Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:23434164-23904167

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
5031425E22Rik 5 23382308 to 23434269 51961 - lincRNA gene RIKEN cDNA 5031425E22 gene
Cpgi15580 5 23432671 to 23435386 2715 CpG island CpG island 15580
Tssr50273 5 23434224 to 23434236 12 - TSS region transcription start site region 50273
Tssr50274 5 23434307 to 23434359 52 - TSS region transcription start site region 50274
Tssr45370 5 23434435 to 23434471 36 + TSS region transcription start site region 45370
Kmt2e 5 23434441 to 23504235 69794 + protein coding gene lysine (K)-specific methyltransferase 2E
Tssr45371 5 23434502 to 23434513 11 + TSS region transcription start site region 45371
Tssr45372 5 23434535 to 23434554 19 + TSS region transcription start site region 45372
Tssr1436 5 23434578 to 23434587 9 + TSS region transcription start site region 1436
Tssr50275 5 23435253 to 23435264 11 - TSS region transcription start site region 50275
Tssr45373 5 23435379 to 23435396 17 + TSS region transcription start site region 45373
Tssr45374 5 23446702 to 23446708 6 + TSS region transcription start site region 45374
Tssr45375 5 23465136 to 23465148 12 + TSS region transcription start site region 45375
Tssr45376 5 23465218 to 23465233 15 + TSS region transcription start site region 45376
Tssr45377 5 23479046 to 23479049 3 + TSS region transcription start site region 45377
Tssr45378 5 23482417 to 23482432 15 + TSS region transcription start site region 45378
Tssr45379 5 23482464 to 23482479 15 + TSS region transcription start site region 45379
Tssr45380 5 23485333 to 23485345 12 + TSS region transcription start site region 45380
Tssr45381 5 23485354 to 23485367 13 + TSS region transcription start site region 45381
Gm25219 5 23487394 to 23487723 329 - unclassified non-coding RNA gene predicted gene, 25219
Tssr45382 5 23496079 to 23496095 16 + TSS region transcription start site region 45382
Tssr45383 5 23496108 to 23496137 29 + TSS region transcription start site region 45383
Tssr45384 5 23496399 to 23496417 18 + TSS region transcription start site region 45384
Tssr45385 5 23496422 to 23496435 13 + TSS region transcription start site region 45385
Tssr45386 5 23496498 to 23496519 21 + TSS region transcription start site region 45386
Tssr45387 5 23500447 to 23500462 15 + TSS region transcription start site region 45387
Tssr45388 5 23501559 to 23501574 15 + TSS region transcription start site region 45388
Tssr1437 5 23501591 to 23501608 17 + TSS region transcription start site region 1437
Tssr45389 5 23501953 to 23501968 15 + TSS region transcription start site region 45389
Tssr45390 5 23501998 to 23502017 19 + TSS region transcription start site region 45390
Tssr45391 5 23502085 to 23502105 20 + TSS region transcription start site region 45391
Tssr45392 5 23502936 to 23502970 34 + TSS region transcription start site region 45392
Srpk2 5 23503356 to 23684643 181287 - protein coding gene serine/arginine-rich protein specific kinase 2
Tssr50276 5 23506738 to 23506760 22 - TSS region transcription start site region 50276
Tssr50277 5 23507237 to 23507240 3 - TSS region transcription start site region 50277
Tssr50278 5 23518725 to 23518757 32 - TSS region transcription start site region 50278
Tssr50279 5 23518795 to 23518809 14 - TSS region transcription start site region 50279
Tssr50280 5 23586620 to 23586627 7 - TSS region transcription start site region 50280
Tssr1438 5 23586794 to 23586832 38 + TSS region transcription start site region 1438
Tssr45393 5 23598279 to 23598284 5 + TSS region transcription start site region 45393
Tssr50281 5 23616528 to 23616597 69 - TSS region transcription start site region 50281
Tssr50282 5 23669164 to 23669167 3 - TSS region transcription start site region 50282
Gm24009 5 23674289 to 23674381 92 - rRNA gene predicted gene, 24009
Gm43566 5 23674739 to 23675546 807 - sense intronic lncRNA gene predicted gene 43566
Cpgi15581 5 23674813 to 23676519 1706 CpG island CpG island 15581
Tssr50283 5 23675789 to 23675802 13 - TSS region transcription start site region 50283
Tssr50284 5 23675814 to 23675838 24 - TSS region transcription start site region 50284
Tssr50285 5 23675927 to 23675938 11 - TSS region transcription start site region 50285
Tssr50286 5 23675941 to 23675997 56 - TSS region transcription start site region 50286
Tssr45394 5 23676114 to 23676129 15 + TSS region transcription start site region 45394
Tssr50287 5 23676434 to 23676489 55 - TSS region transcription start site region 50287
Tssr50288 5 23684583 to 23684586 3 - TSS region transcription start site region 50288
Tssr50289 5 23684593 to 23684602 9 - TSS region transcription start site region 50289
Tssr50290 5 23684608 to 23684636 28 - TSS region transcription start site region 50290
Tssr50291 5 23684647 to 23684652 5 - TSS region transcription start site region 50291
AI506816 5 23698296 to 23712667 14371 - lncRNA gene expressed sequence AI506816
Gm29779 5 23701126 to 23703111 1985 - protein coding gene predicted gene, 29779
Gm42226 5 23703215 to 23705658 2443 - protein coding gene predicted gene, 42226
Mir3096 5 23710991 to 23711061 70 - miRNA gene microRNA 3096
Cpgi15582 5 23712230 to 23712942 712 CpG island CpG island 15582
Tssr50292 5 23712661 to 23712691 30 - TSS region transcription start site region 50292
Tssr50293 5 23712853 to 23712887 34 - TSS region transcription start site region 50293
Pus7 5 23740648 to 23783711 43063 - protein coding gene pseudouridylate synthase 7
Cpgi15583 5 23782927 to 23783827 900 CpG island CpG island 15583
Tssr50294 5 23783612 to 23783697 85 - TSS region transcription start site region 50294
Tssr50295 5 23783700 to 23783709 9 - TSS region transcription start site region 50295
Cpgi15584 5 23787562 to 23788327 765 CpG island CpG island 15584
Tssr45395 5 23787691 to 23787751 60 + TSS region transcription start site region 45395
Rint1 5 23787711 to 23820369 32658 + protein coding gene RAD50 interactor 1
Tssr45396 5 23787757 to 23787774 17 + TSS region transcription start site region 45396
Gm43054 5 23790702 to 23791585 883 + unclassified gene predicted gene 43054
4933427G23Rik 5 23830133 to 23832436 2303 - pseudogene RIKEN cDNA 4933427G23 gene
Cpgi15585 5 23831073 to 23831794 721 CpG island CpG island 15585
Gm22054 5 23836167 to 23836321 154 - snRNA gene predicted gene, 22054
Tomm7 5 23838944 to 23844145 5201 - protein coding gene translocase of outer mitochondrial membrane 7
Cpgi15586 5 23844016 to 23844448 432 CpG island CpG island 15586
Tssr50296 5 23844085 to 23844151 66 - TSS region transcription start site region 50296
Gm42228 5 23849454 to 23852770 3316 - lncRNA gene predicted gene, 42228
Cpgi15587 5 23850374 to 23851024 650 CpG island CpG island 15587
Tssr45397 5 23850575 to 23850589 14 + TSS region transcription start site region 45397
Tssr45398 5 23850590 to 23850607 17 + TSS region transcription start site region 45398
2700038G22Rik 5 23850597 to 23855033 4436 + lincRNA gene RIKEN cDNA 2700038G22 gene
Snord93 5 23852233 to 23852277 44 + snoRNA gene small nucleolar RNA, C/D box 93
Gm9534 5 23863248 to 23892647 29399 - pseudogene predicted gene 9534
Tssr50297 5 23871360 to 23871365 5 - TSS region transcription start site region 50297
D5Jcs55 5 23894739 to 23894881 142 DNA segment DNA segment, Chr 5, John C. Schimenti 55