Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:23738944-23944145

27 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Pus7	5	23740648 to 23783711	43063	-	protein coding gene	pseudouridylate synthase 7
Cpgi15583	5	23782927 to 23783827	900		CpG island	CpG island 15583
Tssr50294	5	23783612 to 23783697	85	-	TSS region	transcription start site region 50294
Tssr50295	5	23783700 to 23783709	9	-	TSS region	transcription start site region 50295
Cpgi15584	5	23787562 to 23788327	765		CpG island	CpG island 15584
Tssr45395	5	23787691 to 23787751	60	+	TSS region	transcription start site region 45395
Rint1	5	23787711 to 23820369	32658	+	protein coding gene	RAD50 interactor 1
Tssr45396	5	23787757 to 23787774	17	+	TSS region	transcription start site region 45396
Gm43054	5	23790702 to 23791585	883	+	unclassified gene	predicted gene 43054
4933427G23Rik	5	23830133 to 23832436	2303	-	pseudogene	RIKEN cDNA 4933427G23 gene
Cpgi15585	5	23831073 to 23831794	721		CpG island	CpG island 15585
Gm22054	5	23836167 to 23836321	154	-	snRNA gene	predicted gene, 22054
Tomm7	5	23838944 to 23844145	5201	-	protein coding gene	translocase of outer mitochondrial membrane 7
Cpgi15586	5	23844016 to 23844448	432		CpG island	CpG island 15586
Tssr50296	5	23844085 to 23844151	66	-	TSS region	transcription start site region 50296
Gm42228	5	23849454 to 23852770	3316	-	lncRNA gene	predicted gene, 42228
Cpgi15587	5	23850374 to 23851024	650		CpG island	CpG island 15587
Tssr45397	5	23850575 to 23850589	14	+	TSS region	transcription start site region 45397
Tssr45398	5	23850590 to 23850607	17	+	TSS region	transcription start site region 45398
2700038G22Rik	5	23850597 to 23855033	4436	+	lincRNA gene	RIKEN cDNA 2700038G22 gene
Snord93	5	23852233 to 23852277	44	+	snoRNA gene	small nucleolar RNA, C/D box 93
Gm9534	5	23863248 to 23892647	29399	-	pseudogene	predicted gene 9534
Tssr50297	5	23871360 to 23871365	5	-	TSS region	transcription start site region 50297
D5Jcs55	5	23894739 to 23894881	142		DNA segment	DNA segment, Chr 5, John C. Schimenti 55
Fam126a	5	23915276 to 24030690	115414	-	protein coding gene	family with sequence similarity 126, member A
Tssr50298	5	23922660 to 23922694	34	-	TSS region	transcription start site region 50298
Tssr50299	5	23922914 to 23922929	15	-	TSS region	transcription start site region 50299