135 to 24530572 437 CpG island CpG island 15607
Asb10 5 24532697 to 24540978 8281 - protein coding gene ankyrin repeat and SOCS box-containing 10
Cpgi15608 5 24537654 to 24537927 273 CpG island CpG island 15608
Tssr50330 5 24540378 to 24540383 5 - TSS region transcription start site region 50330
Tssr50331 5 24540384 to 24540395 11 - TSS region transcription start site region 50331
Tssr50332 5 24540413 to 24540422 9 - TSS region transcription start site region 50332
Tssr50333 5 24540423 to 24540426 3 - TSS region transcription start site region 50333
Tssr50334 5 24540439 to 24540451 12 - TSS region transcription start site region 50334
Tssr50335 5 24540940 to 24540950 10 - TSS region transcription start site region 50335
Tssr50336 5 24540976 to 24541008 32 - TSS region transcription start site region 50336
Iqca1l 5 24543434 to 24555469 12035 - protein coding gene IQ motif containing with AAA domain 1 like
Cpgi15609 5 24554448 to 24554707 259 CpG island CpG island 15609
Tssr50337 5 24555401 to 24555421 20 - TSS region transcription start site region 50337
Tssr50338 5 24555428 to 24555440 12 - TSS region transcription start site region 50338
Abcf2 5 24565345 to 24577467 12122 - protein coding gene ATP-binding cassette, sub-family F (GCN20), member 2
Cpgi15610 5 24576769 to 24578001 1232 CpG island CpG island 15610
Tssr50339 5 24577309 to 24577320 11 - TSS region transcription start site region 50339
Tssr50340 5 24577370 to 24577429 59 - TSS region transcription start site region 50340
Tssr50341 5 24577477 to 24577493 16 - TSS region transcription start site region 50341
Tssr45433 5 24577718 to 24577760 42 + TSS region transcription start site region 45433
Gm10221 5 24581554 to 24581862 308 - pseudogene predicted gene 10221
Cpgi15611 5 24586449 to 24587202 753 CpG island CpG island 15611
Tssr45434 5 24586707 to 24586718 11 + TSS region transcription start site region 45434
Tssr45435 5 24586721 to 24586794 73 + TSS region transcription start site region 45435
Chpf2 5 24586741 to 24594556 7815 + protein coding gene chondroitin polymerizing factor 2
Tssr45436 5 24586798 to 24586822 24 + TSS region transcription start site region 45436
Tssr45437 5 24587137 to 24587165 28 + TSS region transcription start site region 45437
Cpgi15612 5 24591200 to 24591907 707 CpG island CpG island 15612
Mir671 5 24592114 to 24592211 97 + miRNA gene microRNA 671
Smarcd3 5 24592622 to 24624456 31834 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
Cpgi15613 5 24598408 to 24599011 603 CpG island CpG island 15613
Tssr50342 5 24598634 to 24598654 20 - TSS region transcription start site region 50342
Tssr50343 5 24598722 to 24598766 44 - TSS region transcription start site region 50343
Tssr50344 5 24598904 to 24598918 14 - TSS region transcription start site region 50344
Tssr50345 5 24598919 to 24598929 10 - TSS region transcription start site region 50345
Tssr50346 5 24598933 to 24598955 22 - TSS region transcription start site region 50346
Cpgi15614 5 24601209 to 24602894 1685 CpG island CpG island 15614
Tssr50347 5 24601858 to 24601904 46 - TSS region transcription start site region 50347
Tssr50348 5 24601915 to 24601922 7 - TSS region transcription start site region 50348
Tssr50349 5 24601961 to 24602007 46 - TSS region transcription start site region 50349
Tssr50350 5 24602085 to 24602099 14 - TSS region transcription start site region 50350
Tssr50351 5 24602175 to 24602218 43 - TSS region transcription start site region 50351
Tssr50352 5 24602229 to 24602288 59 - TSS region transcription start site region 50352
Tssr50353 5 24603114 to 24603122 8 - TSS region transcription start site region 50353
Cpgi15615 5 24604218 to 24605266 1048 CpG island CpG island 15615
D5Mit180 5 24605715 to 24605857 142 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 180
Tssr50354 5 24606341 to 24606378 37 - TSS region transcription start site region 50354
Tssr50355 5 24622646 to 24622653 7 - TSS region transcription start site region 50355
Tssr50356 5 24622659 to 24622680 21 - TSS region transcription start site region 50356
Tssr50357 5 24623472 to 24623483 11 - TSS region transcription start site region 50357
Cpgi15616 5 24623915 to 24624705 790 CpG island CpG island 15616
Tssr50358 5 24624397 to 24624445 48 - TSS region transcription start site region 50358
Tssr45438 5 24645447 to 24645463 16 + TSS region transcription start site region 45438
1700022A21Rik 5 24645453 to 24648860 3407 + pseudogene RIKEN cDNA 1700022A21 gene
Tssr45439 5 24645465 to 24645470 5 + TSS region transcription start site region 45439
Tssr45440 5 24645482 to 24645483 1 + TSS region transcription start site region 45440
Tssr45441 5 24645494 to 24645500 6 + TSS region transcription start site region 45441
Tssr45442 5 24645501 to 24645506 5 + TSS region transcription start site region 45442
Tssr50359 5 24685352 to 24685389 37 - TSS region transcription start site region 50359
Tssr50360 5 24685414 to 24685439 25 - TSS region transcription start site region 50360
Cpgi15617 5 24685444 to 24686366 922 CpG island CpG island 15617
Nub1 5 24685815 to 24710378 24563 + protein coding gene negative regulator of ubiquitin-like proteins 1
Tssr45443 5 24685815 to 24685819 4 + TSS region transcription start site region 45443
Tssr45444 5 24685833 to 24685853 20 + TSS region transcription start site region 45444
Tssr45445 5 24685954 to 24686004 50 + TSS region transcription start site region 45445
Gm26648 5 24696902 to 24704690 7788 - antisense lncRNA gene predicted gene, 26648
Tssr45446 5 24697076 to 24697094 18 + TSS region transcription start site region 45446
Tssr50361 5 24704656 to 24704671 15 - TSS region transcription start site region 50361
Tssr45447 5 24709062 to 24709079 17 + TSS region transcription start site region 45447
Tssr45448 5 24709567 to 24709591 24 + TSS region transcription start site region 45448
Wdr86 5 24711738 to 24730727 18989 - protein coding gene WD repeat domain 86
Cpgi15618 5 24729885 to 24731174 1289 CpG island CpG island 15618
Tssr50362 5 24730611 to 24730622 11 - TSS region transcription start site region 50362
Tssr50363 5 24730635 to 24730655 20 - TSS region transcription start site region 50363
Gm42231 5 24730948 to 24740820 9872 + lncRNA gene predicted gene, 42231
Cpgi15619 5 24750787 to 24751422 635 CpG island CpG island 15619
Tssr45449 5 24750897 to 24750918 21 + TSS region transcription start site region 45449
Crygn 5 24751002 to 24757843 6841 - protein coding gene crystallin, gamma N
Tssr50364 5 24752155 to 24752176 21 - TSS region transcription start site region 50364
Gm33591 5 24757042 to 24758814 1772 + lncRNA gene predicted gene, 33591
Cpgi15620 5 24757735 to 24758041 306 CpG island CpG island 15620
Tssr50365 5 24757843 to 24757856 13 - TSS region transcription start site region 50365
Cpgi15621 5 24778692 to 24779066 374 CpG island CpG island 15621
Rheb 5 24802823 to 24842361 39538 - protein coding gene Ras homolog enriched in brain
Tssr50366 5 24813993 to 24813998 5 - TSS region transcription start site region 50366
Gm25363 5 24820593 to 24820837 244 - unclassified non-coding RNA gene predicted gene, 25363
Tssr50367 5 24830048 to 24830055 7 - TSS region transcription start site region 50367
Cpgi15622 5 24841731 to 24843395 1664 CpG island CpG island 15622
Tssr50368 5 24842307 to 24842318 11 - TSS region transcription start site region 50368
Tssr50369 5 24842357 to 24842453 96 - TSS region transcription start site region 50369
Tssr50370 5 24842456 to 24842467 11 - TSS region transcription start site region 50370
Tssr50371 5 24842470 to 24842481 11 - TSS region transcription start site region 50371
Tssr50372 5 24842509 to 24842520 11 - TSS region transcription start site region 50372
Tssr50373 5 24842551 to 24842571 20 - TSS region transcription start site region 50373
Tssr50374 5 24842579 to 24842624 45 - TSS region transcription start site region 50374
Tssr45450 5 24842988 to 24843001 13 + TSS region transcription start site region 45450
Prkag2 5 24862744 to 25100642 237898 - protein coding gene protein kinase, AMP-activated, gamma 2 non-catalytic subunit
Prkag2os2 5 24873544 to 24875934 2390 + antisense lncRNA gene protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 2
Tssr50375 5 24889914 to 24889927 13 - TSS region transcription start site region 50375
Tssr50376 5 24902445 to 24902456 11 - TSS region transcription start site region 50376
Prkag2os1 5 24902569 to 24906849 4280 + antisense lncRNA gene protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1
2900019A20Rik 5 24903367 to 24904159 792 unclassified gene RIKEN cDNA 2900019A20 gene
Cpgi15623 5 24907712 to 24909096 1384 CpG island CpG island 15623
Tssr50377 5 24908374 to 24908428 54 - TSS region transcription start site region 50377
Tssr50378 5 24908430 to 24908482 52 - TSS region transcription start site region 50378
Tssr50379 5 24908560 to 24908583 23 - TSS region transcription start site region 50379
Tssr50380 5 24908671 to 24908683 12 - TSS region transcription start site region 50380
Tssr50381 5 24908763 to 24908777 14 - TSS region transcription start site region 50381
Imrfq1 5 24919119 to 24919241 122 QTL immune response to Factor IX QTL 1
Del(5D5Mit348-D5Mit389)6Jcs 5 24919119 to 30647294 5728175 complex/cluster/region deletion, Chr 5, John C. Schimenti 6
D5Mit348 5 24919119 to 24919241 122 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 348
Tssr45451 5 24919587 to 24919592 5 + TSS region transcription start site region 45451
Tssr50382 5 24925383 to 24925397 14 - TSS region transcription start site region 50382
Tssr50383 5 24925406 to 24925420 14 - TSS region transcription start site region 50383
D5Mit349 5 24969162 to 24969301 139 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 349
Tssr45452 5 24985840 to 24985862 22 + TSS region transcription start site region 45452
1500035N22Rik 5 24985842 to 24998168 12326 + lincRNA gene RIKEN cDNA 1500035N22 gene
Tssr50384 5 24995676 to 24995681 5 - TSS region transcription start site region 50384
Tssr50385 5 24995693 to 24995707 14 - TSS region transcription start site region 50385
Tssr50386 5 24995748 to 24995759 11 - TSS region transcription start site region 50386
Tssr50387 5 24995800 to 24995811 11 - TSS region transcription start site region 50387
Tssr50388 5 24995859 to 24995866 7 - TSS region transcription start site region 50388
Tssr50389 5 24995884 to 24995919 35 - TSS region transcription start site region 50389
Tssr45453 5 24996033 to 24996050 17 + TSS region transcription start site region 45453
D5Mit74 5 25029769 to 25029984 215 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 74
Tssr50390 5 25059442 to 25059453 11 - TSS region transcription start site region 50390
Tssr50391 5 25059617 to 25059627 10 - TSS region transcription start site region 50391
Cpgi15624 5 25081649 to 25081878 229 CpG island CpG island 15624
Gm42232 5 25097747 to 25100004 2257 - lncRNA gene predicted gene, 42232
Cpgi15625 5 25099356 to 25101535 2179 CpG island CpG island 15625
Tssr50392 5 25100189 to 25100212 23 - TSS region transcription start site region 50392
Tssr50393 5 25100220 to 25100232 12 - TSS region transcription start site region 50393
Tssr50394 5 25100400 to 25100457 57 - TSS region transcription start site region 50394
Tssr50395 5 25100579 to 25100586 7 - TSS region transcription start site region 50395
Tssr50396 5 25100596 to 25100614 18 - TSS region transcription start site region 50396
Tssr50397 5 25100624 to 25100657 33 - TSS region transcription start site region 50397
Tssr45454 5 25100700 to 25100759 59 + TSS region transcription start site region 45454
Tssr50398 5 25100890 to 25100932 42 - TSS region transcription start site region 50398
Tssr45455 5 25100923 to 25100988 65 + TSS region transcription start site region 45455
2900005J15Rik 5 25100975 to 25103007 2032 + lncRNA gene RIKEN cDNA 2900005J15 gene
Tssr50399 5 25101052 to 25101064 12 - TSS region transcription start site region 50399
Gm42233 5 25119371 to 25128316 8945 + lncRNA gene predicted gene, 42233
Gm19088 5 25126153 to 25126706 553 + pseudogene predicted gene, 19088
Gm33836 5 25167831 to 25175413 7582 + lncRNA gene predicted gene, 33836
Gm26051 5 25168372 to 25168464 92 - miRNA gene predicted gene, 26051