Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:22809583-24559586

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268 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lhfpl3 5 22746059 to 23275597 529538 + protein coding gene lipoma HMGIC fusion partner-like 3
Cpgi15577 5 22851612 to 22851796 184 CpG island CpG island 15577
Gm43169 5 22863812 to 22868545 4733 - unclassified gene predicted gene 43169
Tssr45353 5 22908333 to 22908359 26 + TSS region transcription start site region 45353
Gm6564 5 22931395 to 22932013 618 - pseudogene predicted pseudogene 6564
Tssr50258 5 22932066 to 22932076 10 - TSS region transcription start site region 50258
Tssr45354 5 22991075 to 22991076 1 + TSS region transcription start site region 45354
Gm11159 5 23052503 to 23058129 5626 unclassified gene predicted gene 11159
Tssr45355 5 23102377 to 23102387 10 + TSS region transcription start site region 45355
Tssr45356 5 23102389 to 23102413 24 + TSS region transcription start site region 45356
Gm3668 5 23143397 to 23145926 2529 + pseudogene predicted gene 3668
Gm42948 5 23200920 to 23223796 22876 - antisense lncRNA gene predicted gene 42948
Gm28022 5 23279866 to 23279911 45 - miRNA gene predicted gene, 28022
Tssr45357 5 23314322 to 23314333 11 + TSS region transcription start site region 45357
Tssr45358 5 23314346 to 23314356 10 + TSS region transcription start site region 45358
Gm42951 5 23330370 to 23347274 16904 - lincRNA gene predicted gene 42951
Gm17434 5 23330644 to 23339650 9006 + protein coding gene predicted gene, 17434
Gm43722 5 23376496 to 23376619 123 + pseudogene predicted gene 43722
5031425E22Rik 5 23382308 to 23434269 51961 - lincRNA gene RIKEN cDNA 5031425E22 gene
Tssr50259 5 23386475 to 23386499 24 - TSS region transcription start site region 50259
Tssr50260 5 23386885 to 23386924 39 - TSS region transcription start site region 50260
Cpgi15578 5 23386933 to 23387213 280 CpG island CpG island 15578
Tssr50261 5 23386984 to 23387016 32 - TSS region transcription start site region 50261
Tssr50262 5 23387033 to 23387061 28 - TSS region transcription start site region 50262
4930580E04Rik 5 23387109 to 23388601 1492 + lincRNA gene RIKEN cDNA 4930580E04 gene
Tssr45359 5 23387261 to 23387269 8 + TSS region transcription start site region 45359
Tssr45360 5 23387273 to 23387297 24 + TSS region transcription start site region 45360
Tssr45361 5 23387300 to 23387317 17 + TSS region transcription start site region 45361
Gm43058 5 23387620 to 23388244 624 - pseudogene predicted gene 43058
D5Jcs54 5 23389533 to 23389682 149 DNA segment DNA segment, Chr 5, John C. Schimenti 54
Gm42509 5 23396103 to 23396883 780 + unclassified gene predicted gene 42509
Gm46902 5 23399283 to 23402333 3050 - lncRNA gene predicted gene, 46902
Tssr50263 5 23402576 to 23402578 2 - TSS region transcription start site region 50263
Tssr50264 5 23403286 to 23403308 22 - TSS region transcription start site region 50264
2900022P04Rik 5 23404276 to 23405072 796 unclassified gene RIKEN cDNA 2900022P04 gene
Cpgi15579 5 23418250 to 23418720 470 CpG island CpG island 15579
Tssr50265 5 23418514 to 23418557 43 - TSS region transcription start site region 50265
Tssr45362 5 23418609 to 23418650 41 + TSS region transcription start site region 45362
Cpgi15580 5 23432671 to 23435386 2715 CpG island CpG island 15580
Tssr50266 5 23432709 to 23432727 18 - TSS region transcription start site region 50266
Tssr50267 5 23432750 to 23432779 29 - TSS region transcription start site region 50267
Tssr45363 5 23432823 to 23432828 5 + TSS region transcription start site region 45363
Tssr45364 5 23433083 to 23433131 48 + TSS region transcription start site region 45364
Tssr45365 5 23433152 to 23433163 11 + TSS region transcription start site region 45365
Tssr50268 5 23433277 to 23433293 16 - TSS region transcription start site region 50268
Tssr50269 5 23433305 to 23433344 39 - TSS region transcription start site region 50269
Tssr45366 5 23433441 to 23433531 90 + TSS region transcription start site region 45366
Tssr50270 5 23433866 to 23433880 14 - TSS region transcription start site region 50270
Tssr50271 5 23433913 to 23433931 18 - TSS region transcription start site region 50271
Tssr45367 5 23433934 to 23433950 16 + TSS region transcription start site region 45367
Tssr50272 5 23433953 to 23433963 10 - TSS region transcription start site region 50272
Tssr45368 5 23433953 to 23433979 26 + TSS region transcription start site region 45368
Tssr45369 5 23434091 to 23434130 39 + TSS region transcription start site region 45369
Tssr50273 5 23434224 to 23434236 12 - TSS region transcription start site region 50273
Tssr50274 5 23434307 to 23434359 52 - TSS region transcription start site region 50274
Tssr45370 5 23434435 to 23434471 36 + TSS region transcription start site region 45370
Kmt2e 5 23434441 to 23504235 69794 + protein coding gene lysine (K)-specific methyltransferase 2E
Tssr45371 5 23434502 to 23434513 11 + TSS region transcription start site region 45371
Tssr45372 5 23434535 to 23434554 19 + TSS region transcription start site region 45372
Tssr1436 5 23434578 to 23434587 9 + TSS region transcription start site region 1436
Tssr50275 5 23435253 to 23435264 11 - TSS region transcription start site region 50275
Tssr45373 5 23435379 to 23435396 17 + TSS region transcription start site region 45373
Tssr45374 5 23446702 to 23446708 6 + TSS region transcription start site region 45374
Tssr45375 5 23465136 to 23465148 12 + TSS region transcription start site region 45375
Tssr45376 5 23465218 to 23465233 15 + TSS region transcription start site region 45376
Tssr45377 5 23479046 to 23479049 3 + TSS region transcription start site region 45377
Tssr45378 5 23482417 to 23482432 15 + TSS region transcription start site region 45378
Tssr45379 5 23482464 to 23482479 15 + TSS region transcription start site region 45379
Tssr45380 5 23485333 to 23485345 12 + TSS region transcription start site region 45380
Tssr45381 5 23485354 to 23485367 13 + TSS region transcription start site region 45381
Gm25219 5 23487394 to 23487723 329 - unclassified non-coding RNA gene predicted gene, 25219
Tssr45382 5 23496079 to 23496095 16 + TSS region transcription start site region 45382
Tssr45383 5 23496108 to 23496137 29 + TSS region transcription start site region 45383
Tssr45384 5 23496399 to 23496417 18 + TSS region transcription start site region 45384
Tssr45385 5 23496422 to 23496435 13 + TSS region transcription start site region 45385
Tssr45386 5 23496498 to 23496519 21 + TSS region transcription start site region 45386
Tssr45387 5 23500447 to 23500462 15 + TSS region transcription start site region 45387
Tssr45388 5 23501559 to 23501574 15 + TSS region transcription start site region 45388
Tssr1437 5 23501591 to 23501608 17 + TSS region transcription start site region 1437
Tssr45389 5 23501953 to 23501968 15 + TSS region transcription start site region 45389
Tssr45390 5 23501998 to 23502017 19 + TSS region transcription start site region 45390
Tssr45391 5 23502085 to 23502105 20 + TSS region transcription start site region 45391
Tssr45392 5 23502936 to 23502970 34 + TSS region transcription start site region 45392
Srpk2 5 23503356 to 23684643 181287 - protein coding gene serine/arginine-rich protein specific kinase 2
Tssr50276 5 23506738 to 23506760 22 - TSS region transcription start site region 50276
Tssr50277 5 23507237 to 23507240 3 - TSS region transcription start site region 50277
Tssr50278 5 23518725 to 23518757 32 - TSS region transcription start site region 50278
Tssr50279 5 23518795 to 23518809 14 - TSS region transcription start site region 50279
Tssr50280 5 23586620 to 23586627 7 - TSS region transcription start site region 50280
Tssr1438 5 23586794 to 23586832 38 + TSS region transcription start site region 1438
Tssr45393 5 23598279 to 23598284 5 + TSS region transcription start site region 45393
Tssr50281 5 23616528 to 23616597 69 - TSS region transcription start site region 50281
Tssr50282 5 23669164 to 23669167 3 - TSS region transcription start site region 50282
Gm24009 5 23674289 to 23674381 92 - rRNA gene predicted gene, 24009
Gm43566 5 23674739 to 23675546 807 - sense intronic lncRNA gene predicted gene 43566
Cpgi15581 5 23674813 to 23676519 1706 CpG island CpG island 15581
Tssr50283 5 23675789 to 23675802 13 - TSS region transcription start site region 50283
Tssr50284 5 23675814 to 23675838 24 - TSS region transcription start site region 50284
Tssr50285 5 23675927 to 23675938 11 - TSS region transcription start site region 50285
Tssr50286 5 23675941 to 23675997 56 - TSS region transcription start site region 50286
Tssr45394 5 23676114 to 23676129 15 + TSS region transcription start site region 45394
Tssr50287 5 23676434 to 23676489 55 - TSS region transcription start site region 50287
Tssr50288 5 23684583 to 23684586 3 - TSS region transcription start site region 50288
Tssr50289 5 23684593 to 23684602 9 - TSS region transcription start site region 50289
Tssr50290 5 23684608 to 23684636 28 - TSS region transcription start site region 50290
Tssr50291 5 23684647 to 23684652 5 - TSS region transcription start site region 50291
AI506816 5 23698296 to 23712667 14371 - lncRNA gene expressed sequence AI506816
Gm29779 5 23701126 to 23703111 1985 - protein coding gene predicted gene, 29779
Gm42226 5 23703215 to 23705658 2443 - protein coding gene predicted gene, 42226
Mir3096 5 23710991 to 23711061 70 - miRNA gene microRNA 3096
Cpgi15582 5 23712230 to 23712942 712 CpG island CpG island 15582
Tssr50292 5 23712661 to 23712691 30 - TSS region transcription start site region 50292
Tssr50293 5 23712853 to 23712887 34 - TSS region transcription start site region 50293
Pus7 5 23740648 to 23783711 43063 - protein coding gene pseudouridylate synthase 7
Cpgi15583 5 23782927 to 23783827 900 CpG island CpG island 15583
Tssr50294 5 23783612 to 23783697 85 - TSS region transcription start site region 50294
Tssr50295 5 23783700 to 23783709 9 - TSS region transcription start site region 50295
Cpgi15584 5 23787562 to 23788327 765 CpG island CpG island 15584
Tssr45395 5 23787691 to 23787751 60 + TSS region transcription start site region 45395
Rint1 5 23787711 to 23820369 32658 + protein coding gene RAD50 interactor 1
Tssr45396 5 23787757 to 23787774 17 + TSS region transcription start site region 45396
Gm43054 5 23790702 to 23791585 883 + unclassified gene predicted gene 43054
4933427G23Rik 5 23830133 to 23832436 2303 - pseudogene RIKEN cDNA 4933427G23 gene
Cpgi15585 5 23831073 to 23831794 721 CpG island CpG island 15585
Gm22054 5 23836167 to 23836321 154 - snRNA gene predicted gene, 22054
Tomm7 5 23838944 to 23844145 5201 - protein coding gene translocase of outer mitochondrial membrane 7
Cpgi15586 5 23844016 to 23844448 432 CpG island CpG island 15586
Tssr50296 5 23844085 to 23844151 66 - TSS region transcription start site region 50296
Gm42228 5 23849454 to 23852770 3316 - lncRNA gene predicted gene, 42228
Cpgi15587 5 23850374 to 23851024 650 CpG island CpG island 15587
Tssr45397 5 23850575 to 23850589 14 + TSS region transcription start site region 45397
Tssr45398 5 23850590 to 23850607 17 + TSS region transcription start site region 45398
2700038G22Rik 5 23850597 to 23855033 4436 + lincRNA gene RIKEN cDNA 2700038G22 gene
Snord93 5 23852233 to 23852277 44 + snoRNA gene small nucleolar RNA, C/D box 93
Gm9534 5 23863248 to 23892647 29399 - pseudogene predicted gene 9534
Tssr50297 5 23871360 to 23871365 5 - TSS region transcription start site region 50297
D5Jcs55 5 23894739 to 23894881 142 DNA segment DNA segment, Chr 5, John C. Schimenti 55
Fam126a 5 23915276 to 24030690 115414 - protein coding gene family with sequence similarity 126, member A
Tssr50298 5 23922660 to 23922694 34 - TSS region transcription start site region 50298
Tssr50299 5 23922914 to 23922929 15 - TSS region transcription start site region 50299
Gm6745 5 24009887 to 24010412 525 - pseudogene predicted gene 6745
Cpgi15588 5 24029681 to 24030939 1258 CpG island CpG island 15588
Tssr50300 5 24030297 to 24030319 22 - TSS region transcription start site region 50300
Tssr50301 5 24030626 to 24030646 20 - TSS region transcription start site region 50301
Tssr50302 5 24030649 to 24030707 58 - TSS region transcription start site region 50302
D5Mit381 5 24031043 to 24031192 149 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology-381
Gm18038 5 24085244 to 24085728 484 + pseudogene predicted gene, 18038
Cpgi15589 5 24100365 to 24101322 957 CpG island CpG island 15589
Tssr50303 5 24100467 to 24100485 18 - TSS region transcription start site region 50303
Tssr45399 5 24100578 to 24100669 91 + TSS region transcription start site region 45399
Klhl7 5 24100605 to 24160792 60187 + protein coding gene kelch-like 7
Tssr45400 5 24100695 to 24100698 3 + TSS region transcription start site region 45400
Tssr45401 5 24105010 to 24105015 5 + TSS region transcription start site region 45401
Gm3724 5 24118316 to 24118664 348 - pseudogene predicted gene 3724
Tssr45402 5 24124828 to 24124834 6 + TSS region transcription start site region 45402
Tssr45403 5 24128146 to 24128151 5 + TSS region transcription start site region 45403
Gm43389 5 24153294 to 24155888 2594 + unclassified gene predicted gene 43389
Tssr45404 5 24159845 to 24159848 3 + TSS region transcription start site region 45404
Cpgi15590 5 24164803 to 24165375 572 CpG island CpG island 15590
Nupl2 5 24164963 to 24184013 19050 + protein coding gene nucleoporin like 2
Tssr45405 5 24164985 to 24165044 59 + TSS region transcription start site region 45405
Tssr45406 5 24165048 to 24165055 7 + TSS region transcription start site region 45406
Gm5575 5 24209327 to 24209724 397 - pseudogene predicted gene 5575
Gm43828 5 24232409 to 24233047 638 + pseudogene predicted gene 43828
D5Mit179.1 5 24233430 to 24233539 109 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 179.1
D5Mit179 5 24233575 to 24233700 125 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 179
Gm43827 5 24240512 to 24241901 1389 + pseudogene predicted gene 43827
Tssr45407 5 24256707 to 24256728 21 + TSS region transcription start site region 45407
Gm9836 5 24256822 to 24257037 215 + pseudogene predicted pseudogene 9836
Tssr50304 5 24266715 to 24266752 37 - TSS region transcription start site region 50304
Gm33476 5 24301261 to 24306476 5215 + lncRNA gene predicted gene, 33476
Kcnh2 5 24319589 to 24351604 32015 - protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 2
Cpgi15591 5 24324975 to 24325965 990 CpG island CpG island 15591
Tssr50305 5 24329271 to 24329283 12 - TSS region transcription start site region 50305
Tssr50306 5 24329556 to 24329598 42 - TSS region transcription start site region 50306
Cpgi15592 5 24329562 to 24329717 155 CpG island CpG island 15592
Gm15589 5 24333923 to 24337216 3293 + antisense lncRNA gene predicted gene 15589
Tssr50307 5 24344529 to 24344544 15 - TSS region transcription start site region 50307
Tssr50308 5 24344550 to 24344567 17 - TSS region transcription start site region 50308
Tssr50309 5 24344572 to 24344586 14 - TSS region transcription start site region 50309
Cpgi15593 5 24347800 to 24349068 1268 CpG island CpG island 15593
Cpgi15594 5 24350863 to 24352483 1620 CpG island CpG island 15594
Tssr50310 5 24351072 to 24351116 44 - TSS region transcription start site region 50310
Tssr50311 5 24351628 to 24351647 19 - TSS region transcription start site region 50311
Tssr50312 5 24351657 to 24351702 45 - TSS region transcription start site region 50312
Tssr45408 5 24364804 to 24364824 20 + TSS region transcription start site region 45408
Nos3 5 24364819 to 24384474 19655 + protein coding gene nitric oxide synthase 3, endothelial cell
Gm15587 5 24366192 to 24383614 17422 - antisense lncRNA gene predicted gene 15587
D5Jcs56 5 24371083 to 24371236 153 DNA segment DNA segment, Chr 5, John C. Schimenti 56
Tssr50313 5 24373937 to 24373963 26 - TSS region transcription start site region 50313
Cpgi15595 5 24383291 to 24383978 687 CpG island CpG island 15595
Tssr45409 5 24383496 to 24383521 25 + TSS region transcription start site region 45409
Tssr45410 5 24383547 to 24383561 14 + TSS region transcription start site region 45410
Tssr50314 5 24383608 to 24383621 13 - TSS region transcription start site region 50314
Atg9b 5 24384181 to 24392143 7962 - protein coding gene autophagy related 9B
Cpgi15596 5 24387314 to 24388691 1377 CpG island CpG island 15596
Tssr50315 5 24391945 to 24391961 16 - TSS region transcription start site region 50315
Tssr50316 5 24391964 to 24392007 43 - TSS region transcription start site region 50316
Tssr50317 5 24392012 to 24392031 19 - TSS region transcription start site region 50317
Tssr50318 5 24392490 to 24392494 4 - TSS region transcription start site region 50318