Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:23785626-24275646

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15584 5 23787562 to 23788327 765 CpG island CpG island 15584
Tssr45395 5 23787691 to 23787751 60 + TSS region transcription start site region 45395
Rint1 5 23787711 to 23820369 32658 + protein coding gene RAD50 interactor 1
Tssr45396 5 23787757 to 23787774 17 + TSS region transcription start site region 45396
Gm43054 5 23790702 to 23791585 883 + unclassified gene predicted gene 43054
4933427G23Rik 5 23830133 to 23832436 2303 - pseudogene RIKEN cDNA 4933427G23 gene
Cpgi15585 5 23831073 to 23831794 721 CpG island CpG island 15585
Gm22054 5 23836167 to 23836321 154 - snRNA gene predicted gene, 22054
Tomm7 5 23838944 to 23844145 5201 - protein coding gene translocase of outer mitochondrial membrane 7
Cpgi15586 5 23844016 to 23844448 432 CpG island CpG island 15586
Tssr50296 5 23844085 to 23844151 66 - TSS region transcription start site region 50296
Gm42228 5 23849454 to 23852770 3316 - lncRNA gene predicted gene, 42228
Cpgi15587 5 23850374 to 23851024 650 CpG island CpG island 15587
Tssr45397 5 23850575 to 23850589 14 + TSS region transcription start site region 45397
Tssr45398 5 23850590 to 23850607 17 + TSS region transcription start site region 45398
2700038G22Rik 5 23850597 to 23855033 4436 + lincRNA gene RIKEN cDNA 2700038G22 gene
Snord93 5 23852233 to 23852277 44 + snoRNA gene small nucleolar RNA, C/D box 93
Gm9534 5 23863248 to 23892647 29399 - pseudogene predicted gene 9534
Tssr50297 5 23871360 to 23871365 5 - TSS region transcription start site region 50297
D5Jcs55 5 23894739 to 23894881 142 DNA segment DNA segment, Chr 5, John C. Schimenti 55
Fam126a 5 23915276 to 24030690 115414 - protein coding gene family with sequence similarity 126, member A
Tssr50298 5 23922660 to 23922694 34 - TSS region transcription start site region 50298
Tssr50299 5 23922914 to 23922929 15 - TSS region transcription start site region 50299
Gm6745 5 24009887 to 24010412 525 - pseudogene predicted gene 6745
Cpgi15588 5 24029681 to 24030939 1258 CpG island CpG island 15588
Tssr50300 5 24030297 to 24030319 22 - TSS region transcription start site region 50300
Tssr50301 5 24030626 to 24030646 20 - TSS region transcription start site region 50301
Tssr50302 5 24030649 to 24030707 58 - TSS region transcription start site region 50302
D5Mit381 5 24031043 to 24031192 149 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology-381
Gm18038 5 24085244 to 24085728 484 + pseudogene predicted gene, 18038
Cpgi15589 5 24100365 to 24101322 957 CpG island CpG island 15589
Tssr50303 5 24100467 to 24100485 18 - TSS region transcription start site region 50303
Tssr45399 5 24100578 to 24100669 91 + TSS region transcription start site region 45399
Klhl7 5 24100605 to 24160792 60187 + protein coding gene kelch-like 7
Tssr45400 5 24100695 to 24100698 3 + TSS region transcription start site region 45400
Tssr45401 5 24105010 to 24105015 5 + TSS region transcription start site region 45401
Gm3724 5 24118316 to 24118664 348 - pseudogene predicted gene 3724
Tssr45402 5 24124828 to 24124834 6 + TSS region transcription start site region 45402
Tssr45403 5 24128146 to 24128151 5 + TSS region transcription start site region 45403
Gm43389 5 24153294 to 24155888 2594 + unclassified gene predicted gene 43389
Tssr45404 5 24159845 to 24159848 3 + TSS region transcription start site region 45404
Cpgi15590 5 24164803 to 24165375 572 CpG island CpG island 15590
Nupl2 5 24164963 to 24184013 19050 + protein coding gene nucleoporin like 2
Tssr45405 5 24164985 to 24165044 59 + TSS region transcription start site region 45405
Tssr45406 5 24165048 to 24165055 7 + TSS region transcription start site region 45406
Gm5575 5 24209327 to 24209724 397 - pseudogene predicted gene 5575
Gm43828 5 24232409 to 24233047 638 + pseudogene predicted gene 43828
D5Mit179.1 5 24233430 to 24233539 109 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 179.1
D5Mit179 5 24233575 to 24233700 125 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 179
Gm43827 5 24240512 to 24241901 1389 + pseudogene predicted gene 43827
Tssr45407 5 24256707 to 24256728 21 + TSS region transcription start site region 45407
Gm9836 5 24256822 to 24257037 215 + pseudogene predicted pseudogene 9836
Tssr50304 5 24266715 to 24266752 37 - TSS region transcription start site region 50304