Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:23852735-25663041

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325 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42228 5 23849454 to 23852770 3316 - lncRNA gene predicted gene, 42228
2700038G22Rik 5 23850597 to 23855033 4436 + lincRNA gene RIKEN cDNA 2700038G22 gene
Gm9534 5 23863248 to 23892647 29399 - pseudogene predicted gene 9534
Tssr50297 5 23871360 to 23871365 5 - TSS region transcription start site region 50297
D5Jcs55 5 23894739 to 23894881 142 DNA segment DNA segment, Chr 5, John C. Schimenti 55
Fam126a 5 23915276 to 24030690 115414 - protein coding gene family with sequence similarity 126, member A
Tssr50298 5 23922660 to 23922694 34 - TSS region transcription start site region 50298
Tssr50299 5 23922914 to 23922929 15 - TSS region transcription start site region 50299
Gm6745 5 24009887 to 24010412 525 - pseudogene predicted gene 6745
Cpgi15588 5 24029681 to 24030939 1258 CpG island CpG island 15588
Tssr50300 5 24030297 to 24030319 22 - TSS region transcription start site region 50300
Tssr50301 5 24030626 to 24030646 20 - TSS region transcription start site region 50301
Tssr50302 5 24030649 to 24030707 58 - TSS region transcription start site region 50302
D5Mit381 5 24031043 to 24031192 149 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology-381
Gm18038 5 24085244 to 24085728 484 + pseudogene predicted gene, 18038
Cpgi15589 5 24100365 to 24101322 957 CpG island CpG island 15589
Tssr50303 5 24100467 to 24100485 18 - TSS region transcription start site region 50303
Tssr45399 5 24100578 to 24100669 91 + TSS region transcription start site region 45399
Klhl7 5 24100605 to 24160792 60187 + protein coding gene kelch-like 7
Tssr45400 5 24100695 to 24100698 3 + TSS region transcription start site region 45400
Tssr45401 5 24105010 to 24105015 5 + TSS region transcription start site region 45401
Gm3724 5 24118316 to 24118664 348 - pseudogene predicted gene 3724
Tssr45402 5 24124828 to 24124834 6 + TSS region transcription start site region 45402
Tssr45403 5 24128146 to 24128151 5 + TSS region transcription start site region 45403
Gm43389 5 24153294 to 24155888 2594 + unclassified gene predicted gene 43389
Tssr45404 5 24159845 to 24159848 3 + TSS region transcription start site region 45404
Cpgi15590 5 24164803 to 24165375 572 CpG island CpG island 15590
Nupl2 5 24164963 to 24184013 19050 + protein coding gene nucleoporin like 2
Tssr45405 5 24164985 to 24165044 59 + TSS region transcription start site region 45405
Tssr45406 5 24165048 to 24165055 7 + TSS region transcription start site region 45406
Gm5575 5 24209327 to 24209724 397 - pseudogene predicted gene 5575
Gm43828 5 24232409 to 24233047 638 + pseudogene predicted gene 43828
D5Mit179.1 5 24233430 to 24233539 109 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 179.1
D5Mit179 5 24233575 to 24233700 125 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 179
Gm43827 5 24240512 to 24241901 1389 + pseudogene predicted gene 43827
Tssr45407 5 24256707 to 24256728 21 + TSS region transcription start site region 45407
Gm9836 5 24256822 to 24257037 215 + pseudogene predicted pseudogene 9836
Tssr50304 5 24266715 to 24266752 37 - TSS region transcription start site region 50304
Gm33476 5 24301261 to 24306476 5215 + lncRNA gene predicted gene, 33476
Kcnh2 5 24319589 to 24351604 32015 - protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 2
Cpgi15591 5 24324975 to 24325965 990 CpG island CpG island 15591
Tssr50305 5 24329271 to 24329283 12 - TSS region transcription start site region 50305
Tssr50306 5 24329556 to 24329598 42 - TSS region transcription start site region 50306
Cpgi15592 5 24329562 to 24329717 155 CpG island CpG island 15592
Gm15589 5 24333923 to 24337216 3293 + antisense lncRNA gene predicted gene 15589
Tssr50307 5 24344529 to 24344544 15 - TSS region transcription start site region 50307
Tssr50308 5 24344550 to 24344567 17 - TSS region transcription start site region 50308
Tssr50309 5 24344572 to 24344586 14 - TSS region transcription start site region 50309
Cpgi15593 5 24347800 to 24349068 1268 CpG island CpG island 15593
Cpgi15594 5 24350863 to 24352483 1620 CpG island CpG island 15594
Tssr50310 5 24351072 to 24351116 44 - TSS region transcription start site region 50310
Tssr50311 5 24351628 to 24351647 19 - TSS region transcription start site region 50311
Tssr50312 5 24351657 to 24351702 45 - TSS region transcription start site region 50312
Tssr45408 5 24364804 to 24364824 20 + TSS region transcription start site region 45408
Nos3 5 24364819 to 24384474 19655 + protein coding gene nitric oxide synthase 3, endothelial cell
Gm15587 5 24366192 to 24383614 17422 - antisense lncRNA gene predicted gene 15587
D5Jcs56 5 24371083 to 24371236 153 DNA segment DNA segment, Chr 5, John C. Schimenti 56
Tssr50313 5 24373937 to 24373963 26 - TSS region transcription start site region 50313
Cpgi15595 5 24383291 to 24383978 687 CpG island CpG island 15595
Tssr45409 5 24383496 to 24383521 25 + TSS region transcription start site region 45409
Tssr45410 5 24383547 to 24383561 14 + TSS region transcription start site region 45410
Tssr50314 5 24383608 to 24383621 13 - TSS region transcription start site region 50314
Atg9b 5 24384181 to 24392143 7962 - protein coding gene autophagy related 9B
Cpgi15596 5 24387314 to 24388691 1377 CpG island CpG island 15596
Tssr50315 5 24391945 to 24391961 16 - TSS region transcription start site region 50315
Tssr50316 5 24391964 to 24392007 43 - TSS region transcription start site region 50316
Tssr50317 5 24392012 to 24392031 19 - TSS region transcription start site region 50317
Tssr50318 5 24392490 to 24392494 4 - TSS region transcription start site region 50318
Tssr50319 5 24392679 to 24392698 19 - TSS region transcription start site region 50319
Tssr45411 5 24393640 to 24393664 24 + TSS region transcription start site region 45411
Abcb8 5 24393681 to 24409947 16266 + protein coding gene ATP-binding cassette, sub-family B (MDR/TAP), member 8
Cpgi15597 5 24394236 to 24394756 520 CpG island CpG island 15597
Tssr45412 5 24394388 to 24394430 42 + TSS region transcription start site region 45412
Tssr45413 5 24413382 to 24413398 16 + TSS region transcription start site region 45413
Asic3 5 24413392 to 24417835 4443 + protein coding gene acid-sensing (proton-gated) ion channel 3
Tssr45414 5 24413406 to 24413420 14 + TSS region transcription start site region 45414
Cpgi15598 5 24416154 to 24416763 609 CpG island CpG island 15598
Cdk5 5 24418241 to 24423530 5289 - protein coding gene cyclin-dependent kinase 5
Cpgi15599 5 24423201 to 24424375 1174 CpG island CpG island 15599
Tssr50320 5 24423492 to 24423501 9 - TSS region transcription start site region 50320
Tssr50321 5 24423516 to 24423538 22 - TSS region transcription start site region 50321
Tssr50322 5 24423541 to 24423589 48 - TSS region transcription start site region 50322
Tssr45415 5 24423805 to 24423848 43 + TSS region transcription start site region 45415
Slc4a2 5 24423837 to 24440950 17113 + protein coding gene solute carrier family 4 (anion exchanger), member 2
Tssr45416 5 24423851 to 24423865 14 + TSS region transcription start site region 45416
Tssr45417 5 24423914 to 24423958 44 + TSS region transcription start site region 45417
Cpgi15600 5 24424780 to 24425865 1085 CpG island CpG island 15600
Tssr45418 5 24425250 to 24425291 41 + TSS region transcription start site region 45418
Tssr45419 5 24426842 to 24426867 25 + TSS region transcription start site region 45419
Tssr45420 5 24427507 to 24427518 11 + TSS region transcription start site region 45420
Tssr45421 5 24428211 to 24428243 32 + TSS region transcription start site region 45421
Tssr45422 5 24428248 to 24428268 20 + TSS region transcription start site region 45422
Tssr45423 5 24428760 to 24428772 12 + TSS region transcription start site region 45423
Tssr45424 5 24430718 to 24430729 11 + TSS region transcription start site region 45424
Tssr45425 5 24430771 to 24430779 8 + TSS region transcription start site region 45425
Gm22333 5 24438486 to 24438586 100 - snRNA gene predicted gene, 22333
Fastk 5 24441039 to 24445282 4243 - protein coding gene Fas-activated serine/threonine kinase
Cpgi15601 5 24444534 to 24446057 1523 CpG island CpG island 15601
Tssr50323 5 24445166 to 24445220 54 - TSS region transcription start site region 50323
Tssr50324 5 24445224 to 24445252 28 - TSS region transcription start site region 50324
Tssr50325 5 24445254 to 24445275 21 - TSS region transcription start site region 50325
Tmub1 5 24445458 to 24447854 2396 - protein coding gene transmembrane and ubiquitin-like domain containing 1
Cpgi15602 5 24447575 to 24448089 514 CpG island CpG island 15602
Tssr50326 5 24447775 to 24447830 55 - TSS region transcription start site region 50326
2310074N15Rik 5 24447908 to 24448489 581 + lincRNA gene RIKEN cDNA 2310074N15 gene
Gm10472 5 24449608 to 24451709 2101 - protein coding gene predicted gene 10472
Cpgi15603 5 24451437 to 24453318 1881 CpG island CpG island 15603
Tssr50327 5 24451702 to 24451746 44 - TSS region transcription start site region 50327
Tssr45426 5 24451937 to 24451969 32 + TSS region transcription start site region 45426
Tssr45427 5 24451973 to 24451990 17 + TSS region transcription start site region 45427
Agap3 5 24452177 to 24502047 49870 + protein coding gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
Tssr45428 5 24471866 to 24471870 4 + TSS region transcription start site region 45428
Tssr45429 5 24473608 to 24473614 6 + TSS region transcription start site region 45429
Cpgi15604 5 24473946 to 24475622 1676 CpG island CpG island 15604
Tssr45430 5 24474155 to 24474184 29 + TSS region transcription start site region 45430
Tssr50328 5 24475598 to 24475610 12 - TSS region transcription start site region 50328
Tssr45431 5 24482769 to 24482774 5 + TSS region transcription start site region 45431
Tssr45432 5 24483904 to 24483921 17 + TSS region transcription start site region 45432
Gbx1 5 24504426 to 24526848 22422 - protein coding gene gastrulation brain homeobox 1
Cpgi15605 5 24504586 to 24505052 466 CpG island CpG island 15605
Cpgi15606 5 24525604 to 24527512 1908 CpG island CpG island 15606
Tssr50329 5 24526733 to 24526739 6 - TSS region transcription start site region 50329
Cpgi15607 5 24530135 to 24530572 437 CpG island CpG island 15607
Asb10 5 24532697 to 24540978 8281 - protein coding gene ankyrin repeat and SOCS box-containing 10
Cpgi15608 5 24537654 to 24537927 273 CpG island CpG island 15608
Tssr50330 5 24540378 to 24540383 5 - TSS region transcription start site region 50330
Tssr50331 5 24540384 to 24540395 11 - TSS region transcription start site region 50331
Tssr50332 5 24540413 to 24540422 9 - TSS region transcription start site region 50332
Tssr50333 5 24540423 to 24540426 3 - TSS region transcription start site region 50333
Tssr50334 5 24540439 to 24540451 12 - TSS region transcription start site region 50334
Tssr50335 5 24540940 to 24540950 10 - TSS region transcription start site region 50335
Tssr50336 5 24540976 to 24541008 32 - TSS region transcription start site region 50336
Iqca1l 5 24543434 to 24555469 12035 - protein coding gene IQ motif containing with AAA domain 1 like
Cpgi15609 5 24554448 to 24554707 259 CpG island CpG island 15609
Tssr50337 5 24555401 to 24555421 20 - TSS region transcription start site region 50337
Tssr50338 5 24555428 to 24555440 12 - TSS region transcription start site region 50338
Abcf2 5 24565345 to 24577467 12122 - protein coding gene ATP-binding cassette, sub-family F (GCN20), member 2
Cpgi15610 5 24576769 to 24578001 1232 CpG island CpG island 15610
Tssr50339 5 24577309 to 24577320 11 - TSS region transcription start site region 50339
Tssr50340 5 24577370 to 24577429 59 - TSS region transcription start site region 50340
Tssr50341 5 24577477 to 24577493 16 - TSS region transcription start site region 50341
Tssr45433 5 24577718 to 24577760 42 + TSS region transcription start site region 45433
Gm10221 5 24581554 to 24581862 308 - pseudogene predicted gene 10221
Cpgi15611 5 24586449 to 24587202 753 CpG island CpG island 15611
Tssr45434 5 24586707 to 24586718 11 + TSS region transcription start site region 45434
Tssr45435 5 24586721 to 24586794 73 + TSS region transcription start site region 45435
Chpf2 5 24586741 to 24594556 7815 + protein coding gene chondroitin polymerizing factor 2
Tssr45436 5 24586798 to 24586822 24 + TSS region transcription start site region 45436
Tssr45437 5 24587137 to 24587165 28 + TSS region transcription start site region 45437
Cpgi15612 5 24591200 to 24591907 707 CpG island CpG island 15612
Mir671 5 24592114 to 24592211 97 + miRNA gene microRNA 671
Smarcd3 5 24592622 to 24624456 31834 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
Cpgi15613 5 24598408 to 24599011 603 CpG island CpG island 15613
Tssr50342 5 24598634 to 24598654 20 - TSS region transcription start site region 50342
Tssr50343 5 24598722 to 24598766 44 - TSS region transcription start site region 50343
Tssr50344 5 24598904 to 24598918 14 - TSS region transcription start site region 50344
Tssr50345 5 24598919 to 24598929 10 - TSS region transcription start site region 50345
Tssr50346 5 24598933 to 24598955 22 - TSS region transcription start site region 50346
Cpgi15614 5 24601209 to 24602894 1685 CpG island CpG island 15614
Tssr50347 5 24601858 to 24601904 46 - TSS region transcription start site region 50347
Tssr50348 5 24601915 to 24601922 7 - TSS region transcription start site region 50348
Tssr50349 5 24601961 to 24602007 46 - TSS region transcription start site region 50349
Tssr50350 5 24602085 to 24602099 14 - TSS region transcription start site region 50350
Tssr50351 5 24602175 to 24602218 43 - TSS region transcription start site region 50351
Tssr50352 5 24602229 to 24602288 59 - TSS region transcription start site region 50352
Tssr50353 5 24603114 to 24603122 8 - TSS region transcription start site region 50353
Cpgi15615 5 24604218 to 24605266 1048 CpG island CpG island 15615
D5Mit180 5 24605715 to 24605857 142 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 180
Tssr50354 5 24606341 to 24606378 37 - TSS region transcription start site region 50354
Tssr50355 5 24622646 to 24622653 7 - TSS region transcription start site region 50355
Tssr50356 5 24622659 to 24622680 21 - TSS region transcription start site region 50356
Tssr50357 5 24623472 to 24623483 11 - TSS region transcription start site region 50357
Cpgi15616 5 24623915 to 24624705 790 CpG island CpG island 15616
Tssr50358 5 24624397 to 24624445 48 - TSS region transcription start site region 50358
Tssr45438 5 24645447 to 24645463 16 + TSS region transcription start site region 45438
1700022A21Rik 5 24645453 to 24648860 3407 + pseudogene RIKEN cDNA 1700022A21 gene
Tssr45439 5 24645465 to 24645470 5 + TSS region transcription start site region 45439
Tssr45440 5 24645482 to 24645483 1 + TSS region transcription start site region 45440
Tssr45441 5 24645494 to 24645500 6 + TSS region transcription start site region 45441
Tssr45442 5 24645501 to 24645506 5 + TSS region transcription start site region 45442
Tssr50359 5 24685352 to 24685389 37 - TSS region transcription start site region 50359
Tssr50360 5 24685414 to 24685439 25 - TSS region transcription start site region 50360
Cpgi15617 5 24685444 to 24686366 922 CpG island CpG island 15617
Tssr45443 5 24685815 to 24685819 4 + TSS region transcription start site region 45443
Nub1 5 24685815 to 24710378 24563 + protein coding gene negative regulator of ubiquitin-like proteins 1
Tssr45444 5 24685833 to 24685853 20 + TSS region transcription start site region 45444
Tssr45445 5 24685954 to 24686004 50 + TSS region transcription start site region 45445
Gm26648 5 24696902 to 24704690 7788 - antisense lncRNA gene predicted gene, 26648
Tssr45446 5 24697076 to 24697094 18 + TSS region transcription start site region 45446
Tssr50361 5 24704656 to 24704671 15 - TSS region transcription start site region 50361
Tssr45447 5 24709062 to 24709079 17 + TSS region transcription start site region 45447
Tssr45448 5 24709567 to 24709591 24 + TSS region transcription start site region 45448
Wdr86 5 24711738 to 24730727 18989 - protein coding gene WD repeat domain 86
Cpgi15618 5 24729885 to 24731174 1289 CpG island CpG island 15618
Tssr50362 5 24730611 to 24730622 11 - TSS region transcription start site region 50362
Tssr50363 5 24730635 to 24730655 20 - TSS region transcription start site region 50363
Gm42231 5 24730948 to 24740820 9872 + lncRNA gene predicted gene, 42231
Cpgi15619 5 24750787 to 24751422 635 CpG island CpG island 15619
Tssr45449 5 24750897 to 24750918 21 + TSS region transcription start site region 45449
Crygn 5 24751002 to 24757843 6841 - protein coding gene crystallin, gamma N