Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:23815276-24130690

35 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Rint1	5	23787711 to 23820369	32658	+	protein coding gene	RAD50 interactor 1
4933427G23Rik	5	23830133 to 23832436	2303	-	pseudogene	RIKEN cDNA 4933427G23 gene
Cpgi15585	5	23831073 to 23831794	721		CpG island	CpG island 15585
Gm22054	5	23836167 to 23836321	154	-	snRNA gene	predicted gene, 22054
Tomm7	5	23838944 to 23844145	5201	-	protein coding gene	translocase of outer mitochondrial membrane 7
Cpgi15586	5	23844016 to 23844448	432		CpG island	CpG island 15586
Tssr50296	5	23844085 to 23844151	66	-	TSS region	transcription start site region 50296
Gm42228	5	23849454 to 23852770	3316	-	lncRNA gene	predicted gene, 42228
Cpgi15587	5	23850374 to 23851024	650		CpG island	CpG island 15587
Tssr45397	5	23850575 to 23850589	14	+	TSS region	transcription start site region 45397
Tssr45398	5	23850590 to 23850607	17	+	TSS region	transcription start site region 45398
2700038G22Rik	5	23850597 to 23855033	4436	+	lincRNA gene	RIKEN cDNA 2700038G22 gene
Snord93	5	23852233 to 23852277	44	+	snoRNA gene	small nucleolar RNA, C/D box 93
Gm9534	5	23863248 to 23892647	29399	-	pseudogene	predicted gene 9534
Tssr50297	5	23871360 to 23871365	5	-	TSS region	transcription start site region 50297
D5Jcs55	5	23894739 to 23894881	142		DNA segment	DNA segment, Chr 5, John C. Schimenti 55
Fam126a	5	23915276 to 24030690	115414	-	protein coding gene	family with sequence similarity 126, member A
Tssr50298	5	23922660 to 23922694	34	-	TSS region	transcription start site region 50298
Tssr50299	5	23922914 to 23922929	15	-	TSS region	transcription start site region 50299
Gm6745	5	24009887 to 24010412	525	-	pseudogene	predicted gene 6745
Cpgi15588	5	24029681 to 24030939	1258		CpG island	CpG island 15588
Tssr50300	5	24030297 to 24030319	22	-	TSS region	transcription start site region 50300
Tssr50301	5	24030626 to 24030646	20	-	TSS region	transcription start site region 50301
Tssr50302	5	24030649 to 24030707	58	-	TSS region	transcription start site region 50302
D5Mit381	5	24031043 to 24031192	149		DNA segment	DNA Segment, Chr 5, Massachusetts Institute of Technology-381
Gm18038	5	24085244 to 24085728	484	+	pseudogene	predicted gene, 18038
Cpgi15589	5	24100365 to 24101322	957		CpG island	CpG island 15589
Tssr50303	5	24100467 to 24100485	18	-	TSS region	transcription start site region 50303
Tssr45399	5	24100578 to 24100669	91	+	TSS region	transcription start site region 45399
Klhl7	5	24100605 to 24160792	60187	+	protein coding gene	kelch-like 7
Tssr45400	5	24100695 to 24100698	3	+	TSS region	transcription start site region 45400
Tssr45401	5	24105010 to 24105015	5	+	TSS region	transcription start site region 45401
Gm3724	5	24118316 to 24118664	348	-	pseudogene	predicted gene 3724
Tssr45402	5	24124828 to 24124834	6	+	TSS region	transcription start site region 45402
Tssr45403	5	24128146 to 24128151	5	+	TSS region	transcription start site region 45403