Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:24455401-24655421

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Agap3 5 24452177 to 24502047 49870 + protein coding gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
Tssr45428 5 24471866 to 24471870 4 + TSS region transcription start site region 45428
Tssr45429 5 24473608 to 24473614 6 + TSS region transcription start site region 45429
Cpgi15604 5 24473946 to 24475622 1676 CpG island CpG island 15604
Tssr45430 5 24474155 to 24474184 29 + TSS region transcription start site region 45430
Tssr50328 5 24475598 to 24475610 12 - TSS region transcription start site region 50328
Tssr45431 5 24482769 to 24482774 5 + TSS region transcription start site region 45431
Tssr45432 5 24483904 to 24483921 17 + TSS region transcription start site region 45432
Gbx1 5 24504426 to 24526848 22422 - protein coding gene gastrulation brain homeobox 1
Cpgi15605 5 24504586 to 24505052 466 CpG island CpG island 15605
Cpgi15606 5 24525604 to 24527512 1908 CpG island CpG island 15606
Tssr50329 5 24526733 to 24526739 6 - TSS region transcription start site region 50329
Cpgi15607 5 24530135 to 24530572 437 CpG island CpG island 15607
Asb10 5 24532697 to 24540978 8281 - protein coding gene ankyrin repeat and SOCS box-containing 10
Cpgi15608 5 24537654 to 24537927 273 CpG island CpG island 15608
Tssr50330 5 24540378 to 24540383 5 - TSS region transcription start site region 50330
Tssr50331 5 24540384 to 24540395 11 - TSS region transcription start site region 50331
Tssr50332 5 24540413 to 24540422 9 - TSS region transcription start site region 50332
Tssr50333 5 24540423 to 24540426 3 - TSS region transcription start site region 50333
Tssr50334 5 24540439 to 24540451 12 - TSS region transcription start site region 50334
Tssr50335 5 24540940 to 24540950 10 - TSS region transcription start site region 50335
Tssr50336 5 24540976 to 24541008 32 - TSS region transcription start site region 50336
Iqca1l 5 24543434 to 24555469 12035 - protein coding gene IQ motif containing with AAA domain 1 like
Cpgi15609 5 24554448 to 24554707 259 CpG island CpG island 15609
Tssr50337 5 24555401 to 24555421 20 - TSS region transcription start site region 50337
Tssr50338 5 24555428 to 24555440 12 - TSS region transcription start site region 50338
Abcf2 5 24565345 to 24577467 12122 - protein coding gene ATP-binding cassette, sub-family F (GCN20), member 2
Cpgi15610 5 24576769 to 24578001 1232 CpG island CpG island 15610
Tssr50339 5 24577309 to 24577320 11 - TSS region transcription start site region 50339
Tssr50340 5 24577370 to 24577429 59 - TSS region transcription start site region 50340
Tssr50341 5 24577477 to 24577493 16 - TSS region transcription start site region 50341
Tssr45433 5 24577718 to 24577760 42 + TSS region transcription start site region 45433
Gm10221 5 24581554 to 24581862 308 - pseudogene predicted gene 10221
Cpgi15611 5 24586449 to 24587202 753 CpG island CpG island 15611
Tssr45434 5 24586707 to 24586718 11 + TSS region transcription start site region 45434
Tssr45435 5 24586721 to 24586794 73 + TSS region transcription start site region 45435
Chpf2 5 24586741 to 24594556 7815 + protein coding gene chondroitin polymerizing factor 2
Tssr45436 5 24586798 to 24586822 24 + TSS region transcription start site region 45436
Tssr45437 5 24587137 to 24587165 28 + TSS region transcription start site region 45437
Cpgi15612 5 24591200 to 24591907 707 CpG island CpG island 15612
Mir671 5 24592114 to 24592211 97 + miRNA gene microRNA 671
Smarcd3 5 24592622 to 24624456 31834 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
Cpgi15613 5 24598408 to 24599011 603 CpG island CpG island 15613
Tssr50342 5 24598634 to 24598654 20 - TSS region transcription start site region 50342
Tssr50343 5 24598722 to 24598766 44 - TSS region transcription start site region 50343
Tssr50344 5 24598904 to 24598918 14 - TSS region transcription start site region 50344
Tssr50345 5 24598919 to 24598929 10 - TSS region transcription start site region 50345
Tssr50346 5 24598933 to 24598955 22 - TSS region transcription start site region 50346
Cpgi15614 5 24601209 to 24602894 1685 CpG island CpG island 15614
Tssr50347 5 24601858 to 24601904 46 - TSS region transcription start site region 50347
Tssr50348 5 24601915 to 24601922 7 - TSS region transcription start site region 50348
Tssr50349 5 24601961 to 24602007 46 - TSS region transcription start site region 50349
Tssr50350 5 24602085 to 24602099 14 - TSS region transcription start site region 50350
Tssr50351 5 24602175 to 24602218 43 - TSS region transcription start site region 50351
Tssr50352 5 24602229 to 24602288 59 - TSS region transcription start site region 50352
Tssr50353 5 24603114 to 24603122 8 - TSS region transcription start site region 50353
Cpgi15615 5 24604218 to 24605266 1048 CpG island CpG island 15615
D5Mit180 5 24605715 to 24605857 142 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 180
Tssr50354 5 24606341 to 24606378 37 - TSS region transcription start site region 50354
Tssr50355 5 24622646 to 24622653 7 - TSS region transcription start site region 50355
Tssr50356 5 24622659 to 24622680 21 - TSS region transcription start site region 50356
Tssr50357 5 24623472 to 24623483 11 - TSS region transcription start site region 50357
Cpgi15616 5 24623915 to 24624705 790 CpG island CpG island 15616
Tssr50358 5 24624397 to 24624445 48 - TSS region transcription start site region 50358
Tssr45438 5 24645447 to 24645463 16 + TSS region transcription start site region 45438
1700022A21Rik 5 24645453 to 24648860 3407 + pseudogene RIKEN cDNA 1700022A21 gene
Tssr45439 5 24645465 to 24645470 5 + TSS region transcription start site region 45439
Tssr45440 5 24645482 to 24645483 1 + TSS region transcription start site region 45440
Tssr45441 5 24645494 to 24645500 6 + TSS region transcription start site region 45441
Tssr45442 5 24645501 to 24645506 5 + TSS region transcription start site region 45442