Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:24372769-24592774

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nos3 5 24364819 to 24384474 19655 + protein coding gene nitric oxide synthase 3, endothelial cell
Gm15587 5 24366192 to 24383614 17422 - antisense lncRNA gene predicted gene 15587
Tssr50313 5 24373937 to 24373963 26 - TSS region transcription start site region 50313
Cpgi15595 5 24383291 to 24383978 687 CpG island CpG island 15595
Tssr45409 5 24383496 to 24383521 25 + TSS region transcription start site region 45409
Tssr45410 5 24383547 to 24383561 14 + TSS region transcription start site region 45410
Tssr50314 5 24383608 to 24383621 13 - TSS region transcription start site region 50314
Atg9b 5 24384181 to 24392143 7962 - protein coding gene autophagy related 9B
Cpgi15596 5 24387314 to 24388691 1377 CpG island CpG island 15596
Tssr50315 5 24391945 to 24391961 16 - TSS region transcription start site region 50315
Tssr50316 5 24391964 to 24392007 43 - TSS region transcription start site region 50316
Tssr50317 5 24392012 to 24392031 19 - TSS region transcription start site region 50317
Tssr50318 5 24392490 to 24392494 4 - TSS region transcription start site region 50318
Tssr50319 5 24392679 to 24392698 19 - TSS region transcription start site region 50319
Tssr45411 5 24393640 to 24393664 24 + TSS region transcription start site region 45411
Abcb8 5 24393681 to 24409947 16266 + protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 8
Cpgi15597 5 24394236 to 24394756 520 CpG island CpG island 15597
Tssr45412 5 24394388 to 24394430 42 + TSS region transcription start site region 45412
Tssr45413 5 24413382 to 24413398 16 + TSS region transcription start site region 45413
Asic3 5 24413392 to 24417835 4443 + protein coding gene acid-sensing (proton-gated) ion channel 3
Tssr45414 5 24413406 to 24413420 14 + TSS region transcription start site region 45414
Cpgi15598 5 24416154 to 24416763 609 CpG island CpG island 15598
Cdk5 5 24418241 to 24423530 5289 - protein coding gene cyclin-dependent kinase 5
Cpgi15599 5 24423201 to 24424375 1174 CpG island CpG island 15599
Tssr50320 5 24423492 to 24423501 9 - TSS region transcription start site region 50320
Tssr50321 5 24423516 to 24423538 22 - TSS region transcription start site region 50321
Tssr50322 5 24423541 to 24423589 48 - TSS region transcription start site region 50322
Tssr45415 5 24423805 to 24423848 43 + TSS region transcription start site region 45415
Slc4a2 5 24423837 to 24440950 17113 + protein coding gene solute carrier family 4 (anion exchanger), member 2
Tssr45416 5 24423851 to 24423865 14 + TSS region transcription start site region 45416
Tssr45417 5 24423914 to 24423958 44 + TSS region transcription start site region 45417
Cpgi15600 5 24424780 to 24425865 1085 CpG island CpG island 15600
Tssr45418 5 24425250 to 24425291 41 + TSS region transcription start site region 45418
Tssr45419 5 24426842 to 24426867 25 + TSS region transcription start site region 45419
Tssr45420 5 24427507 to 24427518 11 + TSS region transcription start site region 45420
Tssr45421 5 24428211 to 24428243 32 + TSS region transcription start site region 45421
Tssr45422 5 24428248 to 24428268 20 + TSS region transcription start site region 45422
Tssr45423 5 24428760 to 24428772 12 + TSS region transcription start site region 45423
Tssr45424 5 24430718 to 24430729 11 + TSS region transcription start site region 45424
Tssr45425 5 24430771 to 24430779 8 + TSS region transcription start site region 45425
Gm22333 5 24438486 to 24438586 100 - snRNA gene predicted gene, 22333
Fastk 5 24441039 to 24445282 4243 - protein coding gene Fas-activated serine/threonine kinase
Cpgi15601 5 24444534 to 24446057 1523 CpG island CpG island 15601
Tssr50323 5 24445166 to 24445220 54 - TSS region transcription start site region 50323
Tssr50324 5 24445224 to 24445252 28 - TSS region transcription start site region 50324
Tssr50325 5 24445254 to 24445275 21 - TSS region transcription start site region 50325
Tmub1 5 24445458 to 24447854 2396 - protein coding gene transmembrane and ubiquitin-like domain containing 1
Cpgi15602 5 24447575 to 24448089 514 CpG island CpG island 15602
Tssr50326 5 24447775 to 24447830 55 - TSS region transcription start site region 50326
2310074N15Rik 5 24447908 to 24448489 581 + lincRNA gene RIKEN cDNA 2310074N15 gene
Gm10472 5 24449608 to 24451709 2101 - protein coding gene predicted gene 10472
Cpgi15603 5 24451437 to 24453318 1881 CpG island CpG island 15603
Tssr50327 5 24451702 to 24451746 44 - TSS region transcription start site region 50327
Tssr45426 5 24451937 to 24451969 32 + TSS region transcription start site region 45426
Tssr45427 5 24451973 to 24451990 17 + TSS region transcription start site region 45427
Agap3 5 24452177 to 24502047 49870 + protein coding gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
Tssr45428 5 24471866 to 24471870 4 + TSS region transcription start site region 45428
Tssr45429 5 24473608 to 24473614 6 + TSS region transcription start site region 45429
Cpgi15604 5 24473946 to 24475622 1676 CpG island CpG island 15604
Tssr45430 5 24474155 to 24474184 29 + TSS region transcription start site region 45430
Tssr50328 5 24475598 to 24475610 12 - TSS region transcription start site region 50328
Tssr45431 5 24482769 to 24482774 5 + TSS region transcription start site region 45431
Tssr45432 5 24483904 to 24483921 17 + TSS region transcription start site region 45432
Gbx1 5 24504426 to 24526848 22422 - protein coding gene gastrulation brain homeobox 1
Cpgi15605 5 24504586 to 24505052 466 CpG island CpG island 15605
Cpgi15606 5 24525604 to 24527512 1908 CpG island CpG island 15606
Tssr50329 5 24526733 to 24526739 6 - TSS region transcription start site region 50329
Cpgi15607 5 24530135 to 24530572 437 CpG island CpG island 15607
Asb10 5 24532697 to 24540978 8281 - protein coding gene ankyrin repeat and SOCS box-containing 10
Cpgi15608 5 24537654 to 24537927 273 CpG island CpG island 15608
Tssr50330 5 24540378 to 24540383 5 - TSS region transcription start site region 50330
Tssr50331 5 24540384 to 24540395 11 - TSS region transcription start site region 50331
Tssr50332 5 24540413 to 24540422 9 - TSS region transcription start site region 50332
Tssr50333 5 24540423 to 24540426 3 - TSS region transcription start site region 50333
Tssr50334 5 24540439 to 24540451 12 - TSS region transcription start site region 50334
Tssr50335 5 24540940 to 24540950 10 - TSS region transcription start site region 50335
Tssr50336 5 24540976 to 24541008 32 - TSS region transcription start site region 50336
Iqca1l 5 24543434 to 24555469 12035 - protein coding gene IQ motif containing with AAA domain 1 like
Cpgi15609 5 24554448 to 24554707 259 CpG island CpG island 15609
Tssr50337 5 24555401 to 24555421 20 - TSS region transcription start site region 50337
Tssr50338 5 24555428 to 24555440 12 - TSS region transcription start site region 50338
Abcf2 5 24565345 to 24577467 12122 - protein coding gene ATP-binding cassette, sub-family F (GCN20), member 2
Cpgi15610 5 24576769 to 24578001 1232 CpG island CpG island 15610
Tssr50339 5 24577309 to 24577320 11 - TSS region transcription start site region 50339
Tssr50340 5 24577370 to 24577429 59 - TSS region transcription start site region 50340
Tssr50341 5 24577477 to 24577493 16 - TSS region transcription start site region 50341
Tssr45433 5 24577718 to 24577760 42 + TSS region transcription start site region 45433
Gm10221 5 24581554 to 24581862 308 - pseudogene predicted gene 10221
Cpgi15611 5 24586449 to 24587202 753 CpG island CpG island 15611
Tssr45434 5 24586707 to 24586718 11 + TSS region transcription start site region 45434
Tssr45435 5 24586721 to 24586794 73 + TSS region transcription start site region 45435
Chpf2 5 24586741 to 24594556 7815 + protein coding gene chondroitin polymerizing factor 2
Tssr45436 5 24586798 to 24586822 24 + TSS region transcription start site region 45436
Tssr45437 5 24587137 to 24587165 28 + TSS region transcription start site region 45437
Cpgi15612 5 24591200 to 24591907 707 CpG island CpG island 15612
Mir671 5 24592114 to 24592211 97 + miRNA gene microRNA 671
Smarcd3 5 24592622 to 24624456 31834 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3